Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NUFIP1 Gene

Aliases for NUFIP1 Gene

  • NUFIP1, FMR1 Interacting Protein 1 2 3 5
  • Nuclear Fragile X Mental Retardation Protein Interacting Protein 1 2 3
  • Nuclear FMRP-Interacting Protein 1 3 4
  • Nuclear Fragile X Mental Retardation-Interacting Protein 1 3
  • BA540M5.1 3
  • NUFIP 3

External Ids for NUFIP1 Gene

Previous GeneCards Identifiers for NUFIP1 Gene

  • GC13M043513
  • GC13M039499
  • GC13M044450
  • GC13M043311
  • GC13M044411
  • GC13M045513
  • GC13M026315

Summaries for NUFIP1 Gene

Entrez Gene Summary for NUFIP1 Gene

  • This gene encodes a nuclear RNA binding protein that contains a C2H2 zinc finger motif and a nuclear localization signal. This protein is associated with the nuclear matrix in perichromatin fibrils and, in neurons, localizes to the cytoplasm in association with endoplasmic reticulum ribosomes. This protein interacts with the fragile X mental retardation protein (FMRP), the tumor suppressor protein BRCA1, upregulates RNA polymerase II transcription, and is involved in box C/D snoRNP biogenesis. A pseudogene of this gene resides on chromosome 6q12. [provided by RefSeq, Feb 2012]

GeneCards Summary for NUFIP1 Gene

NUFIP1 (NUFIP1, FMR1 Interacting Protein 1) is a Protein Coding gene. GO annotations related to this gene include identical protein binding and protein binding, bridging.

UniProtKB/Swiss-Prot for NUFIP1 Gene

  • Binds RNA.

Gene Wiki entry for NUFIP1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUFIP1 Gene

Genomics for NUFIP1 Gene

Regulatory Elements for NUFIP1 Gene

Enhancers for NUFIP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH13F044191 1.4 Ensembl ENCODE 11.5 +797.6 797577 1.7 NFRKB INSM2 ZNF76 KLF17 ZNF2 RAD21 RARA YY1 GATA4 ZNF366 RN7SL49P CCDC122 SMIM2 SMIM2-IT1 NUFIP1 SMIM2-AS1 TSC22D1 ENSG00000276854
GH13F044920 0.8 Ensembl ENCODE 6.5 +67.7 67724 2.9 SOX13 ESRRA PKNOX1 SAP130 TEAD4 CEBPG TEAD3 GATA3 CTBP1 ZNF600 TSC22D1 NUFIP1 TRE-TTC2-1 PIR55542
GH13F044930 0.9 Ensembl ENCODE 5.8 +56.8 56803 5.2 MTA2 JUN MAFG FEZF1 NR2F2 ZNF316 JUND MAFF SMARCA4 POLR2A NUFIP1 KCTD4 PIR55542
GH13F044974 0.9 Ensembl ENCODE 0.4 +15.0 14982 1.0 MTA2 IKZF1 EED EBF1 NUFIP1 PIR55542
GH13F044977 0.2 ENCODE 0.4 +12.1 12143 0.2 KLF4 NUFIP1 PIR55542
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NUFIP1 on UCSC Golden Path with GeneCards custom track

Promoters for NUFIP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000055213 183 2201 PKNOX1 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 ZNF143 FOS

Genomic Location for NUFIP1 Gene

44,939,249 bp from pter
44,989,483 bp from pter
50,235 bases
Minus strand

Genomic View for NUFIP1 Gene

Genes around NUFIP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUFIP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUFIP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUFIP1 Gene

Proteins for NUFIP1 Gene

  • Protein details for NUFIP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Nuclear fragile X mental retardation-interacting protein 1
    Protein Accession:
    Secondary Accessions:
    • Q8WVM5
    • Q96SG1

    Protein attributes for NUFIP1 Gene

    495 amino acids
    Molecular mass:
    56300 Da
    Quaternary structure:
    • Interacts with FMR1.
    • Sequence=AAH17745.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NUFIP1 Gene

neXtProt entry for NUFIP1 Gene

Post-translational modifications for NUFIP1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUFIP1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NUFIP1 Gene

Domains & Families for NUFIP1 Gene

Protein Domains for NUFIP1 Gene

Suggested Antigen Peptide Sequences for NUFIP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 C2H2-type zinc finger.
  • Contains 1 C2H2-type zinc finger.
genes like me logo Genes that share domains with NUFIP1: view

No data available for Gene Families for NUFIP1 Gene

Function for NUFIP1 Gene

Molecular function for NUFIP1 Gene

UniProtKB/Swiss-Prot Function:
Binds RNA.

Gene Ontology (GO) - Molecular Function for NUFIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding NAS 15107825
GO:0003723 RNA binding IDA 10556305
GO:0005515 protein binding IPI 10556305
GO:0030515 contributes_to snoRNA binding IDA 17636026
GO:0030674 protein binding, bridging IPI 17636026
genes like me logo Genes that share ontologies with NUFIP1: view

Phenotypes for NUFIP1 Gene

genes like me logo Genes that share phenotypes with NUFIP1: view

Animal Model Products

miRNA for NUFIP1 Gene

miRTarBase miRNAs that target NUFIP1

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUFIP1 Gene

Localization for NUFIP1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUFIP1 Gene

Nucleus. Note=Distributed in the nucleus in a dot-like pattern.

