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NUGGC Gene

protein-coding   GIFtS: 31
GCID: GC08M027879

Nuclear GTPase, Germinal Center Associated

(Previous name: chromosome 8 open reading frame 80)
(Previous symbol: C8orf80)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Nuclear GTPase, Germinal Center Associated1 2     SLIP-GC2
C8orf801 2 3     GTPase SLIP-GC2
Speckled-Like Pattern In The Germinal Center1 2 3     Nuclear GTPase SLIP-GC2
Chromosome 8 Open Reading Frame 801     EC 3.6.1.-3

External Ids:    HGNC: 335501   Entrez Gene: 3896432   Ensembl: ENSG000001892337   UniProtKB: Q68CJ63   

Export aliases for NUGGC gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NUGGC Gene:
NUGGC (nuclear GTPase, germinal center associated) is a protein-coding gene. GO annotations related to this gene include GTP binding and GTPase activity.

UniProtKB/Swiss-Prot: SLIP_HUMAN, Q68CJ6
Function: Plays a role as replication-related GTPase protein in germinal center B-cell




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000008.10  NT_167187.2  NC_018919.2  
Regulatory elements:
   Search for regulatory transcription factor binding sites for NUGGC
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for NUGGC

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NUGGC


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 8p21.1   Ensembl cytogenetic band:  8p21.1   HGNC cytogenetic band: 8p21.1

NUGGC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NUGGC gene location

GeneLoc information about chromosome 8         GeneLoc Exon Structure

GeneLoc location for GC08M027879:  view genomic region     (about GC identifiers)

Start:
27,879,481 bp from pter      End:
27,941,388 bp from pter
Size:
61,908 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: SLIP_HUMAN, Q68CJ6 (See protein sequence)
Recommended Name: Nuclear GTPase SLIP-GC  
Size: 796 amino acids; 91132 Da
Sequence caution: Sequence=BAC85251.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Sequence=BAD38652.1; Type=Miscellaneous discrepancy; Note=Probable cloning artifact;
Secondary accessions: Q6ZP73

Explore the universe of human proteins at neXtProt for NUGGC: NX_Q68CJ6

Explore proteomics data for NUGGC at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See NUGGC Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_001010906.1  
    ENSEMBL proteins: 
     ENSP00000408697   ENSP00000388515   ENSP00000345031  

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR001401 Dynamin_GTPase
     IPR027417 P-loop_NTPase

    Graphical View of Domain Structure for InterPro Entry Q68CJ6

    ProtoNet protein and cluster: Q68CJ6


    Find genes that share domains with NUGGC           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: SLIP_HUMAN, Q68CJ6
    Function: Plays a role as replication-related GTPase protein in germinal center B-cell

         Enzyme Number (IUBMB): EC 3.6.1.-1

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003924GTPase activity IEA--
    GO:0005525GTP binding IEA--
         
    Find genes that share ontologies with NUGGC           About GenesLikeMe


    Phenotypes:
         3 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Nuggc):
     hematopoietic system  immune system  no phenotypic analysis 

    Find genes that share phenotypes with NUGGC           About GenesLikeMe

    Animal Models:
         MGI mouse knock-out Nuggctm1.1Diaz for NUGGC

       genOway: Develop your customized and physiologically relevant rodent model for NUGGC

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    SLIP_HUMAN, Q68CJ6: Nucleus

    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--

    Find genes that share ontologies with NUGGC           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NUGGC
    Interactions:

        Search GeneGlobe Interaction Network for NUGGC

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006974cellular response to DNA damage stimulus IEA--
    GO:0016446somatic hypermutation of immunoglobulin genes IEA--

    Find genes that share ontologies with NUGGC           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for NUGGC (SLIP)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for NUGGC gene: 
    NM_001010906.1  

    Unigene Cluster for NUGGC:

    Nuclear GTPase, germinal center associated
    Hs.370129  [show with all ESTs]
    Unigene Representative Sequence: NM_001010906
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000413272(uc003xgm.4) ENST00000418860 ENST00000341513
    miRNA
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    Additional mRNA sequence: 

    AB075870.1 AK129923.1 

    6 DOTS entries:

    DT.440732  DT.101980002  DT.121492288  DT.40283317  DT.97769475  DT.95358652 

    22 AceView cDNA sequences:

    AA243356 BX280763 AA482187 AI479236 AA482282 AA255972 AI928030 AB075870 
    BE514093 CF137482 AA768146 CF138718 AI935423 AW504479 AA284374 AK129923 
    CF136851 AW968887 AA256145 AW408829 BU429067 AA927797 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    NUGGC expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    NUGGC Expression
    About this image

    NUGGC Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    NUGGC Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.370129

    UniProtKB/Swiss-Prot: SLIP_HUMAN, Q68CJ6
    Tissue specificity: Expressed in germinal center B-cell and in lymphomas derived from germinal center B-cell

