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Aliases for NUDT6 Gene

Aliases for NUDT6 Gene

  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 6 2 3
  • Antisense Basic Fibroblast Growth Factor 3 4
  • FGF2AS 3 4
  • Nucleoside Diphosphate-Linked Moiety X Motif 6 3
  • Nudix Motif 6 4
  • Protein GFG 4
  • EC 3.6.1.- 4
  • ASFGF2 3
  • FGF-AS 3
  • GFG-1 3
  • GFG1 3

External Ids for NUDT6 Gene

Previous GeneCards Identifiers for NUDT6 Gene

  • GC04M124726
  • GC04M124093
  • GC04M124207
  • GC04M124272
  • GC04M124171
  • GC04M123814
  • GC04M119540

Summaries for NUDT6 Gene

Entrez Gene Summary for NUDT6 Gene

  • This gene overlaps and lies on the opposite strand from FGF2 gene, and is thought to be the FGF2 antisense gene. The two genes are independently transcribed, and their expression shows an inverse relationship, suggesting that this antisense transcript may regulate FGF2 expression. This gene has also been shown to have hormone-regulatory and antiproliferative actions in the pituitary that are independent of FGF2 expression. Alternatively spliced transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Oct 2011]

GeneCards Summary for NUDT6 Gene

NUDT6 (Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 6) is a Protein Coding gene. Diseases associated with NUDT6 include gingival overgrowth and exfoliation syndrome. Among its related pathways are NF-KappaB Family Pathway and NF-KappaB Family Pathway. GO annotations related to this gene include growth factor activity and hydrolase activity.

UniProtKB/Swiss-Prot for NUDT6 Gene

  • May contribute to the regulation of cell proliferation.

Gene Wiki entry for NUDT6 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT6 Gene

Genomics for NUDT6 Gene

Regulatory Elements for NUDT6 Gene

Transcription factor binding sites by QIAGEN in the NUDT6 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NUDT6 Gene

Start:
122,888,697 bp from pter
End:
122,923,004 bp from pter
Size:
34,308 bases
Orientation:
Minus strand

Genomic View for NUDT6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUDT6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT6 Gene

Proteins for NUDT6 Gene

  • Protein details for NUDT6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P53370-NUDT6_HUMAN
    Recommended name:
    Nucleoside diphosphate-linked moiety X motif 6
    Protein Accession:
    P53370
    Secondary Accessions:
    • A8K756
    • O95097
    • Q9UQD9

    Protein attributes for NUDT6 Gene

    Size:
    316 amino acids
    Molecular mass:
    35679 Da
    Quaternary structure:
    • Monomer and homodimer.
    Miscellaneous:
    • This protein is coded from a FGF2 (BFGF) gene antisense transcript

    Three dimensional structures from OCA and Proteopedia for NUDT6 Gene

    Alternative splice isoforms for NUDT6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUDT6 Gene

Proteomics data for NUDT6 Gene at MOPED

Post-translational modifications for NUDT6 Gene

  • Ubiquitination at Lys76
  • Modification sites at PhosphoSitePlus

Other Protein References for NUDT6 Gene

No data available for DME Specific Peptides for NUDT6 Gene

Domains for NUDT6 Gene

Gene Families for NUDT6 Gene

HGNC:
  • NUDT :Nudix motif containing

Suggested Antigen Peptide Sequences for NUDT6 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

P53370

UniProtKB/Swiss-Prot:

NUDT6_HUMAN :
  • P53370
Domain:
  • Contains 1 nudix hydrolase domain.
Family:
  • Belongs to the Nudix hydrolase family.
genes like me logo Genes that share domains with NUDT6: view

Function for NUDT6 Gene

Molecular function for NUDT6 Gene

GENATLAS Biochemistry: nudix (nucleoside diphosphate linked moiety X)-type motif 6,hydrolase,antisense transcript of FGF2,coexpressed with FGF2 in many tissues,and potentially regulator of FGF2 expression,putative mouse cleaning gene whose functions is to cleanse the cell of potentially deleterious endogenous metabolites and to modulate the accumulation of intermediates in biochemical pathways
UniProtKB/Swiss-Prot Function: May contribute to the regulation of cell proliferation.

Enzyme Numbers (IUBMB) for NUDT6 Gene

Gene Ontology (GO) - Molecular Function for NUDT6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008083 growth factor activity TAS 7984147
GO:0016787 hydrolase activity IEA --
genes like me logo Genes that share ontologies with NUDT6: view

Phenotypes for NUDT6 Gene

GenomeRNAi human phenotypes for NUDT6:
genes like me logo Genes that share phenotypes with NUDT6: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NUDT6

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NUDT6 Gene

Localization for NUDT6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUDT6 Gene

Cytoplasm. Nucleus. Mitochondrion. Note=Subcellular location may vary between isoforms.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NUDT6 Gene COMPARTMENTS Subcellular localization image for NUDT6 gene
Compartment Confidence
mitochondrion 5
nucleus 5
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for NUDT6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005634 nucleus IEA --
GO:0005739 mitochondrion IEA --
genes like me logo Genes that share ontologies with NUDT6: view

Pathways for NUDT6 Gene

genes like me logo Genes that share pathways with NUDT6: view

Pathways by source for NUDT6 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for NUDT6 Gene

STRING Interaction Network Preview (showing 1 interactants - click image to see details)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000306070%0d%0a9606.ENSP00000344818%0d%0a
Selected Interacting proteins: ENSP00000306070 P53370-NUDT6_HUMAN for NUDT6 Gene via STRING I2D

Gene Ontology (GO) - Biological Process for NUDT6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0008152 metabolic process IEA --
genes like me logo Genes that share ontologies with NUDT6: view

