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Aliases for NUDT16P1 Gene

Aliases for NUDT16P1 Gene

  • Nudix Hydrolase 16 Pseudogene 1 2 3 5
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 16 Pseudogene 1 2 3
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 16 Pseudogene 2
  • Nudix-Type Motif 16 Pseudogene 3
  • NUDT16P 3

External Ids for NUDT16P1 Gene

Previous HGNC Symbols for NUDT16P1 Gene

  • NUDT16P

Previous GeneCards Identifiers for NUDT16P1 Gene

  • GC03P131080
  • GC03P128466

Summaries for NUDT16P1 Gene

GeneCards Summary for NUDT16P1 Gene

NUDT16P1 (Nudix Hydrolase 16 Pseudogene 1) is a Pseudogene.

Additional gene information for NUDT16P1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT16P1 Gene

Genomics for NUDT16P1 Gene

GeneHancer (GH) Regulatory Elements for NUDT16P1 Gene

Promoters and enhancers for NUDT16P1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I131360 Promoter/Enhancer 1.4 Ensembl ENCODE dbSUPER 565.6 +0.0 25 2.1 CTCF FOXA2 USF1 ATF1 TAF1 MAX YY1 CTBP1 POLR2A EGR1 NUDT16P1 GC03M131359 NEK11 LOC339874
GH03I131215 Enhancer 1 Ensembl ENCODE 7.4 -144.4 -144416 2.9 NFIB FEZF1 ZNF335 FOS SP3 ZNF398 ZEB2 ZNF843 ZFP69B NFIC NUDT16P1 NUDT16 GC03M131093 RNU6-726P GC03P131359 NEK11
GH03I131355 Enhancer 0.2 ENCODE 7.5 -5.5 -5529 1.1 NUDT16P1 NUDT16 GC03P131359 LOC339874 GC03M131093 RNU6-726P
GH03I131221 Enhancer 0.2 ENCODE 4.9 -140.1 -140052 1.2 NEK11 ASTE1 NUDT16P1 RNU6-726P GC03M131093 GC03P131359
GH03I131371 Enhancer 0.8 FANTOM5 Ensembl dbSUPER 0.4 +9.9 9855 1 MNT KDM1A SNORA58 NEK11 NUDT16 NUDT16P1 LOC339874
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NUDT16P1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NUDT16P1 Gene

Genomic Locations for NUDT16P1 Gene
chr3:131,361,845-131,365,122
(GRCh38/hg38)
Size:
3,278 bases
Orientation:
Plus strand
chr3:131,080,689-131,083,966
(GRCh37/hg19)

Genomic View for NUDT16P1 Gene

Genes around NUDT16P1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUDT16P1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUDT16P1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT16P1 Gene

Proteins for NUDT16P1 Gene

Post-translational modifications for NUDT16P1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUDT16P1 Gene

Domains & Families for NUDT16P1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUDT16P1 Gene

Function for NUDT16P1 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUDT16P1 Gene

Localization for NUDT16P1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NUDT16P1 Gene

Pathways & Interactions for NUDT16P1 Gene

SuperPathways for NUDT16P1 Gene

No Data Available

Interacting Proteins for NUDT16P1 Gene

Gene Ontology (GO) - Biological Process for NUDT16P1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUDT16P1 Gene

Drugs & Compounds for NUDT16P1 Gene

No Compound Related Data Available

Transcripts for NUDT16P1 Gene

mRNA/cDNA for NUDT16P1 Gene

Unigene Clusters for NUDT16P1 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 16 pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT16P1 Gene

No ASD Table

Relevant External Links for NUDT16P1 Gene

GeneLoc Exon Structure for
NUDT16P1
ECgene alternative splicing isoforms for
NUDT16P1

Expression for NUDT16P1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUDT16P1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NUDT16P1 Gene:

NUDT16P1

SOURCE GeneReport for Unigene cluster for NUDT16P1 Gene:

Hs.380350
genes like me logo Genes that share expression patterns with NUDT16P1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUDT16P1 Gene

Orthologs for NUDT16P1 Gene

Evolution for NUDT16P1 Gene

ENSEMBL:
Gene Tree for NUDT16P1 (if available)
TreeFam:
Gene Tree for NUDT16P1 (if available)

No data available for Orthologs for NUDT16P1 Gene

Paralogs for NUDT16P1 Gene

No data available for Paralogs for NUDT16P1 Gene

Variants for NUDT16P1 Gene

Sequence variations from dbSNP and Humsavar for NUDT16P1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000258090 -- 131,362,355(+) G/A non_coding_transcript_variant
rs1001072319 -- 131,361,142(+) T/G upstream_transcript_variant
rs1001199865 -- 131,363,421(+) T/C non_coding_transcript_variant
rs1001624516 -- 131,362,879(+) C/T intron_variant
rs1001690212 -- 131,363,077(+) C/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NUDT16P1 Gene

Variant ID Type Subtype PubMed ID
dgv934e214 CNV loss 21293372
esv3597781 CNV gain 21293372
esv3597785 CNV gain 21293372
esv3597788 CNV gain 21293372

Additional Variant Information for NUDT16P1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUDT16P1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUDT16P1 Gene

Disorders for NUDT16P1 Gene

Additional Disease Information for NUDT16P1

No disorders were found for NUDT16P1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUDT16P1 Gene

Publications for NUDT16P1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) Oláh J … Ovádi J (The Journal of biological chemistry 2011) 3 58
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NUDT16P1 Gene

Sources for NUDT16P1 Gene

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