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Aliases for NUP160 Gene

Aliases for NUP160 Gene

  • Nucleoporin 160kDa 2 3
  • KIAA0197 4 6
  • 160 KDa Nucleoporin 4
  • Nucleoporin Nup160 4
  • Nucleoporin 160kD 2
  • NUP120 4

External Ids for NUP160 Gene

Summaries for NUP160 Gene

Entrez Gene Summary for NUP160 Gene

  • NUP160 is 1 of up to 60 proteins that make up the 120-MD nuclear pore complex, which mediates nucleoplasmic transport.[supplied by OMIM, Apr 2004]

GeneCards Summary for NUP160 Gene

NUP160 (Nucleoporin 160kDa) is a Protein Coding gene. Among its related pathways are Disease and Cell Cycle, Mitotic. GO annotations related to this gene include nucleocytoplasmic transporter activity.

UniProtKB/Swiss-Prot for NUP160 Gene

  • Involved in poly(A)+ RNA transport.

Gene Wiki entry for NUP160 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUP160 Gene

Genomics for NUP160 Gene

Genomic Location for NUP160 Gene

Start:
47,778,087 bp from pter
End:
47,848,555 bp from pter
Size:
70,469 bases
Orientation:
Minus strand

Genomic View for NUP160 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUP160 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUP160 Gene

Regulatory Elements for NUP160 Gene

Proteins for NUP160 Gene

  • Protein details for NUP160 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q12769-NU160_HUMAN
    Recommended name:
    Nuclear pore complex protein Nup160
    Protein Accession:
    Q12769
    Secondary Accessions:
    • B4DYE8
    • B4E2J9
    • Q08AD3
    • Q7Z5X6
    • Q96GB3
    • Q9H660

    Protein attributes for NUP160 Gene

    Size:
    1436 amino acids
    Molecular mass:
    162121 Da
    Quaternary structure:
    • Forms part of the Nup160 subcomplex in the nuclear pore which is composed of NUP160, NUP133, NUP107 and Nup96. This complex plays a role in RNA export and in tethering Nup98 and NUP153 to the nucleus.
    SequenceCaution:
    • Sequence=AAH09822.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAA12110.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact. Aberrant splice sites.; Evidence={ECO:0000305}; Sequence=BAB15406.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAG65161.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for NUP160 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUP160 Gene

Proteomics data for NUP160 Gene at MOPED

Post-translational modifications for NUP160 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys131, Lys343, Lys925, Lys939, Lys965, Lys1006, Lys1120, Lys1185, and Lys1415

Other Protein References for NUP160 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for NUP160 Gene

Domains for NUP160 Gene

Protein Domains for NUP160 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with NUP160: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NUP160 Gene

Function for NUP160 Gene

Molecular function for NUP160 Gene

UniProtKB/Swiss-Prot Function: Involved in poly(A)+ RNA transport.

Gene Ontology (GO) - Molecular Function for NUP160 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005487 nucleocytoplasmic transporter activity IDA 11684705
GO:0005515 protein binding IPI 15146057
genes like me logo Genes that share ontologies with NUP160: view
genes like me logo Genes that share phenotypes with NUP160: view

miRNA for NUP160 Gene

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for NUP160 Gene

Localization for NUP160 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUP160 Gene

Nucleus, nuclear pore complex.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NUP160 Gene COMPARTMENTS Subcellular localization image for NUP160 gene
Compartment Confidence
nucleus 5
cytosol 4
extracellular 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NUP160 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000776 colocalizes_with kinetochore IDA 15146057
GO:0005635 nuclear envelope TAS --
GO:0005643 nuclear pore IDA 11564755
GO:0005829 cytosol TAS --
GO:0031080 nuclear pore outer ring NAS 15146057
genes like me logo Genes that share ontologies with NUP160: view

Pathways for NUP160 Gene

SuperPathways for NUP160 Gene

genes like me logo Genes that share pathways with NUP160: view

Pathways by source for NUP160 Gene

47 Reactome pathways for NUP160 Gene
1 KEGG pathway for NUP160 Gene

Gene Ontology (GO) - Biological Process for NUP160 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000278 mitotic cell cycle TAS --
GO:0005975 carbohydrate metabolic process TAS --
GO:0006406 mRNA export from nucleus IDA 11684705
GO:0007077 mitotic nuclear envelope disassembly TAS --
GO:0007264 small GTPase mediated signal transduction TAS --
genes like me logo Genes that share ontologies with NUP160: view

