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Aliases for NUDT16P1 Gene

Aliases for NUDT16P1 Gene

  • Nudix Hydrolase 16 Pseudogene 1 2 3 5
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 16 Pseudogene 1 2 3
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 16 Pseudogene 2
  • Nudix-Type Motif 16 Pseudogene 3
  • NUDT16P 3

External Ids for NUDT16P1 Gene

Previous HGNC Symbols for NUDT16P1 Gene

  • NUDT16P

Previous GeneCards Identifiers for NUDT16P1 Gene

  • GC03P131080
  • GC03P128466

Summaries for NUDT16P1 Gene

GeneCards Summary for NUDT16P1 Gene

NUDT16P1 (Nudix Hydrolase 16 Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT16P1 Gene

Genomics for NUDT16P1 Gene

Regulatory Elements for NUDT16P1 Gene

Enhancers for NUDT16P1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F131361 0.2 ENCODE 15.5 +0.2 188 1.8 CTCF RFX1 L3MBTL2 NRF1 TEAD4 YY1 POLR2A NFYB ZBTB33 ZFX NUDT16P1 LOC339874
GH03F131355 0.2 ENCODE 7.5 -5.5 -5529 1.1 NUDT16P1 NUDT16 GC03P131359 GC03M131093 RNU6-726P
GH03F131215 1 Ensembl ENCODE 7.4 -144.4 -144416 2.9 CTCF JUN FEZF1 ZIC2 CTBP1 ZBTB48 PATZ1 PRDM10 FOS SP3 NUDT16P1 NUDT16 GC03M131093 RNU6-726P GC03P131359
GH03F131221 1.2 Ensembl ENCODE 4.9 -140.1 -140052 1.2 ASTE1 NEK11 NUDT16P1 GC03M131093 RNU6-726P GC03P131359
GH03F131371 0.9 FANTOM5 Ensembl 0.4 +9.7 9656 1.0 NR2F6 MNT KDM1A MRPL3 SNORA58 NEK11 NUDT16 NUDT16P1 LOC339874
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NUDT16P1 on UCSC Golden Path with GeneCards custom track

Promoters for NUDT16P1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001483593 -245 2001 CTCF RFX1 NRF1 TEAD4 YY1 GATA3 POLR2A NFYB ZBTB33 ZFX

Genomic Location for NUDT16P1 Gene

Chromosome:
3
Start:
131,361,845 bp from pter
End:
131,365,122 bp from pter
Size:
3,278 bases
Orientation:
Plus strand

Genomic View for NUDT16P1 Gene

Genes around NUDT16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUDT16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUDT16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT16P1 Gene

Proteins for NUDT16P1 Gene

Post-translational modifications for NUDT16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUDT16P1 Gene

Domains & Families for NUDT16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUDT16P1 Gene

Function for NUDT16P1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUDT16P1 Gene

Localization for NUDT16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NUDT16P1 Gene

Pathways & Interactions for NUDT16P1 Gene

SuperPathways for NUDT16P1 Gene

No Data Available

Interacting Proteins for NUDT16P1 Gene

Gene Ontology (GO) - Biological Process for NUDT16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUDT16P1 Gene

Transcripts for NUDT16P1 Gene

mRNA/cDNA for NUDT16P1 Gene

Unigene Clusters for NUDT16P1 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT16P1 Gene

No ASD Table

Relevant External Links for NUDT16P1 Gene

GeneLoc Exon Structure for
NUDT16P1
ECgene alternative splicing isoforms for
NUDT16P1

Expression for NUDT16P1 Gene

mRNA expression in normal human tissues for NUDT16P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NUDT16P1 Gene:

NUDT16P1

SOURCE GeneReport for Unigene cluster for NUDT16P1 Gene:

Hs.380350
genes like me logo Genes that share expression patterns with NUDT16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NUDT16P1 Gene

Orthologs for NUDT16P1 Gene

Evolution for NUDT16P1 Gene

ENSEMBL:
Gene Tree for NUDT16P1 (if available)
TreeFam:
Gene Tree for NUDT16P1 (if available)

No data available for Orthologs for NUDT16P1 Gene

Paralogs for NUDT16P1 Gene

No data available for Paralogs for NUDT16P1 Gene

Variants for NUDT16P1 Gene

Sequence variations from dbSNP and Humsavar for NUDT16P1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs111643197 -- 131,361,238(+) TTATC(A/G)CTGCT intron-variant, upstream-variant-2KB
rs112364805 -- 131,361,776(+) CACCG(C/G)TCGCT intron-variant, upstream-variant-2KB
rs112755974 -- 131,362,388(+) TCGAG(C/T)AGCTG intron-variant, nc-transcript-variant
rs113388799 -- 131,361,204(+) TGCCT(A/G)TGGCC intron-variant, upstream-variant-2KB
rs113651891 -- 131,361,073(+) TCCCA(C/G)TCCTG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NUDT16P1 Gene

Variant ID Type Subtype PubMed ID
dgv934e214 CNV loss 21293372
esv3597781 CNV gain 21293372
esv3597785 CNV gain 21293372
esv3597788 CNV gain 21293372

Relevant External Links for NUDT16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUDT16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUDT16P1 Gene

Disorders for NUDT16P1 Gene

Relevant External Links for NUDT16P1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUDT16P1

No disorders were found for NUDT16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUDT16P1 Gene

Publications for NUDT16P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NUDT16P1 Gene

Sources for NUDT16P1 Gene

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