Subcellular locations from

Jensen Localization Image for NUFIP1 Gene COMPARTMENTS Subcellular localization image for NUFIP1 gene
Compartment Confidence
nucleus 5
cytosol 4

Gene Ontology (GO) - Cellular Components for NUFIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005726 perichromatin fibrils IDA 12941608
GO:0005730 nucleolus IDA 12941608
GO:0008023 transcription elongation factor complex IDA 15107825
GO:0016363 nuclear matrix IDA 12941608
genes like me logo Genes that share ontologies with NUFIP1: view

Pathways & Interactions for NUFIP1 Gene

SuperPathways for NUFIP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NUFIP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000492 box C/D snoRNP assembly IMP 17636026
GO:0006396 RNA processing TAS 10556305
GO:0045944 positive regulation of transcription from RNA polymerase II promoter IMP 15107825
GO:0051259 protein oligomerization IDA 17636026
genes like me logo Genes that share ontologies with NUFIP1: view

No data available for Pathways by source and SIGNOR curated interactions for NUFIP1 Gene

Transcripts for NUFIP1 Gene

mRNA/cDNA for NUFIP1 Gene

(1) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(78) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUFIP1 Gene

Nuclear fragile X mental retardation protein interacting protein 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUFIP1 Gene

No ASD Table

Relevant External Links for NUFIP1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NUFIP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NUFIP1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NUFIP1 Gene

This gene is overexpressed in Lung (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NUFIP1 Gene

Protein tissue co-expression partners for NUFIP1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NUFIP1 Gene:


SOURCE GeneReport for Unigene cluster for NUFIP1 Gene:


mRNA Expression by UniProt/SwissProt for NUFIP1 Gene:

Tissue specificity: Expressed in spleen, thymus, prostate, testis, ovary, small intestine, colon, peripheral blood leukocyte, heart, brain, placenta, lung, liver, skeletal muscle, kidney, and pancreas.
genes like me logo Genes that share expression patterns with NUFIP1: view

Primer Products

No data available for mRNA differential expression in normal tissues for NUFIP1 Gene

Orthologs for NUFIP1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUFIP1 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia NUFIP1 34 35
  • 99.33 (n)
(Canis familiaris)
Mammalia NUFIP1 34 35
  • 85.67 (n)
(Bos Taurus)
Mammalia NUFIP1 34 35
  • 84.69 (n)
(Mus musculus)
Mammalia Nufip1 34 16 35
  • 79.92 (n)
(Rattus norvegicus)
Mammalia Nufip1 34
  • 78.42 (n)
(Ornithorhynchus anatinus)
Mammalia NUFIP1 35
  • 53 (a)
(Monodelphis domestica)
Mammalia NUFIP1 35
  • 45 (a)
(Gallus gallus)
Aves NUFIP1 35
  • 36 (a)
(Anolis carolinensis)
Reptilia NUFIP1 35
  • 36 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.7256 34
(Danio rerio)
Actinopterygii zgc:171476 34
  • 54.27 (n)
  • 41 (a)
fruit fly
(Drosophila melanogaster)
Insecta Nufip 35
  • 19 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 27 (a)
Species where no ortholog for NUFIP1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUFIP1 Gene

Gene Tree for NUFIP1 (if available)
Gene Tree for NUFIP1 (if available)

Paralogs for NUFIP1 Gene Pseudogenes for NUFIP1 Gene

genes like me logo Genes that share paralogs with NUFIP1: view

No data available for Paralogs for NUFIP1 Gene

Variants for NUFIP1 Gene

Sequence variations from dbSNP and Humsavar for NUFIP1 Gene

SNP ID Clin Chr 13 pos Sequence Context AA Info Type
rs10492741 -- 44,954,370(-) AGATC(A/G)TTGCA intron-variant
rs10700836 -- 44,956,281(+) AAAAC(-/AG)GGGGA intron-variant
rs1111860 -- 44,990,746(+) TGTTT(C/T)TACTA intron-variant, upstream-variant-2KB
rs111885375 -- 44,968,399(+) GAACA(C/T)TGAGA intron-variant
rs111890313 -- 44,960,324(+) AGTGC(A/G)ATGGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUFIP1 Gene

Variant ID Type Subtype PubMed ID
esv3631945 CNV gain 21293372
nsv1044077 CNV loss 25217958
nsv1120022 CNV deletion 24896259
nsv524788 CNV loss 19592680
nsv974085 CNV duplication 23825009

Variation tolerance for NUFIP1 Gene

Residual Variation Intolerance Score: 74.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.40; 27.48% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUFIP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUFIP1 Gene

Disorders for NUFIP1 Gene

Relevant External Links for NUFIP1

Genetic Association Database (GAD)
Human Genome Epidemiology (HuGE) Navigator
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NUFIP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUFIP1 Gene

Publications for NUFIP1 Gene

  1. A novel RNA-binding nuclear protein that interacts with the fragile X mental retardation (FMR1) protein. (PMID: 10556305) Bardoni B. … Mandel J.-L. (Hum. Mol. Genet. 1999) 2 3 4 64
  2. Human variation in alcohol response is influenced by variation in neuronal signaling genes. (PMID: 20201926) Joslyn G. … White R.L. (Alcohol. Clin. Exp. Res. 2010) 3 46 64
  3. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen J.V. … Mann M. (Cell 2006) 3 4 64
  4. The DNA sequence and analysis of human chromosome 13. (PMID: 15057823) Dunham A. … Ross M.T. (Nature 2004) 3 4 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for NUFIP1 Gene

Sources for NUFIP1 Gene

Loading form....