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Aliases for NUP188 Gene

Aliases for NUP188 Gene

  • Nucleoporin 188 2 3 5
  • KIAA0169 2 3 4
  • Nucleoporin 188kDa 2 3
  • HNup188 3 4
  • Nucleoporin NUP188 Homolog 3

External Ids for NUP188 Gene

Previous HGNC Symbols for NUP188 Gene

  • KIAA0169

Previous GeneCards Identifiers for NUP188 Gene

  • GC09U900613
  • GC09P128789
  • GC09P130749
  • GC09P131709
  • GC09P101317

Summaries for NUP188 Gene

Entrez Gene Summary for NUP188 Gene

  • The nuclear pore complex (NPC) is found on the nuclear envelope and forms a gateway that regulates the flow of proteins and RNAs between the cytoplasm and nucleoplasm. The NPC is comprised of approximately 30 distinct proteins collectively known as nucleoporins. Nucleoporins are pore-complex-specific glycoproteins which often have cytoplasmically oriented O-linked N-acetylglucosamine residues and numerous repeats of the pentapeptide sequence XFXFG. However, the nucleoporin protein encoded by this gene does not contain the typical FG repeat sequences found in most vertebrate nucleoporins. This nucleoporin is thought to form part of the scaffold for the central channel of the nuclear pore. [provided by RefSeq, Jan 2013]

GeneCards Summary for NUP188 Gene

NUP188 (Nucleoporin 188) is a Protein Coding gene. Among its related pathways are Interferon gamma signaling and Transport of the SLBP independent Mature mRNA. GO annotations related to this gene include binding. An important paralog of this gene is ENSG00000251184.

UniProtKB/Swiss-Prot for NUP188 Gene

  • May function as a component of the nuclear pore complex (NPC).

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUP188 Gene

Genomics for NUP188 Gene

Regulatory Elements for NUP188 Gene

Enhancers for NUP188 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH09F128987 1.2 Ensembl ENCODE 12.3 +40.3 40283 1.4 ZNF362 RNF2 JUN ZMYM3 FOSL1 JUND ADNP PRDM10 FOS SH3GLB2 NUP188 DOLK KYAT1 LRRC8A PHYHD1 GC09M128998
GH09F128889 0.6 Ensembl ENCODE 12 -55.8 -55763 4.3 MLX ARID4B SIN3A DMAP1 YY1 GLIS2 FOS DEK ZNF263 MXD4 PKN3 SPOUT1 PHYHD1 NUP188 DOLK LOC100506100 ZDHHC12 LOC101929270 SPTAN1 KYAT1
GH09F128877 0.9 Ensembl ENCODE 12 -64.4 -64410 12.3 PKNOX1 CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 SPOUT1 ENSG00000230848 UBE2V1P4 LOC101929314 ENSG00000272696 USP20 PHYHD1 NUP188 DOLK PKN3
GH09F128909 1 FANTOM5 Ensembl ENCODE 11.4 -35.5 -35458 5.5 PKNOX1 ARID4B YY1 GLIS2 FOS SP5 TBX21 ZNF592 SREBF1 MAFF LRRC8A KYAT1 PHYHD1 DOLK NUP188 SPOUT1 LOC100506100 ZDHHC12 PKN3 GLE1
GH09F128915 0.7 ENCODE 11.4 -30.6 -30649 2.8 HDGF PKNOX1 MLX FEZF1 DMAP1 ZNF2 ZNF48 YY1 SLC30A9 GLIS2 LRRC8A KYAT1 DOLK NUP188 SPOUT1 LOC100506100 ZDHHC12 PKN3 LOC101929291 PHYHD1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NUP188 on UCSC Golden Path with GeneCards custom track

Promoters for NUP188 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001315298 307 2001 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for NUP188 Gene

Chromosome:
9
Start:
128,947,693 bp from pter
End:
129,007,096 bp from pter
Size:
59,404 bases
Orientation:
Plus strand

Genomic View for NUP188 Gene

Genes around NUP188 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUP188 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUP188 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUP188 Gene

