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Aliases for NUDT3 Gene

Aliases for NUDT3 Gene

  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 3 2 3
  • Diadenosine 5,5-P1,P6-Hexaphosphate Hydrolase 1 3 4
  • Nucleoside Diphosphate-Linked Moiety X Motif 3 3 4
  • Nudix Motif 3 3 4
  • DIPP-1 3 4
  • DIPP1 3 4
  • DIPP 3 4
  • Diphosphoinositol Polyphosphate Phosphohydrolase 1 3
  • EC 3.6.1.52 4
  • EC 3.6.1.- 4

External Ids for NUDT3 Gene

Previous GeneCards Identifiers for NUDT3 Gene

  • GC06M034258
  • GC06M034302
  • GC06M034363
  • GC06M033978
  • GC06M034388
  • GC06M034894
  • GC06M035232
  • GC06M035727

Summaries for NUDT3 Gene

Entrez Gene Summary for NUDT3 Gene

  • NUDT3 belongs to the MutT, or Nudix, protein family. Nudix proteins act as homeostatic checkpoints at important stages in nucleoside phosphate metabolic pathways, guarding against elevated levels of potentially dangerous intermediates, like 8-oxo-dGTP, which promotes AT-to-CG transversions (Safrany et al., 1998 [PubMed 9822604]).[supplied by OMIM, Feb 2011]

GeneCards Summary for NUDT3 Gene

NUDT3 (Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 3) is a Protein Coding gene. Among its related pathways are Metabolism and Inositol phosphate metabolism (REACTOME). GO annotations related to this gene include magnesium ion binding and inositol diphosphate tetrakisphosphate diphosphatase activity. An important paralog of this gene is NUDT11.

UniProtKB/Swiss-Prot for NUDT3 Gene

  • Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Gene Wiki entry for NUDT3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT3 Gene

Genomics for NUDT3 Gene

Regulatory Elements for NUDT3 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NUDT3 Gene

Start:
34,279,679 bp from pter
End:
34,392,680 bp from pter
Size:
113,002 bases
Orientation:
Minus strand

Genomic View for NUDT3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NUDT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT3 Gene

Proteins for NUDT3 Gene

  • Protein details for NUDT3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O95989-NUDT3_HUMAN
    Recommended name:
    Diphosphoinositol polyphosphate phosphohydrolase 1
    Protein Accession:
    O95989
    Secondary Accessions:
    • B2R8N4

    Protein attributes for NUDT3 Gene

    Size:
    172 amino acids
    Molecular mass:
    19471 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Note=Binds 3 Mg(2+) ions per subunit.;
    Quaternary structure:
    • Monomer.

    Three dimensional structures from OCA and Proteopedia for NUDT3 Gene

neXtProt entry for NUDT3 Gene

Proteomics data for NUDT3 Gene at MOPED

Post-translational modifications for NUDT3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUDT3 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for NUDT3 Gene

Domains for NUDT3 Gene

Gene Families for NUDT3 Gene

HGNC:
  • NUDT :Nudix motif containing

Protein Domains for NUDT3 Gene

Suggested Antigen Peptide Sequences for NUDT3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O95989

UniProtKB/Swiss-Prot:

NUDT3_HUMAN :
  • O95989
Domain:
  • Contains 1 nudix hydrolase domain.
Family:
  • Belongs to the Nudix hydrolase family. DIPP subfamily.
genes like me logo Genes that share domains with NUDT3: view

