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Aliases for NUDCD1 Gene

Aliases for NUDCD1 Gene

  • NudC Domain Containing 1 2 3 5
  • Chronic Myelogenous Leukemia Tumor Antigen 66 3 4
  • Tumor Antigen CML66 3 4
  • CML66 3 4
  • OVA66 3

External Ids for NUDCD1 Gene

Previous GeneCards Identifiers for NUDCD1 Gene

  • GC08M110323
  • GC08M105575

Summaries for NUDCD1 Gene

GeneCards Summary for NUDCD1 Gene

NUDCD1 (NudC Domain Containing 1) is a Protein Coding gene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUDCD1 Gene

Genomics for NUDCD1 Gene

Regulatory Elements for NUDCD1 Gene

Enhancers for NUDCD1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NUDCD1 on UCSC Golden Path with GeneCards custom track

Promoters for NUDCD1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NUDCD1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NUDCD1 Gene

109,240,919 bp from pter
109,334,385 bp from pter
93,467 bases
Minus strand

Genomic View for NUDCD1 Gene

Genes around NUDCD1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUDCD1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUDCD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUDCD1 Gene

Proteins for NUDCD1 Gene

  • Protein details for NUDCD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    NudC domain-containing protein 1
    Protein Accession:
    Secondary Accessions:
    • B4DVX6
    • Q4G130
    • Q8NDQ5
    • Q8NG18
    • Q96SI4
    • Q9BVR5

    Protein attributes for NUDCD1 Gene

    583 amino acids
    Molecular mass:
    66756 Da
    Quaternary structure:
    No Data Available
    • Isoform 1 is the dominant immunogenic isoform and is capable of eliciting a humoral response in individuals with a variety of solid tumors. Expression of isoform 1 in a wide variety of malignancies as well as the presence of an immunogenic epitope suggest that it may be a suitable target for antigen-specific immunotherapy.

    Alternative splice isoforms for NUDCD1 Gene


neXtProt entry for NUDCD1 Gene

Proteomics data for NUDCD1 Gene at MOPED

Post-translational modifications for NUDCD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUDCD1 Gene

No data available for DME Specific Peptides for NUDCD1 Gene

Domains & Families for NUDCD1 Gene

Protein Domains for NUDCD1 Gene


Suggested Antigen Peptide Sequences for NUDCD1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 CS domain.
  • Contains 1 CS domain.
genes like me logo Genes that share domains with NUDCD1: view

No data available for Gene Families for NUDCD1 Gene

Function for NUDCD1 Gene

genes like me logo Genes that share phenotypes with NUDCD1: view

Animal Model Products

CRISPR Products

miRNA for NUDCD1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUDCD1 Gene

Localization for NUDCD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUDCD1 Gene

Isoform 1: Cytoplasm. Nucleus.
Isoform 2: Cytoplasm.
Isoform 3: Cytoplasm. Nucleus.

Subcellular locations from

Jensen Localization Image for NUDCD1 Gene COMPARTMENTS Subcellular localization image for NUDCD1 gene
Compartment Confidence
nucleus 5
cytosol 3

No data available for Gene Ontology (GO) - Cellular Components for NUDCD1 Gene

Pathways & Interactions for NUDCD1 Gene

SuperPathways for NUDCD1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NUDCD1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NUDCD1 Gene

Drugs & Compounds for NUDCD1 Gene

No Compound Related Data Available

Transcripts for NUDCD1 Gene

Unigene Clusters for NUDCD1 Gene

NudC domain containing 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NUDCD1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12
SP1: -
SP2: - -
SP3: -

Relevant External Links for NUDCD1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NUDCD1 Gene

mRNA expression in normal human tissues for NUDCD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NUDCD1 Gene

This gene is overexpressed in Breast (30.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for NUDCD1 Gene

SOURCE GeneReport for Unigene cluster for NUDCD1 Gene Hs.380291

mRNA Expression by UniProt/SwissProt for NUDCD1 Gene

Tissue specificity: Isoform 1 is specifically expressed in leukemias and a variety of solid tumor cell lines and is also detected in testis and heart. Isoform 2 is predominantly expressed in testis and weakly expressed in tumor cells.
genes like me logo Genes that share expression patterns with NUDCD1: view