Proteins for NUP188 Gene

  • Protein details for NUP188 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5SRE5-NU188_HUMAN
    Recommended name:
    Nucleoporin NUP188 homolog
    Protein Accession:
    Q5SRE5
    Secondary Accessions:
    • Q14675
    • Q2TA87
    • Q7Z3K8
    • Q8IWF1

    Protein attributes for NUP188 Gene

    Size:
    1749 amino acids
    Molecular mass:
    196043 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD97835.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NUP188 Gene

    Alternative splice isoforms for NUP188 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUP188 Gene

Post-translational modifications for NUP188 Gene

  • Ubiquitination at Lys 38, Lys 344, Lys 470, Lys 479, Lys 481, Lys 500, Lys 720, Lys 812, Lys 1409, Lys 1496, Lys 1684, and Lys 1727
  • Modification sites at PhosphoSitePlus

Other Protein References for NUP188 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NUP188 Gene

Domains & Families for NUP188 Gene

Gene Families for NUP188 Gene

Protein Domains for NUP188 Gene

Suggested Antigen Peptide Sequences for NUP188 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NUP188: view

No data available for UniProtKB/Swiss-Prot for NUP188 Gene

Function for NUP188 Gene

Molecular function for NUP188 Gene

UniProtKB/Swiss-Prot Function:
May function as a component of the nuclear pore complex (NPC).

Gene Ontology (GO) - Molecular Function for NUP188 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0017056 structural constituent of nuclear pore IBA --
genes like me logo Genes that share ontologies with NUP188: view
genes like me logo Genes that share phenotypes with NUP188: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUP188 Gene

Localization for NUP188 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUP188 Gene

Nucleus, nuclear pore complex.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NUP188 Gene COMPARTMENTS Subcellular localization image for NUP188 gene
Compartment Confidence
nucleus 5
cytosol 3
mitochondrion 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for NUP188 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005635 nuclear envelope TAS --
GO:0005643 nuclear pore IEA --
GO:0016020 membrane IDA 19946888
GO:0044611 nuclear pore inner ring IBA --
genes like me logo Genes that share ontologies with NUP188: view

Pathways & Interactions for NUP188 Gene

SuperPathways for NUP188 Gene

SuperPathway Contained pathways
1 Transport of the SLBP independent Mature mRNA
2 HIV Life Cycle
.45
3 Cell Cycle, Mitotic
.60
4 Mitotic Prophase
5 Influenza Viral RNA Transcription and Replication
genes like me logo Genes that share pathways with NUP188: view

Pathways by source for NUP188 Gene

Gene Ontology (GO) - Biological Process for NUP188 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006405 RNA export from nucleus IBA --
GO:0006406 mRNA export from nucleus TAS --
GO:0006409 tRNA export from nucleus TAS --
GO:0006606 protein import into nucleus IBA --
GO:0006810 transport IEA --
genes like me logo Genes that share ontologies with NUP188: view

No data available for SIGNOR curated interactions for NUP188 Gene

Transcripts for NUP188 Gene

Unigene Clusters for NUP188 Gene

Nucleoporin 188kDa:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUP188 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20a · 20b ^ 21 ^ 22 ^ 23 ^ 24a · 24b ^
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:

ExUns: 25 ^ 26a · 26b ^ 27 ^ 28 ^ 29a · 29b ^ 30a · 30b ^ 31 ^ 32a · 32b ^ 33a · 33b ^ 34 ^ 35 ^ 36 ^ 37 ^ 38a · 38b ^ 39 ^ 40 ^ 41 ^ 42 ^ 43 ^ 44
SP1: - - - -
SP2: - - -
SP3:
SP4:
SP5: - -
SP6:
SP7:

Relevant External Links for NUP188 Gene

GeneLoc Exon Structure for
NUP188
ECgene alternative splicing isoforms for
NUP188

Expression for NUP188 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NUP188 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NUP188 Gene

This gene is overexpressed in Synovial fluid (15.2) and Cerebrospinal fluid (6.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NUP188 Gene



