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Aliases for NUDT12 Gene

Aliases for NUDT12 Gene

  • Nudix Hydrolase 12 2 3 5
  • EC 3.6.1.22 4 61
  • Nudix (Nucleoside Diphosphate Linked Moiety X)-Type Motif 12 2
  • Nucleoside Diphosphate Linked Moiety X-Type Motif 12 2
  • Nucleoside Diphosphate-Linked Moiety X Motif 12 4
  • Nudix Motif 12 4

External Ids for NUDT12 Gene

Previous GeneCards Identifiers for NUDT12 Gene

  • GC05M102544
  • GC05M103315
  • GC05M102915
  • GC05M102960
  • GC05M102912
  • GC05M098066
  • GC05M102884

Summaries for NUDT12 Gene

Entrez Gene Summary for NUDT12 Gene

  • Nucleotides are involved in numerous biochemical reactions and pathways within the cell as substrates, cofactors, and effectors. Nudix hydrolases, such as NUDT12, regulate the concentrations of individual nucleotides and of nucleotide ratios in response to changing circumstances (Abdelraheim et al., 2003 [PubMed 12790796]).[supplied by OMIM, Mar 2008]

GeneCards Summary for NUDT12 Gene

NUDT12 (Nudix Hydrolase 12) is a Protein Coding gene. Among its related pathways are NAD metabolism and Peroxisome. GO annotations related to this gene include hydrolase activity and NAD+ diphosphatase activity. An important paralog of this gene is NUDT13.

UniProtKB/Swiss-Prot for NUDT12 Gene

  • Hydrolyzes NAD(P)H to NMNH and AMP (2,5-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Gene Wiki entry for NUDT12 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDT12 Gene

Genomics for NUDT12 Gene

Regulatory Elements for NUDT12 Gene

Enhancers for NUDT12 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G103561 1 ENCODE 28 +0.3 297 2.0 ATF1 CREB3L1 SIN3A E2F7 ZNF2 YY1 ETS1 ELK1 ZNF143 ZNF263 NUDT12 LINC02115
GH05G103531 0.6 ENCODE 26.3 +30.3 30339 1.4 MTA2 SIN3A ATF2 PRDM6 JUND ZNF366 FOS PRDM1 SP7 NUDT12 LINC02115 PDZPH1P
GH05G103522 0.7 ENCODE 12.2 +39.6 39620 2.2 TFE3 FOXA2 NR2F1 BHLHE40 EP300 ZNF664 PRDM6 NR2C1 KLF9 NR2F6 NUDT12 PDZPH1P ENSG00000250567
GH05G103568 0.6 ENCODE 5.7 -6.7 -6719 1.6 ZNF316 ATF3 HNF4G HNF4A EP300 MAFK YY1 NUDT12 LOC105379107
GH05G103565 0.6 ENCODE 0.7 -3.1 -3121 1.2 OSR2 PRDM6 ZNF366 CEBPA FEZF1 PRDM4 ZNF843 ZNF18 NUDT12 LOC105379107
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NUDT12 on UCSC Golden Path with GeneCards custom track

Promoters for NUDT12 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000184748 303 1799 CREB3L1 SIN3A E2F7 ZNF2 ETS1 TCF12 ELK1 ZNF143 ZNF263 SP3

Genomic Location for NUDT12 Gene

Chromosome:
5
Start:
103,548,855 bp from pter
End:
103,562,804 bp from pter
Size:
13,950 bases
Orientation:
Minus strand

Genomic View for NUDT12 Gene

Genes around NUDT12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUDT12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUDT12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDT12 Gene

Proteins for NUDT12 Gene

  • Protein details for NUDT12 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BQG2-NUD12_HUMAN
    Recommended name:
    Peroxisomal NADH pyrophosphatase NUDT12
    Protein Accession:
    Q9BQG2
    Secondary Accessions:
    • B3KUW2
    • Q8TAL7

    Protein attributes for NUDT12 Gene

    Size:
    462 amino acids
    Molecular mass:
    52076 Da
    Cofactor:
    Name=Mg(2+); Xref=ChEBI:CHEBI:18420; Name=Mn(2+); Xref=ChEBI:CHEBI:29035;
    Quaternary structure:
    No Data Available

neXtProt entry for NUDT12 Gene

Selected DME Specific Peptides for NUDT12 Gene

Q9BQG2:
  • KRNNSDWL
  • YLAQPEKITL
  • QQPEVRLCQLNY
  • EEEDGLV
  • RQTALDIA
  • EIEDARWF
  • ILSHSPSLLNETSENGW
  • CLAGFIEPGE
  • DKNEIED
  • VQFLLEKGCDRS
  • FWGYKHIANLLA
  • AKGGKKPWFLTNEV
  • DIKDYLAQPE
  • YPRVDPVVIM
  • SAAEGDIAKLT
  • ECENYFS
  • DVLTKGKQQAFFVPPSRAIAHQLIKHW
  • CQPWPMPSSLMIGCLA

