NUDCD1 Gene
protein-coding GIFtS : 45
GCID: GC08 M110323
NudC domain containing 1
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Aliasesfor NUDCD1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases NudC Domain Containing 1 1 2 FLJ149911 CML661 2 3 5 OVA662 Chronic Myelogenous Leukemia Tumor Antigen 662 3 NudC Domain-Containing Protein 12 Tumor Antigen CML662 3
Export aliases for NUDCD1 gene to outside databases Previous GC identifer: GC08M105575
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Summariesfor NUDCD1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor NUDCD1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_008046.16 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NUDCD1 gene promoter: HOXA9B HOXA9 ISGF-3 Sp1 Nkx6-1 Other transcription factors Search SABiosciences Chromatin IP Primers for NUDCD1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NUDCD1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8q23 Ensembl cytogenetic band: 8q23.1 HGNC cytogenetic band: 8q23 NUDCD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M110323: view genomic region
(about GC identifiers )
Start:
110,253,148 bp from pter
End:
110,346,614 bp from pter
Size:
93,467 bases
Orientation:
minus strand
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Proteinsfor NUDCD1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NUDC1_HUMAN, Q96RS6 (See
protein sequence )Recommended Name: NudC domain-containing protein 1 Size : 583 amino acids; 66756 Da
Subcellular location : Isoform 1: Cytoplasm. Nucleus
Subcellular location : Isoform 2: Cytoplasm
Subcellular location : Isoform 3: Cytoplasm. Nucleus
Miscellaneous : Isoform 1 is the dominant immunogenic isoform and is capable of eliciting a humoral response inindividuals with a variety of solid tumors. Expression of isoform 1 in a wide variety of malignancies as well as the presence of an immunogenic epitope suggest that it may be a suitable target for antigen-specific immunotherapy
Secondary accessions : B4DVX6 Q4G130 Q8NDQ5 Q8NG18 Q96SI4 Q9BVR5Alternative splicing : 3 isoforms : Q96RS6-1 Q96RS6-2 Q96RS6-3 (May be produced at very low levels due to a premature stop codon in the mRNA, leading to nonsense-mediated mRNA decay)Explore the universe of human proteins at neXtProt for NUDCD1: NX_Q96RS6 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q96RS6 NUDCD1 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins (2 alternative transcripts):
NP_001121683.1 NP_116258.2 ENSEMBL proteins: ENSP00000239690 ENSP00000410707 ENSP00000430095 ENSP00000430859 Human Recombinant Protein Products for NUDCD1: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
NUDCD1 for ontologies About GeneDecksing NUDCD1 Antibody Products: Assay Products for NUDCD1:
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Protein
Domains / Familiesfor NUDCD1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NUDCD1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q96RS6 ProtoNet protein and cluster: Q96RS6
UniProtKB/Swiss-Prot: NUDC1_HUMAN, Q96RS6 Similarity : Contains 1 CS domain
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Functionfor NUDCD1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Animal Models: Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): NUDCD1 (NM_001128211 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NUDCD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NUDCD1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NUDCD1
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Pathways & Interactionsfor NUDCD1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NUDCD1 STRING Interaction
Network Preview (showing 2 interactants - click image to see more details)2 Interacting proteins for NUDCD1 (Q96RS6 3 ENSP00000239690 4 ) via UniProtKB, MINT, STRING , and/or I2D About this table
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Drugs & Compoundsfor NUDCD1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NUDCD1 Search CenterWatch for drugs/clinical trials and news about NUDCD1 / NUDC1
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Transcriptsfor NUDCD1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NUDCD1 gene (2 alternative transcripts): NM_001128211.1 NM_032869.3 Unigene Cluster for NUDCD1:
NudC domain containing 1 Hs.380291 [show with all ESTs ] Unigene Representative Sequence: NM_032869 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000239690 (uc003yna.3 uc003ynb.4 uc010mcl.3 ) ENST00000427660 (uc010mcm.1 )ENST00000519607 ENST00000521439 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 (see all 5 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 (see all 2 )OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 2 ): NUDCD1 (NM_001128211 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NUDCD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NUDCD1
Additional cDNA sequence: AF283301.1 AF283302.1 AF521133.1 AK027897.1 AK301278.1 AK307663.1 AK311583.1 AK315006.1 AL832317.1 BC000967.2 BC031258.1 BC043406.1
8 DOTS entries : DT.101972324 DT.451680
DT.95079998 DT.95171777 DT.100782694 DT.317452 DT.121470153 DT.100782695 24/153 AceView cDNA sequences (see all 153 ):
BM548201 CR603601 BM551230 AI867747 CB243935 BQ232743 CR613260 BM790249 BM828661 CA448077 BM787819 AI921332 AA352036 BM911883 AA766486 AI051750 AI057256 BM839990 N42671 AI075763 AA569843 AI587089 CA428565 CR618397 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for NUDCD1 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 SP1 :     -                       SP2 :     -     -                   SP3 :         -                  
