Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NUDT4P1 Gene

Aliases for NUDT4P1 Gene

  • Nudix Hydrolase 4 Pseudogene 1 2 3 5
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 4 Pseudogene 1 2

External Ids for NUDT4P1 Gene

Previous GeneCards Identifiers for NUDT4P1 Gene

  • GC01U990468
  • GC01M142626
  • GC01M143848
  • GC01M145136

Summaries for NUDT4P1 Gene

GeneCards Summary for NUDT4P1 Gene

NUDT4P1 (Nudix Hydrolase 4 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT4P1 Gene

Genomics for NUDT4P1 Gene

Regulatory Elements for NUDT4P1 Gene

Enhancers for NUDT4P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F148742 1 Ensembl ENCODE 0.8 -4.5 -4500 3.0 RNF2 L3MBTL2 MAFG ZBTB40 CREB3 ZNF316 ZNF341 IKZF1 MAFK EMSY NUDT4P1 RNU6-1171P
GH01F148748 0.4 ENCODE 0.8 +0.3 290 1.1 PKNOX1 ATF1 ARID4B SIN3A ZNF48 ZNF2 ELK1 ZNF207 REST TSHZ1 GC01P148750 NUDT4P1
GH01F148740 0.4 Ensembl 0.4 -7.8 -7800 0.8 RNU6-1171P NUDT4P1
GH01F148741 0.2 Ensembl 0.4 -6.7 -6700 1.0 RNU6-1171P NUDT4P1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NUDT4P1 on UCSC Golden Path with GeneCards custom track

Promoters for NUDT4P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001749877 400 1601 ARID4B SIN3A ZNF48 ZNF2 ELK1 ZNF207 REST TSHZ1 ZNF592 ZNF610

Genomic Location for NUDT4P1 Gene

Chromosome:
1
Start:
148,748,600 bp from pter
End:
148,752,401 bp from pter
Size:
3,802 bases
Orientation:
Plus strand

Genomic View for NUDT4P1 Gene

Genes around NUDT4P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUDT4P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUDT4P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT4P1 Gene

Proteins for NUDT4P1 Gene

Post-translational modifications for NUDT4P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUDT4P1 Gene

Domains & Families for NUDT4P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUDT4P1 Gene

Function for NUDT4P1 Gene

Phenotypes for NUDT4P1 Gene

genes like me logo Genes that share phenotypes with NUDT4P1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUDT4P1 Gene

Localization for NUDT4P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NUDT4P1 Gene

Pathways & Interactions for NUDT4P1 Gene

SuperPathways for NUDT4P1 Gene

No Data Available

Interacting Proteins for NUDT4P1 Gene

Gene Ontology (GO) - Biological Process for NUDT4P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUDT4P1 Gene

Transcripts for NUDT4P1 Gene

mRNA/cDNA for NUDT4P1 Gene

(4) Additional mRNA sequences :
(224) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUDT4P1 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 4 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT4P1 Gene

No ASD Table

Relevant External Links for NUDT4P1 Gene

GeneLoc Exon Structure for
NUDT4P1
ECgene alternative splicing isoforms for
NUDT4P1

Expression for NUDT4P1 Gene

mRNA expression in normal human tissues for NUDT4P1 Gene

mRNA differential expression in normal tissues according to GTEx for NUDT4P1 Gene

This gene is overexpressed in Heart - Left Ventricle (x5.3).

NURSA nuclear receptor signaling pathways regulating expression of NUDT4P1 Gene:

NUDT4P1

SOURCE GeneReport for Unigene cluster for NUDT4P1 Gene:

Hs.601274
genes like me logo Genes that share expression patterns with NUDT4P1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NUDT4P1 Gene

Orthologs for NUDT4P1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUDT4P1 Gene

Organism Taxonomy Gene Similarity Type Details
fruit fly
(Drosophila melanogaster)
Insecta CG6391 36
  • 57 (a)
Species where no ortholog for NUDT4P1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • chimpanzee (Pan troglodytes)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NUDT4P1 Gene

ENSEMBL:
Gene Tree for NUDT4P1 (if available)
TreeFam:
Gene Tree for NUDT4P1 (if available)

Paralogs for NUDT4P1 Gene

No data available for Paralogs for NUDT4P1 Gene

Variants for NUDT4P1 Gene

Sequence variations from dbSNP and Humsavar for NUDT4P1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs112714472 -- 148,749,091(-) GACAA(A/T)CCACT nc-transcript-variant
rs112945491 -- 148,748,672(-) CGACT(C/G)CCGCT nc-transcript-variant
rs11484529 -- 148,747,971(-) AGTTT(A/G)GTAAA upstream-variant-2KB
rs11487273 -- 148,751,758(-) TCAGT(A/C)CAAGT nc-transcript-variant
rs12097852 -- 148,747,120(-) CAACA(A/C/G/T)AGCAC upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NUDT4P1 Gene

Variant ID Type Subtype PubMed ID
dgv17n16 CNV deletion 17901297
dgv324n100 CNV gain 25217958
dgv325n100 CNV gain 25217958
dgv327n100 CNV gain 25217958
dgv328n100 CNV gain 25217958
dgv66e199 CNV deletion 23128226
esv2761299 CNV gain+loss 21179565
nsv1003688 CNV gain 25217958
nsv1005055 CNV loss 25217958
nsv1005230 CNV gain 25217958
nsv1008368 CNV gain 25217958
nsv1132304 CNV duplication 24896259
nsv498687 CNV loss 21111241
nsv509457 CNV insertion 20534489
nsv510962 OTHER complex 20534489
nsv946254 CNV duplication 23825009
nsv946255 CNV duplication 23825009
nsv946256 CNV duplication 23825009
nsv946952 CNV duplication 23825009

Relevant External Links for NUDT4P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUDT4P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUDT4P1 Gene

Disorders for NUDT4P1 Gene

Relevant External Links for NUDT4P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUDT4P1

No disorders were found for NUDT4P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUDT4P1 Gene

Publications for NUDT4P1 Gene

  1. Genetic rationale for microheterogeneity of human diphosphoinositol polyphosphate phosphohydrolase type 2. (PMID: 11376937) Caffrey J.J. … Shears S.B. (Gene 2001) 2 3 64
  2. Dependence of Human Colorectal Cells Lacking the FBW7 Tumor Suppressor on the Spindle Assembly Checkpoint. (PMID: 26354767) Bailey M.L. … Hieter P. (Genetics 2015) 3 64
  3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (PMID: 15342556) Suzuki Y. … Sugano S. (Genome Res. 2004) 3 64

Products for NUDT4P1 Gene

Sources for NUDT4P1 Gene

Content
Loading form....