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Aliases for NUBPL Gene

Aliases for NUBPL Gene

  • Nucleotide Binding Protein Like 2 3 5
  • Iron-Sulfur Protein Required For NADH Dehydrogenase 2 3
  • IND1 Homolog 3 4
  • C14orf127 3 4
  • HuInd1 3 4
  • Chromosome 14 Open Reading Frame 127 2
  • Nucleotide Binding Protein-Like 2
  • Nucleotide-Binding Protein-Like 4
  • Iron-Sulfur Protein NUBPL 3
  • IND1 3

External Ids for NUBPL Gene

Previous HGNC Symbols for NUBPL Gene

  • C14orf127

Previous GeneCards Identifiers for NUBPL Gene

  • GC14P031101
  • GC14P032032
  • GC14P012147
  • GC14P031959

Summaries for NUBPL Gene

Entrez Gene Summary for NUBPL Gene

  • This gene encodes a member of the Mrp/NBP35 ATP-binding proteins family. The encoded protein is required for the assembly of the respiratory chain NADH dehydrogenase (complex I), an oligomeric enzymatic complex located in the inner mitochondrial membrane. Mutations in this gene cause mitochondrial complex I deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014]

GeneCards Summary for NUBPL Gene

NUBPL (Nucleotide Binding Protein Like) is a Protein Coding gene. Diseases associated with NUBPL include Mitochondrial Complex I Deficiency and Leigh Syndrome. Among its related pathways are Metabolism and Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins.. GO annotations related to this gene include 4 iron, 4 sulfur cluster binding. An important paralog of this gene is NUBP1.

UniProtKB/Swiss-Prot for NUBPL Gene

  • Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUBPL Gene

Genomics for NUBPL Gene

Regulatory Elements for NUBPL Gene

Enhancers for NUBPL Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH14F031892 1 Ensembl ENCODE 8.3 +404.4 404375 3.6 PKNOX1 ATF1 TAL1 GATA2 NCOR1 TRIM24 FOS SMARCE1 L3MBTL2 RNF2 NUBPL ENSG00000203546 PIR42868 ENSG00000257472
GH14F031828 0.8 Ensembl ENCODE 8.2 +339.4 339355 1.9 RFX1 POLR2A CEBPB ATF2 NUBPL ENSG00000203546 PIR42868 GC14M031687 RNU6-455P
GH14F031377 1.2 Ensembl ENCODE 4.8 -111.8 -111846 1.3 ATF1 MLX ARID4B DMAP1 SLC30A9 SP5 NFYC MXD4 MIER2 PPARG HEATR5A LOC101927124 HECTD1 RNU6-541P NUBPL ENSG00000203546 ATP5G1P2
GH14F031843 0.5 Ensembl 10 +353.4 353445 0.4 HLF CEBPB ZNF7 NUBPL PIR42868 GC14M031687 RNU6-455P
GH14F031901 0.8 ENCODE 6.1 +412.4 412374 1.5 LEF1 TBL1XR1 ZNF133 JUN PLRG1 ZNF644 FOSL1 NFE2 TRIM24 FOS NUBPL ENSG00000257472 PIR42868
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NUBPL on UCSC Golden Path with GeneCards custom track

Genomic Location for NUBPL Gene

Chromosome:
14
Start:
31,489,956 bp from pter
End:
31,861,224 bp from pter
Size:
371,269 bases
Orientation:
Plus strand

Genomic View for NUBPL Gene

Genes around NUBPL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUBPL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUBPL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUBPL Gene

Proteins for NUBPL Gene

  • Protein details for NUBPL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TB37-NUBPL_HUMAN
    Recommended name:
    Iron-sulfur protein NUBPL
    Protein Accession:
    Q8TB37
    Secondary Accessions:
    • B4DHZ1
    • Q86TZ4
    • Q9H9M2

    Protein attributes for NUBPL Gene

    Size:
    319 amino acids
    Molecular mass:
    34083 Da
    Cofactor:
    Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH24919.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14203.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD62349.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for NUBPL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUBPL Gene

Post-translational modifications for NUBPL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NUBPL Gene

Domains & Families for NUBPL Gene

Protein Domains for NUBPL Gene

Suggested Antigen Peptide Sequences for NUBPL Gene

Graphical View of Domain Structure for InterPro Entry

Q8TB37

UniProtKB/Swiss-Prot:

NUBPL_HUMAN :
  • Belongs to the Mrp/NBP35 ATP-binding proteins family.
Family:
  • Belongs to the Mrp/NBP35 ATP-binding proteins family.
genes like me logo Genes that share domains with NUBPL: view

Function for NUBPL Gene

Molecular function for NUBPL Gene

UniProtKB/Swiss-Prot Function:
Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

Gene Ontology (GO) - Molecular Function for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
GO:0046872 metal ion binding IEA --
GO:0051536 iron-sulfur cluster binding IEA --
GO:0051539 4 iron, 4 sulfur cluster binding IDA 19752196
genes like me logo Genes that share ontologies with NUBPL: view
genes like me logo Genes that share phenotypes with NUBPL: view

Human Phenotype Ontology for NUBPL Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for NUBPL Gene

MGI Knock Outs for NUBPL:

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for NUBPL Gene

Localization for NUBPL Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUBPL Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUBPL gene
Compartment Confidence
mitochondrion 5
plasma membrane 4
nucleus 1
cytosol 1

Gene Ontology (GO) - Cellular Components for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IEA,IDA 19752196
GO:0005759 mitochondrial matrix TAS --
genes like me logo Genes that share ontologies with NUBPL: view

Pathways & Interactions for NUBPL Gene

genes like me logo Genes that share pathways with NUBPL: view

Gene Ontology (GO) - Biological Process for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032981 mitochondrial respiratory chain complex I assembly TAS --
GO:0070584 mitochondrion morphogenesis IMP 19752196
genes like me logo Genes that share ontologies with NUBPL: view

No data available for SIGNOR curated interactions for NUBPL Gene

Drugs & Compounds for NUBPL Gene

(1) Drugs for NUBPL Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Iloperidone Approved Pharma Antagonist Dopamine (D2) and serotonin (5HT2) receptor antagonist 0
genes like me logo Genes that share compounds with NUBPL: view

Transcripts for NUBPL Gene

Unigene Clusters for NUBPL Gene

Nucleotide binding protein-like:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUBPL Gene

No ASD Table

Relevant External Links for NUBPL Gene

GeneLoc Exon Structure for
NUBPL
ECgene alternative splicing isoforms for
NUBPL

Expression for NUBPL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NUBPL Gene

Protein differential expression in normal tissues from HIPED for NUBPL Gene

This gene is overexpressed in Heart (14.8) and Salivary gland (12.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NUBPL Gene



Protein tissue co-expression partners for NUBPL Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NUBPL Gene:

NUBPL

SOURCE GeneReport for Unigene cluster for NUBPL Gene:

Hs.288981

mRNA Expression by UniProt/SwissProt for NUBPL Gene:

Q8TB37-NUBPL_HUMAN
Tissue specificity: Highest expression in liver and kidney. expressed at significant levels in small intestine and brain (at protein level).
genes like me logo Genes that share expression patterns with NUBPL: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NUBPL Gene

Orthologs for NUBPL Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NUBPL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUBPL 34 35
  • 99.48 (n)
dog
(Canis familiaris)
Mammalia NUBPL 34 35
  • 90.64 (n)
cow
(Bos Taurus)
Mammalia NUBPL 34 35
  • 90.07 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NUBPL 35
  • 87 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nubpl 34 16 35
  • 86.73 (n)
rat
(Rattus norvegicus)
Mammalia Nubpl 34
  • 86.42 (n)
oppossum
(Monodelphis domestica)
Mammalia NUBPL 35
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves NUBPL 34 35
  • 73.78 (n)
lizard
(Anolis carolinensis)
Reptilia NUBPL 35
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nubpl 34
  • 66.9 (n)
Str.16298 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.14274 34
zebrafish
(Danio rerio)
Actinopterygii nubpl 34 35
  • 69.88 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG3262 34 35
  • 52.72 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP008828 34
  • 51.9 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NBP35 35
  • 29 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons INDL 34
  • 59.1 (n)
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.12146 34
rice
(Oryza sativa)
Liliopsida Os03g0627300 34
  • 62.93 (n)
Os.27341 34
barley
(Hordeum vulgare)
Liliopsida Hv.4690 34
wheat
(Triticum aestivum)
Liliopsida Ta.9359 34
corn
(Zea mays)
Liliopsida Zm.13204 34
bread mold
(Neurospora crassa)
Ascomycetes NCU11285 34
  • 50.39 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.698 34
Species where no ortholog for NUBPL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • worm (Caenorhabditis elegans)