Transcripts for NUP160 Gene

Unigene Clusters for NUP160 Gene

Nucleoporin 160kDa:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUP160 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^
SP1: - - -
SP2: - - - -
SP3:
SP4:
SP5:
SP6: -
SP7:
SP8:

ExUns: 22 ^ 23 ^ 24 ^ 25 ^ 26 ^ 27 ^ 28a · 28b ^ 29a · 29b · 29c ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35a · 35b ^ 36 ^ 37 ^ 38a · 38b
SP1: - - - -
SP2: - - - -
SP3: -
SP4:
SP5:
SP6:
SP7:
SP8:

Relevant External Links for NUP160 Gene

GeneLoc Exon Structure for
NUP160
ECgene alternative splicing isoforms for
NUP160

Expression for NUP160 Gene

mRNA expression in normal human tissues for NUP160 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NUP160 Gene

SOURCE GeneReport for Unigene cluster for NUP160 Gene Hs.744107

genes like me logo Genes that share expressions with NUP160: view

Orthologs for NUP160 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUP160 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUP160 36
  • 99.58 (n)
  • 99.37 (a)
NUP160 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NUP160 36
  • 90.35 (n)
  • 93.94 (a)
NUP160 37
  • 92 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NUP160 36
  • 90.52 (n)
  • 92.39 (a)
NUP160 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nup160 36
  • 88.23 (n)
  • 92.72 (a)
Nup160 16
Nup160 37
  • 93 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NUP160 37
  • 87 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NUP160 37
  • 77 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nup160 36
  • 89 (n)
  • 93.55 (a)
chicken
(Gallus gallus)
Aves NUP160 36
  • 69.71 (n)
  • 74.95 (a)
NUP160 37
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NUP160 37
  • 70 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii CABZ01080568.2 37
  • 64 (a)
OneToOne
nup160 36
  • 63.48 (n)
  • 63.65 (a)
zgc66306 36
fruit fly
(Drosophila melanogaster)
Insecta Nup160 36
  • 43.63 (n)
  • 31.18 (a)
Nup160 37
  • 28 (a)
OneToOne
CG4738 38
  • 30 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 24 (a)
OneToMany
CSA.8115 37
  • 32 (a)
OneToMany
Species with no ortholog for NUP160:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUP160 Gene

ENSEMBL:
Gene Tree for NUP160 (if available)
TreeFam:
Gene Tree for NUP160 (if available)

Paralogs for NUP160 Gene

No data available for Paralogs for NUP160 Gene

Variants for NUP160 Gene

Sequence variations from dbSNP and Humsavar for NUP160 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type MAF
rs9909 -- 47,778,223(-) AATCT(C/G)TATAC utr-variant-3-prime
rs754434 -- 47,792,728(+) AAACA(A/G)GTAGA intron-variant
rs930940 -- 47,799,601(-) GCCAC(C/T)GCACT intron-variant
rs1227976 -- 47,850,423(+) gagga(C/T)acagt upstream-variant-2KB
rs1234512 -- 47,850,496(+) aGGAG(A/G)AAGGg upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NUP160 Gene

Variant ID Type Subtype PubMed ID
nsv469858 CNV Gain 16826518
nsv832143 CNV Loss 17160897
nsv825874 CNV Loss 20364138
esv2669124 CNV Deletion 23128226

Relevant External Links for NUP160 Gene

HapMap Linkage Disequilibrium report
NUP160

Disorders for NUP160 Gene

Relevant External Links for NUP160

Genetic Association Database (GAD)
NUP160
Human Genome Epidemiology (HuGE) Navigator
NUP160
genes like me logo Genes that share disorders with NUP160: view

No data available for UniProtKB/Swiss-Prot for NUP160 Gene

Publications for NUP160 Gene

  1. Novel vertebrate nucleoporins Nup133 and Nup160 play a role in mRNA export. (PMID: 11684705) Vasu S. … Forbes D.J. (J. Cell Biol. 2001) 2 3 4 23
  2. Prediction of the coding sequences of unidentified human genes. V. The coding sequences of 40 new genes (KIAA0161-KIAA0200) deduced by analysis of cDNA clones from human cell line KG-1. (PMID: 8724849) Nagase T. … Nomura N. (DNA Res. 1996) 3 4
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. An evolutionarily conserved NPC subcomplex, which redistributes in part to kinetochores in mammalian cells. (PMID: 11564755) Belgareh N. … Doye V. (J. Cell Biol. 2001) 3 4

Products for NUP160 Gene

Sources for NUP160 Gene

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