Post-translational modifications for NUDT12 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUDT12 Gene

Domains & Families for NUDT12 Gene

Suggested Antigen Peptide Sequences for NUDT12 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BQG2

UniProtKB/Swiss-Prot:

NUD12_HUMAN :
  • Belongs to the Nudix hydrolase family. NudC subfamily.
Family:
  • Belongs to the Nudix hydrolase family. NudC subfamily.
genes like me logo Genes that share domains with NUDT12: view

Function for NUDT12 Gene

Molecular function for NUDT12 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties:
Kinetic parameters: KM=11 uM for NADH {ECO:0000269 PubMed:12790796}; KM=16 uM for NADPH {ECO:0000269 PubMed:12790796}; KM=190 uM for NAD {ECO:0000269 PubMed:12790796}; pH dependence: Optimum pH is 8-9. {ECO:0000269 PubMed:12790796};
UniProtKB/Swiss-Prot CatalyticActivity:
NAD(H) + H(2)O = AMP + NMN(H).
UniProtKB/Swiss-Prot Function:
Hydrolyzes NAD(P)H to NMNH and AMP (2,5-ADP), and diadenosine diphosphate to AMP. Has also activity towards NAD(P)(+), ADP-ribose and diadenosine triphosphate. May act to regulate the concentration of peroxisomal nicotinamide nucleotide cofactors required for oxidative metabolism in this organelle.

Enzyme Numbers (IUBMB) for NUDT12 Gene

Gene Ontology (GO) - Molecular Function for NUDT12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000210 NAD+ diphosphatase activity IDA 12790796
GO:0005515 protein binding IPI 25416956
GO:0016787 hydrolase activity IEA --
GO:0035529 NADH pyrophosphatase activity TAS --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with NUDT12: view
genes like me logo Genes that share phenotypes with NUDT12: view

Animal Model Products

  • Taconic Biosciences Mouse Models for NUDT12

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUDT12 Gene

Localization for NUDT12 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUDT12 Gene

Peroxisome.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUDT12 gene
Compartment Confidence
peroxisome 5
nucleus 5

Gene Ontology (GO) - Cellular Components for NUDT12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005737 cytoplasm IEA --
GO:0005777 peroxisome IEA,IDA 12790796
GO:0005782 peroxisomal matrix TAS --
genes like me logo Genes that share ontologies with NUDT12: view

Pathways & Interactions for NUDT12 Gene

genes like me logo Genes that share pathways with NUDT12: view

Pathways by source for NUDT12 Gene

Gene Ontology (GO) - Biological Process for NUDT12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006742 NADP catabolic process IDA 12790796
GO:0019677 NAD catabolic process IDA 12790796
GO:0034356 NAD biosynthesis via nicotinamide riboside salvage pathway TAS --
genes like me logo Genes that share ontologies with NUDT12: view

No data available for SIGNOR curated interactions for NUDT12 Gene

Drugs & Compounds for NUDT12 Gene

(6) Drugs for NUDT12 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Water Approved Pharma 0
Adenosine monophosphate Approved Nutra 0
Manganese Approved Nutra 34
NAD Pharma Full agonist, Agonist 0
Magnesium Nutra 0

(5) Additional Compounds for NUDT12 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
beta-nicotinamide D-ribonucleotide
Nicotinamide ribotide
  • 3-(Aminocarbonyl)-1-(5-O-phosphono-b-D-ribofuranosyl)-Pyridinium hydroxide inner salt
  • 3-(Aminocarbonyl)-1-(5-O-phosphono-b-D-ribofuranosyl)-Pyridinium inner salt
  • 3-(Aminocarbonyl)-1-(5-O-phosphono-beta-delta-ribofuranosyl)-Pyridinium hydroxide inner salt
  • 3-(Aminocarbonyl)-1-(5-O-phosphono-beta-delta-ribofuranosyl)-Pyridinium inner salt
  • 3-Carbamoyl-1-b-D-ribofuranosylpyridinium hydroxide 5'-phosphate inner salt
1094-61-7
nicotinate beta-D-ribonucleotide
Nicotinic acid adenine dinucleotide
  • Deamido-NAD+
  • Deamidonicotinamide adenine dinucleoetide
  • Deamino-nad+
  • NAAD
  • NaADN
6450-77-7
Nicotinic acid mononucleotide
  • 3-Carboxy-1-(5-O-phosphono-b-D-ribofuranosyl)-Pyridinium inner salt
  • 3-Carboxy-1-(5-O-phosphono-beta-D-ribofuranosyl)-Pyridinium inner salt
  • 3-Carboxy-1-(5-O-phosphono-beta-delta-ribofuranosyl)-Pyridinium inner salt
  • 3-Carboxy-1-beta-D-ribofuranosylpyridinium hydroxide 5'-phosphate inner salt
  • 3-Carboxy-1-beta-delta-ribofuranosylpyridinium hydroxide 5'-phosphate inner salt
321-02-8
genes like me logo Genes that share compounds with NUDT12: view