Evolution for NUBPL Gene

ENSEMBL:
Gene Tree for NUBPL (if available)
TreeFam:
Gene Tree for NUBPL (if available)

Paralogs for NUBPL Gene

Paralogs for NUBPL Gene

(2) SIMAP similar genes for NUBPL Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with NUBPL: view

Variants for NUBPL Gene

Sequence variations from dbSNP and Humsavar for NUBPL Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type
rs397515440 Mitochondrial complex I deficiency (MT-C1D) [MIM:252010], Pathogenic 31,599,310(+) TGCTA(G/T)ATGTG nc-transcript-variant, reference, missense, utr-variant-5-prime
VAR_069768 Mitochondrial complex I deficiency (MT-C1D) [MIM:252010]
rs118161496 Pathogenic 31,850,092(+) GGTTC(C/T)AATGG intron-variant
rs200401432 Pathogenic 31,562,125(+) CCCGA(A/G)GACTT nc-transcript-variant, upstream-variant-2KB, reference, missense, utr-variant-5-prime
rs201430951 Pathogenic 31,599,308(+) TTTGC(C/T)AGATG nc-transcript-variant, reference, synonymous-codon, missense, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for NUBPL Gene

Variant ID Type Subtype PubMed ID
nsv974321 CNV duplication 23825009
nsv85392 CNV deletion 16902084
nsv564183 CNV loss 21841781
nsv564182 CNV gain 21841781
nsv526200 CNV gain 19592680
nsv521541 CNV loss 19592680
nsv520783 CNV loss 19592680
nsv456199 CNV loss 19166990
nsv1150909 CNV duplication 26484159
nsv1046526 CNV gain 25217958
esv8132 CNV gain 19470904
esv3892496 CNV loss 25118596
esv3633977 CNV loss 21293372
esv3633975 CNV loss 21293372
esv3633974 CNV loss 21293372
esv3633973 CNV loss 21293372
esv3633971 CNV loss 21293372
esv3581101 CNV loss 25503493
esv3581100 CNV loss 25503493
esv3581099 CNV loss 25503493
esv3448539 CNV insertion 20981092
esv3306848 CNV mobile element insertion 20981092
esv2678410 CNV deletion 23128226
esv2672738 CNV deletion 23128226
esv2668030 CNV deletion 23128226
esv2663509 CNV deletion 23128226
esv2662062 CNV deletion 23128226
dgv3607n54 CNV gain 21841781
dgv130n21 CNV loss 19592680

Variation tolerance for NUBPL Gene

Residual Variation Intolerance Score: 90.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.45; 28.38% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NUBPL Gene

Human Gene Mutation Database (HGMD)
NUBPL
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUBPL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUBPL Gene

Disorders for NUBPL Gene

MalaCards: The human disease database

(2) MalaCards diseases for NUBPL Gene - From: OMIM, ClinVar, GeneTests, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
mitochondrial complex i deficiency
  • mitochondrial complex 1 deficiency
leigh syndrome
  • leigh syndrome due to mitochondrial complex i deficiency
- elite association - COSMIC cancer census association via MalaCards
Search NUBPL in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

NUBPL_HUMAN
  • Mitochondrial complex I deficiency (MT-C1D) [MIM:252010]: A disorder of the mitochondrial respiratory chain that causes a wide range of clinical manifestations from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease. {ECO:0000269 PubMed:20818383, ECO:0000269 PubMed:23553477}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Relevant External Links for NUBPL

Genetic Association Database (GAD)
NUBPL
Human Genome Epidemiology (HuGE) Navigator
NUBPL
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NUBPL
genes like me logo Genes that share disorders with NUBPL: view

No data available for Genatlas for NUBPL Gene

Publications for NUBPL Gene

  1. NUBPL mutations in patients with complex I deficiency and a distinct MRI pattern. (PMID: 23553477) Kevelam S.H. … van der Knaap M.S. (Neurology 2013) 3 4 64
  2. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  3. High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency. (PMID: 20818383) Calvo S.E. … Mootha V.K. (Nat. Genet. 2010) 3 4 64
  4. Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia. (PMID: 18521091) Volpi S. … Lavedan C. (Mol. Psychiatry 2009) 3 46 64
  5. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini S.E. … Oksenberg J.R. (Hum. Mol. Genet. 2009) 3 46 64

Products for NUBPL Gene

Sources for NUBPL Gene

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