ECgene alternative splicing isoforms for NUDCD1
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Expression for NUDCD1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NUDCD1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TTTTATATGAAbout this image See NUDCD1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NUDCD1 SOURCE GeneReport for Unigene cluster: Hs.380291
UniProtKB/Swiss-Prot: NUDC1_HUMAN, Q96RS6 Tissue specificity : Isoform 1 is specifically expressed in leukemias and a variety of solid tumor cell lines and isalso detected in testis and heart. Isoform 2 is predominantly expressed in testis and weakly expressed in tumor cells SABiosciences Custom PCR Arrays for NUDCD1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NUDCD1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NUDCD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NUDCD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NUDCD1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NUDCD1
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Orthologsfor NUDCD1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NUDCD1 gene from 7/21 species (see all 21 ) About this table
ENSEMBL Gene Tree for NUDCD1 (if available)TreeFam Gene Tree for NUDCD1 (if available)
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Paralogsfor NUDCD1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor NUDCD1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NUDCD1 (110253148 - 110346614 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 2 variations for NUDCD1 2 CNVs : 52345 36736
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NUDCD1
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Disorders
/ Diseasesfor NUDCD1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NUDCD1 for disorders About GeneDecksing
OMIM gene information: 606109
OMIM disorders : --1 disease for NUDCD1 : About MalaCards leukemia Export disorders for NUDCD1 gene to outside databases
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Publicationsfor NUDCD1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NUDCD1 gene, integrated from 9 sources (see all 15 ): (articles sorted by number of sources associating them with NUDCD1) Utopia : connect your pdf to the dynamic world of online information
CML66, a broadly immunogenic tumor antigen, elicits a humoral immune response associated with remission of chronic myelogenous leukemia. (PubMed id 11416219) 1 , 2 , 3 Yang X.-F.... Ritz J. (2001) A novel mechanism of alternative promoter and splicing regulates the epitope generation of tumor antigen CML66-L. (PubMed id 14688378) 1 , 2 Yan Y.... Yang X.-F. (2004) Systematic analysis of protein pools, isoforms, and modifications affecting turnover and subcellular localization. (PubMed id 22002106) 2 Ahmad Y.... Lamond A.I. (2012) A high-throughput approach for measuring temporal chan ges in the interactome. (PubMed id 22863883) 1 Kristensen A.R....Foster L.J. (2012) Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983) 1 Kim W....Gygi S.P. (2011) Initial characterization of the human central proteome. (PubMed id 21269460) 2 Burkard T.R.... Colinge J. (2011) Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048) 1 Danielsen J.M....Nielsen M.L. (2011) Defining the human deubiquitinating enzyme interactio n landscape. (PubMed id 19615732) 1 Sowa M.E....Harper J.W. (2009) Humoral immune responses against tumor-associated antigen OVA66 originally defined by serological analysis of recombinant cDNA expression libraries and its potentiality in cellular immunity. (PubMed id 18754882) 1 Jin S....Ge H.L. (2008) RNA interference targeting CML66, a novel tumor antigen, inhibits proliferation, invasion and metastasis of HeLa cells. (PubMed id 18534745) 1 Wang Q....Ge H. (2008)
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External Searches for NUDCD1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NUDCD1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NUDCD1 gene
(According to HUGE )
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Specialized Databases showing NUDCD1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for NUDCD1 gene: Search GeneIP for patents involving NUDCD1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NUDCD1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NUDCD1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NUDCD1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NUDCD1 OriGene Protein Over-expression Lysate for NUDCD1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NUDCD1 OriGene 3'-UTR Clone for NUDCD1 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NUDCD1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NUDCD1 OriGene Custom Protein Services for NUDCD1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NUDCD1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NUDCD1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NUDCD1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NUDCD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NUDCD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NUDCD1
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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NUDCD1
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Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NUDCD1
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