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Aliases for NTRK3-AS1 Gene

Subcategory (RNA class) for NTRK3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NTRK3-AS1 Gene

  • NTRK3 Antisense RNA 1 2 3 5
  • NTRK3 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NTRK3-AS1 Gene

Previous GeneCards Identifiers for NTRK3-AS1 Gene

  • GC15P088797

Summaries for NTRK3-AS1 Gene

GeneCards Summary for NTRK3-AS1 Gene

NTRK3-AS1 (NTRK3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTRK3-AS1 Gene

Genomics for NTRK3-AS1 Gene

Regulatory Elements for NTRK3-AS1 Gene

Enhancers for NTRK3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F088258 0.2 ENCODE 14.3 +5.9 5865 0.9 CTCF POLR2A RAD21 NTRK3-AS1 NTRK3 LOC105370957
GH15F088144 0.4 ENCODE 7 -107.5 -107454 1.2 SCRT2 TRIM28 NTRK3-AS1 MED28P6
GH15F088246 1 Ensembl ENCODE 6.4 -5.7 -5681 0.9 CTCF PKNOX1 MAX SIN3A ZIC2 RAD21 E2F1 ZNF316 ZNF143 SMC3 MRPL46 MRPS11 ENSG00000173867 NTRK3-AS1 MED28P6
GH15F088238 0.8 ENCODE 6 -13.7 -13713 1.2 ATF3 CEBPB ZNF16 NTRK3-AS1 MED28P6
GH15F088255 0.3 FANTOM5 0.8 +2.5 2546 0.2 RNF2 CBX2 EZH2 NTRK3 NTRK3-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NTRK3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NTRK3-AS1 Gene

Chromosome:
15
Start:
88,252,730 bp from pter
End:
88,271,066 bp from pter
Size:
18,337 bases
Orientation:
Plus strand

Genomic View for NTRK3-AS1 Gene

Genes around NTRK3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTRK3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTRK3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTRK3-AS1 Gene

Proteins for NTRK3-AS1 Gene

Post-translational modifications for NTRK3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTRK3-AS1 Gene

Domains & Families for NTRK3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTRK3-AS1 Gene

Function for NTRK3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTRK3-AS1 Gene

Localization for NTRK3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NTRK3-AS1 Gene

Pathways & Interactions for NTRK3-AS1 Gene

SuperPathways for NTRK3-AS1 Gene

No Data Available

Interacting Proteins for NTRK3-AS1 Gene

Gene Ontology (GO) - Biological Process for NTRK3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NTRK3-AS1 Gene

Transcripts for NTRK3-AS1 Gene

mRNA/cDNA for NTRK3-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NTRK3-AS1 Gene

NTRK3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NTRK3-AS1 Gene

No ASD Table

Relevant External Links for NTRK3-AS1 Gene

GeneLoc Exon Structure for
NTRK3-AS1
ECgene alternative splicing isoforms for
NTRK3-AS1

Expression for NTRK3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NTRK3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NTRK3-AS1 Gene

This gene is overexpressed in Testis (x39.4).

SOURCE GeneReport for Unigene cluster for NTRK3-AS1 Gene:

Hs.578429
genes like me logo Genes that share expression patterns with NTRK3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NTRK3-AS1 Gene

Orthologs for NTRK3-AS1 Gene

Evolution for NTRK3-AS1 Gene

ENSEMBL:
Gene Tree for NTRK3-AS1 (if available)
TreeFam:
Gene Tree for NTRK3-AS1 (if available)

No data available for Orthologs for NTRK3-AS1 Gene

Paralogs for NTRK3-AS1 Gene

No data available for Paralogs for NTRK3-AS1 Gene

Variants for NTRK3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NTRK3-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1105693 -- 88,253,479(+) CCGGG(A/G)TAAGC intron-variant, upstream-variant-2KB, splice-donor-variant
rs1105694 -- 88,253,728(+) CCTCT(A/C)AGAAT intron-variant, upstream-variant-2KB
rs111418654 -- 88,258,905(+) AACAA(A/C)AAAAA intron-variant
rs111610759 -- 88,269,710(+) CGCAT(G/T)CCGGC nc-transcript-variant
rs111642653 -- 88,269,957(+) GAGCC(C/T)CACAG nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for NTRK3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1112675 CNV deletion 24896259
nsv827427 CNV gain 20364138
nsv952021 CNV deletion 24416366

Relevant External Links for NTRK3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTRK3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NTRK3-AS1 Gene

Disorders for NTRK3-AS1 Gene

Relevant External Links for NTRK3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NTRK3-AS1

No disorders were found for NTRK3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTRK3-AS1 Gene

Publications for NTRK3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NTRK3-AS1 Gene

Sources for NTRK3-AS1 Gene

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