Function for NUDT3 Gene

Molecular function for NUDT3 Gene

GENATLAS Biochemistry: nudix (nucleoside diphosphate linked moiety X)-type motif 3,hydrolase,most predominantly expressed in brain,heart,pancreas,liver,putative mouse cleaning gene whose functions is to cleanse the cell of potentially deleterious endogenous metabolites and to modulate the accumulation of intermediates in biochemical pathways
UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=5.9 uM for Ap6A {ECO:0000269 PubMed:10419486, ECO:0000269 PubMed:12370170, ECO:0000269 PubMed:9822604}; KM=7.7 uM for Ap5A {ECO:0000269 PubMed:10419486, ECO:0000269 PubMed:12370170, ECO:0000269 PubMed:9822604}; KM=38 mM for 5-phosphoribose 1-diphosphate {ECO:0000269 PubMed:10419486, ECO:0000269 PubMed:12370170, ECO:0000269 PubMed:9822604}; KM=4.2 nM for PP-InsP5 {ECO:0000269 PubMed:10419486, ECO:0000269 PubMed:12370170, ECO:0000269 PubMed:9822604}; pH dependence: Optimum pH is 7-7.5. {ECO:0000269 PubMed:10419486, ECO:0000269 PubMed:12370170, ECO:0000269 PubMed:9822604};
UniProtKB/Swiss-Prot CatalyticActivity: Diphospho-myo-inositol polyphosphate + H(2)O = myo-inositol polyphosphate + phosphate.
UniProtKB/Swiss-Prot EnzymeRegulation: Inhibited by fluoride and InsP6.
UniProtKB/Swiss-Prot Function: Cleaves a beta-phosphate from the diphosphate groups in PP-InsP5 (diphosphoinositol pentakisphosphate) and [PP]2-InsP4 (bisdiphosphoinositol tetrakisphosphate), suggesting that it may play a role in signal transduction. InsP6 (inositol hexakisphophate) is not a substrate. Acts as a negative regulator of the ERK1/2 pathway. Also able to catalyze the hydrolysis of dinucleoside oligophosphates, with Ap6A and Ap5A being the preferred substrates. The major reaction products are ADP and p4a from Ap6A and ADP and ATP from Ap5A. Also able to hydrolyze 5-phosphoribose 1-diphosphate.

Enzyme Numbers (IUBMB) for NUDT3 Gene

Gene Ontology (GO) - Molecular Function for NUDT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000287 magnesium ion binding IDA 19585659
GO:0008486 diphosphoinositol-polyphosphate diphosphatase activity IDA 10585413
GO:0016787 hydrolase activity --
GO:0052840 inositol diphosphate tetrakisphosphate diphosphatase activity IEA --
GO:0052843 inositol-1-diphosphate-2,3,4,5,6-pentakisphosphate diphosphatase activity IEA --
genes like me logo Genes that share ontologies with NUDT3: view
genes like me logo Genes that share phenotypes with NUDT3: view

Animal Model Products

CRISPR Products

miRNA for NUDT3 Gene

miRTarBase miRNAs that target NUDT3

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for NUDT3 Gene

Localization for NUDT3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUDT3 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NUDT3 Gene COMPARTMENTS Subcellular localization image for NUDT3 gene
Compartment Confidence
cytosol 4
nucleus 3

Gene Ontology (GO) - Cellular Components for NUDT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol TAS --
GO:0070062 extracellular exosome IDA 23376485
genes like me logo Genes that share ontologies with NUDT3: view

Pathways for NUDT3 Gene

genes like me logo Genes that share pathways with NUDT3: view

Pathways by source for NUDT3 Gene

Gene Ontology (GO) - Biological Process for NUDT3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007267 cell-cell signaling TAS 10419486
GO:0015961 diadenosine polyphosphate catabolic process TAS 10419486
GO:0043647 inositol phosphate metabolic process TAS --
GO:0044281 small molecule metabolic process TAS --
GO:0071544 diphosphoinositol polyphosphate catabolic process IDA 10585413
genes like me logo Genes that share ontologies with NUDT3: view

Compounds for NUDT3 Gene

(6) HMDB Compounds for NUDT3 Gene

Compound Synonyms Cas Number PubMed IDs
5-Diphosphoinositol pentakisphosphate
  • 5-diphospho-1D-myo-inositol pentakisphosphate
Not Available
Diadenosine hexaphosphate
  • Adenosine 5'-(heptahydrogen hexaphosphate) P->5'-ester with adenosine
56983-23-4
Magnesium
  • Magnesium
7439-95-4
Myo-inositol hexakisphosphate
  • 1D-myo-Inositol 1,2,3,4,5,6-hexakisphosphate
83-86-3
Phosphate
  • NFB Orthophosphate
14265-44-2

(4) Novoseek inferred chemical compound relationships for NUDT3 Gene

Compound -log(P) Hits PubMed IDs
ap(6)a 93.8 1
dipp 91.4 5
prpp 76.3 2
pyrophosphate 57.4 2
genes like me logo Genes that share compounds with NUDT3: view

Transcripts for NUDT3 Gene

mRNA/cDNA for NUDT3 Gene

(4) Selected AceView cDNA sequences:
(7) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUDT3 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 3:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NUDT3