Protein tissue co-expression partners for NUDCD1 Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues for NUDCD1 Gene

Orthologs for NUDCD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NUDCD1 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia NUDCD1 35
  • 92.11 (n)
  • 91.94 (a)
  • 92 (a)
(Canis familiaris)
Mammalia NUDCD1 35
  • 92.91 (n)
  • 93.83 (a)
  • 94 (a)
(Mus musculus)
Mammalia Nudcd1 35
  • 89.18 (n)
  • 90.33 (a)
Nudcd1 16
Nudcd1 36
  • 90 (a)
(Pan troglodytes)
Mammalia NUDCD1 35
  • 99.71 (n)
  • 99.66 (a)
  • 100 (a)
(Rattus norvegicus)
Mammalia Nudcd1 35
  • 89.02 (n)
  • 90.29 (a)
(Monodelphis domestica)
Mammalia NUDCD1 36
  • 83 (a)
(Ornithorhynchus anatinus)
Mammalia NUDCD1 36
  • 81 (a)
(Gallus gallus)
Aves NUDCD1 35
  • 75.19 (n)
  • 75.64 (a)
  • 64 (a)
(Anolis carolinensis)
Reptilia NUDCD1 36
  • 72 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia nudcd1 35
  • 68.92 (n)
  • 68.11 (a)
Str.15325 35
African clawed frog
(Xenopus laevis)
Amphibia cml66-prov 35
(Danio rerio)
Actinopterygii nudcd1 35
  • 61.27 (n)
  • 58.71 (a)
wufc11c02 35
nudcd1 36
  • 58 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000648 35
  • 42.62 (n)
  • 32.02 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG10347 35
  • 40.66 (n)
  • 27.84 (a)
CG10347 36
  • 24 (a)
(Caenorhabditis elegans)
Secernentea C44E4.5 35
  • 42.34 (n)
  • 27.41 (a)
C44E4.5 36
  • 27 (a)
Species with no ortholog for NUDCD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NUDCD1 Gene

Gene Tree for NUDCD1 (if available)
Gene Tree for NUDCD1 (if available)

Paralogs for NUDCD1 Gene

No data available for Paralogs for NUDCD1 Gene

Variants for NUDCD1 Gene

Sequence variations from dbSNP and Humsavar for NUDCD1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs2980619 - 109,289,818(+) AATGT(G/T)AAAGA reference, missense
rs2980618 - 109,289,769(+) TGATA(C/T)GTCTT reference, missense
rs34660136 - 109,271,124(+) TGGAT(G/T)TGGAT reference, missense
rs11550169 - 109,271,027(-) TGGCA(A/G/T)TACAT reference, missense
rs2054255 -- 109,261,631(+) AAGGC(A/G)TAAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NUDCD1 Gene

Variant ID Type Subtype PubMed ID
nsv891272 CNV Loss 21882294
dgv7843n71 CNV Loss 21882294
dgv7844n71 CNV Loss 21882294
dgv7845n71 CNV Loss 21882294
nsv515589 CNV Loss 19592680
nsv6346 CNV Insertion 18451855

Variation tolerance for NUDCD1 Gene

Residual Variation Intolerance Score: 61.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.85; 91.78% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for NUDCD1 Gene

Disorders for NUDCD1 Gene

Relevant External Links for NUDCD1

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NUDCD1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUDCD1 Gene

Publications for NUDCD1 Gene

  1. CML66, a broadly immunogenic tumor antigen, elicits a humoral immune response associated with remission of chronic myelogenous leukemia. (PMID: 11416219) Yang X.-F. … Ritz J. (Proc. Natl. Acad. Sci. U.S.A. 2001) 2 3 4 67
  2. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3
  3. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  4. A quantitative chaperone interaction network reveals the architecture of cellular protein homeostasis pathways. (PMID: 25036637) Taipale M. … Lindquist S. (Cell 2014) 3
  5. Quantitative study of the interactome of PKCIP involved in the EGF-induced tumor cell chemotaxis. (PMID: 23402259) Chen R. … Zhang N. (J. Proteome Res. 2013) 3

Products for NUDCD1 Gene

Sources for NUDCD1 Gene