Compounds for NUDT6 Gene

(45) Novoseek inferred chemical compound relationships for NUDT6 Gene

Compound -log(P) Hits PubMed IDs
saporin 35.3 1
suramin 30.8 9
5-methylthioadenosine 29.3 2
17beta-hydroxysteroid 28.6 1
matrigel 26.9 4
genes like me logo Genes that share compounds with NUDT6: view

Transcripts for NUDT6 Gene

Unigene Clusters for NUDT6 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 6:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NUDT6

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT6 Gene

No ASD Table

Relevant External Links for NUDT6 Gene

GeneLoc Exon Structure for
NUDT6
ECgene alternative splicing isoforms for
NUDT6

Expression for NUDT6 Gene

mRNA expression in normal human tissues for NUDT6 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NUDT6 Gene

SOURCE GeneReport for Unigene cluster for NUDT6 Gene Hs.558459

mRNA Expression by UniProt/SwissProt for NUDT6 Gene

P53370-NUDT6_HUMAN
Tissue specificity: Detected in liver, kidney and esophagus (at protein level). Ubiquitous.
genes like me logo Genes that share expressions with NUDT6: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NUDT6 Gene

Orthologs for NUDT6 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NUDT6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUDT6 35
  • 99.37 (n)
  • 99.05 (a)
NUDT6 36
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NUDT6 35
  • 90.2 (n)
  • 89.08 (a)
NUDT6 36
  • 83 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NUDT6 35
  • 86.58 (n)
  • 83.71 (a)
NUDT6 36
  • 80 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nudt6 35
  • 77.01 (n)
  • 75.91 (a)
Nudt6 16
Nudt6 36
  • 74 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NUDT6 36
  • 66 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nudt6 35
  • 79.83 (n)
  • 81.88 (a)
chicken
(Gallus gallus)
Aves NUDT6 35
  • 75.93 (n)
  • 81.25 (a)
NUDT6 36
  • 71 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NUDT6 36
  • 64 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nudt6 35
  • 69.01 (n)
  • 68.89 (a)
Str.20390 35
zebrafish
(Danio rerio)
Actinopterygii nudt6 35
  • 60.73 (n)
  • 61.82 (a)
nudt6 36
  • 50 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012857 35
  • 43.21 (n)
  • 32.92 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG8128 35
  • 45.26 (n)
  • 39.71 (a)
CG8128 36
  • 29 (a)
OneToOne
CG8128 37
  • 38 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons NUDT8 35
  • 48.91 (n)
  • 40.7 (a)
rice
(Oryza sativa)
Liliopsida Os04g0547900 35
  • 48.86 (n)
  • 41.67 (a)
Species with no ortholog for NUDT6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUDT6 Gene

ENSEMBL:
Gene Tree for NUDT6 (if available)
TreeFam:
Gene Tree for NUDT6 (if available)

Paralogs for NUDT6 Gene

No data available for Paralogs for NUDT6 Gene

Variants for NUDT6 Gene

Sequence variations from dbSNP and Humsavar for NUDT6 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type MAF
rs877284 -- 122,917,913(+) CCTTC(A/G)GAATA intron-variant
rs877808 -- 122,918,872(-) gtaca(C/G)ttaag intron-variant
rs898090 -- 122,907,830(-) CCCCA(A/C)GATAG intron-variant
rs898091 -- 122,918,909(+) TGCCC(A/G)TAACA intron-variant
rs1458757 -- 122,919,841(+) CCAAT(C/T)CTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUDT6 Gene

Variant ID Type Subtype PubMed ID
nsv879867 CNV Gain 21882294
esv2657447 CNV Deletion 23128226

Relevant External Links for NUDT6 Gene

HapMap Linkage Disequilibrium report
NUDT6
Human Gene Mutation Database (HGMD)
NUDT6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUDT6 Gene

Disorders for NUDT6 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (8) Diseases for NUDT6 Gene including...

Search for NUDT6 Gene in MalaCards »

(57) Novoseek inferred disease relationships for NUDT6 Gene

Disease -log(P) Hits PubMed IDs
skin ulcer 36.5 1
scars hypertrophic 36.2 3
vitreoretinopathy proliferative 33.9 1
glioma 29.2 14
gingival overgrowth 26.9 4

Relevant External Links for NUDT6

Genetic Association Database (GAD)
NUDT6
Human Genome Epidemiology (HuGE) Navigator
NUDT6
genes like me logo Genes that share disorders with NUDT6: view

No data available for UniProtKB/Swiss-Prot for NUDT6 Gene

Publications for NUDT6 Gene

  1. Identification and characterization of an antisense RNA transcript (gfg) from the human basic fibroblast growth factor gene. (PMID: 7984147) Murphy P.R. … Knee R.S. (Mol. Endocrinol. 1994) 2 3 4 23
  2. The endogenous fibroblast growth factor-2 antisense gene product regulates pituitary cell growth and hormone production. (PMID: 11266510) Asa S.L. … Ezzat S. (Mol. Endocrinol. 2001) 3 4 23
  3. Alternative splicing of the FGF antisense gene: differential subcellular localization in human tissues and esophageal adenocarcinoma. (PMID: 17569023) Zhang S.C. … Murphy P.R. (J. Mol. Med. 2007) 3 4 23
  4. Characterization of the promoter for the human antisense fibroblast growth factor-2 gene; regulation by Ets in Jurkat T cells. (PMID: 10022609) Gagnon M.L. … Klagsbrun M. (J. Cell. Biochem. 1999) 2 3 4
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4

Products for NUDT6 Gene

Sources for NUDT6 Gene

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