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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NUGGC

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for NUGGC gene from Selected species (see all 10)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nuggc1 , 5 predicted gene 6005
    nuclear GTPase, germinal center associated1
    81.69(n)1
    79.18(a)1
      14 (34.34 cM)5
    1005035451  NM_001195674.21  NP_001182603.21 
     655985465 
    chicken
    (Gallus gallus)
    Aves C3H8ORF801 chromosome 3 open reading frame, human C8orf80 58.78(n)
    49.1(a)
      422000  XM_420008.4  XP_420008.4 
    lizard
    (Anolis carolinensis)
    Reptilia NUGGC6
    nuclear GTPase, germinal center associated
    37(a)
    1 ↔ 1
    GL343919.1(67425-81016)
    zebrafish
    (Danio rerio)
    Actinopterygii si:dkeyp-85e10.11 si:dkeyp-85e10.1 43.13(n)
    28.66(a)
      497432  XM_005159478.1  XP_005159535.1 


    ENSEMBL Gene Tree for NUGGC (if available)
    TreeFam Gene Tree for NUGGC (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for NUGGC (see all 1562)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 8 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs21003651,2
    C,F,A,H--27878996(-) tgtatA/Gtgaaa 1 -- int121Minor allele frequency- G:0.29NS EA NA WA 2754
    rs1825232481,2
    --27879088(+) AAAGAC/GATTTG 1 -- int10--------
    rs1434420551,2
    --27879093(+) GATTTA/GCAAAA 1 -- int10--------
    rs1121029731,2
    C--27879180(+) CACGTA/TATGGG 1 -- int10--------
    rs1876494161,2
    --27879259(+) AGTCAA/TTATCA 1 -- int10--------
    rs1919595591,2
    --27879346(+) AAGTGC/GTGGCC 1 -- int10--------
    rs170584341,2
    C,F,H--27879381(+) TGAAGC/ACGGGT 1 -- int111Minor allele frequency- A:0.05NA NS EA WA 686
    rs1832182491,2
    C--27879383(+) AAGCCA/GGGTCT 1 -- int10--------
    rs170584361,2
    C,F--27879421(+) TGTTTC/TCAGGA 1 -- int14Minor allele frequency- T:0.02NA WA 260
    rs1420425171,2
    C--27879429(+) GGATAC/TGATGT 1 -- int10--------

    HapMap Linkage Disequilibrium report for NUGGC (27879481 - 27941388 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for NUGGC: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing NUGGC
    DNA2.0 Custom Variant and Variant Library Synthesis for NUGGC

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for NUGGC gene, integrated from 10 sources (see all 11):
    (articles sorted by number of sources associating them with NUGGC)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Speckled-like pattern in the germinal center (SLIP-GC): a nuclear GTPase expressed in activation-induced deaminase-expressing lymphomas and germinal center B cells. (PubMed id 19734146)1, 2, 3 Richter K....Diaz M. (J. Biol. Chem. 2009)
    2. Expression profiling and differential screening between hepatoblastomas and the corresponding normal livers: identification of high expression of the PLK1 oncogene as a poor-prognostic indicator of hepatoblastomas. (PubMed id 15221005)1, 2 Yamada S....Nakagawara A. (Oncogene 2004)
    3. Association of genome-wide variation with highly sensitive cardiac troponin-T levels in European Americans and Blacks: a meta-analysis from atherosclerosis risk in communities and cardiovascular health studies. (PubMed id 23247143)1 Yu B....Boerwinkle E. (Circ Cardiovasc Genet 2013)
    4. Altered pattern of immunoglobulin hypermutation in mice deficient in Slip-GC protein. (PubMed id 22833677)1 Richter K....Diaz M. (J. Biol. Chem. 2012)
    5. Genome-wide association study of increasing suicidal ideation during antidepressant treatment in the GENDEP project. (PubMed id 20877300)1 Perroud N....McGuffin P. (Pharmacogenomics J. 2012)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (Mol. Med. 2010)
    7. Toward a confocal subcellular atlas of the human proteome. (PubMed id 18029348)1 Barbe L....Andersson-Svahn H. (amp 2008)
    8. DNA sequence and analysis of human chromosome 8. (PubMed id 16421571)2 Nusbaum C....Lander E.S. (Nature 2006)
    9. Immunoaffinity profiling of tyrosine phosphorylation in cancer cells. (PubMed id 15592455)1 Rush J.... Comb M.J. (Nat. Biotechnol. 2005)
    10. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 389643 HGNC: 33550 AceView: HMFN0672 Ensembl:ENSG00000189233 euGenes: HUgn389643
    ECgene: NUGGC H-InvDB: NUGGC

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for NUGGC Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for NUGGC gene:
    Search GeneIP for patents involving NUGGC

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from genOway)
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