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT3 Gene

No ASD Table

Relevant External Links for NUDT3 Gene

GeneLoc Exon Structure for
NUDT3
ECgene alternative splicing isoforms for
NUDT3

Expression for NUDT3 Gene

mRNA expression in normal human tissues for NUDT3 Gene

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for NUDT3 Gene

SOURCE GeneReport for Unigene cluster for NUDT3 Gene Hs.188882

mRNA Expression by UniProt/SwissProt for NUDT3 Gene

O95989-NUDT3_HUMAN
Tissue specificity: Widely expressed. Expressed at higher level in brain, heart, pancreas and liver. Also expressed in placenta, lung and kidney.
genes like me logo Genes that share expressions with NUDT3: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NUDT3 Gene

Orthologs for NUDT3 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUDT3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia RPS10 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NUDT3 35
  • 91.86 (n)
  • 95.35 (a)
NUDT3 36
  • 95 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NUDT3 35
  • 95.74 (n)
  • 98.84 (a)
NUDT3 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nudt3 35
  • 91.07 (n)
  • 97.62 (a)
Nudt3 16
Nudt3 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NUDT3 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NUDT3 36
  • 93 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nudt3 35
  • 88.89 (n)
  • 97.02 (a)
chicken
(Gallus gallus)
Aves NUDT3 35
  • 85.8 (n)
  • 93.49 (a)
NUDT3 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NUDT3 36
  • 91 (a)
OneToOne
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.7396 35
zebrafish
(Danio rerio)
Actinopterygii nudt3a 36
  • 84 (a)
OneToMany
nudt3b 35
  • 76.22 (n)
  • 84.8 (a)
nudt3b 36
  • 77 (a)
OneToMany
zgc55746 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009901 35
  • 55.41 (n)
  • 57.32 (a)
fruit fly
(Drosophila melanogaster)
Insecta Aps 35
  • 56.04 (n)
  • 57.5 (a)
Aps 36
  • 53 (a)
OneToMany
CG6391 37
  • 57 (a)
worm
(Caenorhabditis elegans)
Secernentea Y92H12BL.5 35
  • 49.48 (n)
  • 43.75 (a)
Y92H12BL.5 36
  • 38 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8787 36
  • 38 (a)
OneToMany
Species with no ortholog for NUDT3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for NUDT3 Gene

ENSEMBL:
Gene Tree for NUDT3 (if available)
TreeFam:
Gene Tree for NUDT3 (if available)

Paralogs for NUDT3 Gene

Paralogs for NUDT3 Gene

Selected SIMAP similar genes for NUDT3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NUDT3: view

Variants for NUDT3 Gene

Structural Variations from Database of Genomic Variants (DGV) for NUDT3 Gene

Variant ID Type Subtype PubMed ID
nsv5253 CNV Insertion 18451855
esv29044 CNV Loss 19812545
esv2731907 CNV Deletion 23290073
dgv1115e199 CNV Deletion 23128226
esv33496 CNV Loss 17666407
esv2674771 CNV Deletion 23128226

Relevant External Links for NUDT3 Gene

HapMap Linkage Disequilibrium report
NUDT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for NUDT3 Gene

Disorders for NUDT3 Gene

Relevant External Links for NUDT3

Genetic Association Database (GAD)
NUDT3
genes like me logo Genes that share disorders with NUDT3: view

No data available for UniProtKB/Swiss-Prot for NUDT3 Gene

Publications for NUDT3 Gene

  1. A novel context for the 'MutT' module, a guardian of cell integrity, in a diphosphoinositol polyphosphate phosphohydrolase. (PMID: 9822604) Safrany S.T. … Shears S.B. (EMBO J. 1998) 2 3 4 23
  2. The diadenosine hexaphosphate hydrolases from Schizosaccharomyces pombe and Saccharomyces cerevisiae are homologues of the human diphosphoinositol polyphosphate phosphohydrolase. Overlapping substrate specificities in a MutT-type protein. (PMID: 10419486) Safrany S.T. … Shears S.B. (J. Biol. Chem. 1999) 3 4 23
  3. Nudix hydrolases that degrade dinucleoside and diphosphoinositol polyphosphates also have 5-phosphoribosyl 1-pyrophosphate (PRPP) pyrophosphatase activity that generates the glycolytic activator ribose 1,5-bisphosphate. (PMID: 12370170) Fisher D.I. … Cartwright J.L. (J. Biol. Chem. 2002) 3 4 23
  4. Crystal structure of human diphosphoinositol phosphatase 1. (PMID: 19585659) Thorsell A.G. … Hallberg B.M. (Proteins 2009) 3 4
  5. Identification of 15 loci influencing height in a Korean population. (PMID: 19893584) Kim J.J. … Lee J.K. (J. Hum. Genet. 2010) 3 48

Products for NUDT3 Gene

Sources for NUDT3 Gene

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