Protein tissue co-expression partners for NUP188 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NUP188 Gene:

NUP188

SOURCE GeneReport for Unigene cluster for NUP188 Gene:

Hs.308340
genes like me logo Genes that share expression patterns with NUP188: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NUP188 Gene

Orthologs for NUP188 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUP188 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUP188 34 35
  • 99.49 (n)
cow
(Bos Taurus)
Mammalia -- 35
  • 96 (a)
OneToMany
NUP188 34
  • 90.24 (n)
dog
(Canis familiaris)
Mammalia -- 35
  • 96 (a)
OneToMany
NUP188 34
  • 90.78 (n)
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 92 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 92 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Nup188 34 16 35
  • 87.57 (n)
rat
(Rattus norvegicus)
Mammalia Nup188 34
  • 87.38 (n)
chicken
(Gallus gallus)
Aves NUP188 34 35
  • 76.59 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 74 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia nup188 34
  • 69.72 (n)
Str.4929 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.20942 34
zebrafish
(Danio rerio)
Actinopterygii nup188 34 35
  • 68.2 (n)
wufk95d02 34
fruit fly
(Drosophila melanogaster)
Insecta CG8771 35
  • 19 (a)
OneToMany
Species where no ortholog for NUP188 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUP188 Gene

ENSEMBL:
Gene Tree for NUP188 (if available)
TreeFam:
Gene Tree for NUP188 (if available)

Paralogs for NUP188 Gene

Paralogs for NUP188 Gene

genes like me logo Genes that share paralogs with NUP188: view

Variants for NUP188 Gene

Sequence variations from dbSNP and Humsavar for NUP188 Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs137853109 Pathogenic 128,947,009(-) AGCGG(A/T)GCCAG upstream-variant-2KB, reference, missense
rs137853110 Pathogenic 128,945,982(-) CCCCT(A/C)TGCCG upstream-variant-2KB, reference, missense
rs387907030 Pathogenic 128,946,082(-) TGACA(C/G)ACATC upstream-variant-2KB, reference, missense
rs587777137 Pathogenic 128,947,302(+) GGGTC(A/G)TATCT upstream-variant-2KB, reference, missense
rs727503904 Pathogenic 128,945,857(-) TTGCG(A/C)AGATC upstream-variant-2KB, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for NUP188 Gene

Variant ID Type Subtype PubMed ID
esv2739079 CNV deletion 23290073
nsv1115234 CNV deletion 24896259
nsv509323 CNV insertion 20534489
nsv831729 CNV loss 17160897

Variation tolerance for NUP188 Gene

Residual Variation Intolerance Score: 4.87% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.41; 63.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUP188 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUP188

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUP188 Gene

Disorders for NUP188 Gene

UniProtKB/Swiss-Prot

NU188_HUMAN
  • Note=Copy number variations of NUP188 gene may be a cause of heterotaxy, a congenital heart disease resulting from abnormalities in left-right (LR) body patterning. {ECO:0000269 PubMed:21282601}.

Relevant External Links for NUP188

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUP188

No disorders were found for NUP188 Gene.

No data available for MalaCards and Genatlas for NUP188 Gene

Publications for NUP188 Gene

  1. Identification of a new vertebrate nucleoporin, Nup188, with the use of a novel organelle trap assay. (PMID: 11029043) Miller B.R. … Forbes D.J. (Mol. Biol. Cell 2000) 2 3 4 64
  2. Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 8724849) Nagase T. … Nomura N. (DNA Res. 1996) 3 4 64
  3. Mutations in nuclear pore genes NUP93, NUP205 and XPO5 cause steroid-resistant nephrotic syndrome. (PMID: 26878725) Braun D.A. … Hildebrandt F. (Nat. Genet. 2016) 3 64
  4. Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression. (PMID: 25693804) Diner B.A. … Cristea I.M. (Mol. Cell Proteomics 2015) 3 64
  5. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3 64

Products for NUP188 Gene

Sources for NUP188 Gene

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