Transcripts for NUDT12 Gene

Unigene Clusters for NUDT12 Gene

Nudix (nucleoside diphosphate linked moiety X)-type motif 12:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUDT12 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b · 3c · 3d · 3e ^ 4a · 4b · 4c ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8
SP1: - - - -
SP2: - - -
SP3: - - - -
SP4: -
SP5: -
SP6:
SP7:

Relevant External Links for NUDT12 Gene

GeneLoc Exon Structure for
NUDT12
ECgene alternative splicing isoforms for
NUDT12

Expression for NUDT12 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUDT12 Gene

Protein differential expression in normal tissues from HIPED for NUDT12 Gene

This gene is overexpressed in Platelet (41.3) and Urine (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NUDT12 Gene



NURSA nuclear receptor signaling pathways regulating expression of NUDT12 Gene:

NUDT12

SOURCE GeneReport for Unigene cluster for NUDT12 Gene:

Hs.434289

Evidence on tissue expression from TISSUES for NUDT12 Gene

  • Nervous system(4.2)
  • Eye(4.1)
genes like me logo Genes that share expression patterns with NUDT12: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUDT12 Gene

Orthologs for NUDT12 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NUDT12 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUDT12 34 35
  • 99.35 (n)
cow
(Bos Taurus)
Mammalia NUDT12 34 35
  • 92.57 (n)
dog
(Canis familiaris)
Mammalia NUDT12 34 35
  • 92.25 (n)
mouse
(Mus musculus)
Mammalia Nudt12 34 16 35
  • 84.13 (n)
rat
(Rattus norvegicus)
Mammalia Nudt12 34
  • 83.98 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NUDT12 35
  • 80 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NUDT12 35
  • 78 (a)
OneToOne
chicken
(Gallus gallus)
Aves NUDT12 34 35
  • 75.9 (n)
lizard
(Anolis carolinensis)
Reptilia NUDT12 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nudt12 34
  • 68.21 (n)
zebrafish
(Danio rerio)
Actinopterygii nudt12 34 35
  • 58.26 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NPY1 34 35 37
  • 46.12 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D03146g 34
  • 44.84 (n)
soybean
(Glycine max)
eudicotyledons Gma.1733 34
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC1778.03c 34
  • 48.52 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU00293 34
  • 45.92 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.3106 35
  • 42 (a)
OneToOne
Species where no ortholog for NUDT12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUDT12 Gene

ENSEMBL:
Gene Tree for NUDT12 (if available)
TreeFam:
Gene Tree for NUDT12 (if available)

Paralogs for NUDT12 Gene

Paralogs for NUDT12 Gene

(1) SIMAP similar genes for NUDT12 Gene using alignment to 2 proteins:

genes like me logo Genes that share paralogs with NUDT12: view

Variants for NUDT12 Gene

Sequence variations from dbSNP and Humsavar for NUDT12 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000040794 -- 103,555,140(+) GTATT(A/T)TTACT intron-variant
rs1000180213 -- 103,559,897(+) AAAAT(G/T)GTGCT intron-variant
rs1000458769 -- 103,558,123(+) TTCAA(C/T)AGCAA intron-variant
rs1000701442 -- 103,563,703(+) TTTCT(G/T)TTTTT upstream-variant-2KB
rs1000844536 -- 103,559,965(+) AAACA(A/G)GCAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUDT12 Gene

Variant ID Type Subtype PubMed ID
esv3606077 CNV gain 21293372

Variation tolerance for NUDT12 Gene

Residual Variation Intolerance Score: 37.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.07; 37.85% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUDT12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUDT12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUDT12 Gene

Disorders for NUDT12 Gene

Relevant External Links for NUDT12

Genetic Association Database (GAD)
NUDT12
Human Genome Epidemiology (HuGE) Navigator
NUDT12
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUDT12

No disorders were found for NUDT12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUDT12 Gene

Publications for NUDT12 Gene

  1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. Mammalian NADH diphosphatases of the Nudix family: cloning and characterization of the human peroxisomal NUDT12 protein. (PMID: 12790796) Abdelraheim S.R. … McLennan A.G. (Biochem. J. 2003) 3 4 64

Products for NUDT12 Gene

Sources for NUDT12 Gene

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