NTMT1 Gene
protein-coding GIFtS: 45
GCID: GC09P132372
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N-terminal Xaa-Pro-Lys N-methyltransferase 1(Previous names: chromosome 9 open reading frame 32, methyltransferase like...)
(Previous symbols: C9orf32, METTL11A)
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Aliases
for NTMT1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| N-Terminal Xaa-Pro-Lys N-Methyltransferase 11 2 | | Methyltransferase-Like Protein 11A2 3 | | C9orf321 2 3 | | NRMT2 3 | | METTL11A1 2 3 | | NTM1A2 3 | | AD-0031 2 | | N-Terminal RCC1 Methyltransferase2 3 | | HOMT1A1 2 | | X-Pro-Lys N-Terminal Protein Methyltransferase 1A2 3 | | Methyltransferase Like 11A1 2 | | Chromosome 9 Open Reading Frame 321 | | Alpha N-Terminal Protein Methyltransferase 1A2 3 | | EC 2.1.1.2443 |
Export aliases for NTMT1 gene to outside databases |
Summaries
for NTMT1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for NTMT1:
The METTL11A gene encodes an N-terminal methyltransferase for the RAN (MIM 601179) guanine nucleotide exchange factorregulator of chromosome condensation 1 (RCC1; MIM 179710). METTL11A enzyme alpha-N-methylates other protein targetssuch as SET (MIM 600960) and RB (MIM 180200).(supplied by OMIM, Nov 2010)
UniProtKB/Swiss-Prot: NTM1A_HUMAN, Q9BV86Function: Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif[Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation ofexposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro inthe Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET.Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1
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Genomic Views
for NTMT1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000009.11 NC_018920.1 NT_008470.19
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for NTMT1
Other transcription factors
Search SABiosciences Chromatin IP Primers for NTMT1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NTMT1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 9q34.11 Ensembl cytogenetic band: 9q34.11 HGNC cytogenetic band: 9q34.2NTMT1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 9 GeneLoc Exon Structure GeneLoc location for GC09P132372: view genomic region
(about GC identifiers)
Start:
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132,371,163 bp from pter |
End:
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132,398,209 bp from pter |
Size:
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27,047 bases |
Orientation:
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plus strand |
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Proteins
for NTMT1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NTM1A_HUMAN, Q9BV86 (See
protein sequence)Recommended Name: N-terminal Xaa-Pro-Lys N-methyltransferase 1 Size: 223 amino acids; 25387 Da
Subcellular location: Nucleus. Note=Predominantly nuclear
1 PDB 3D structure from  and Proteopedia  for NTMT1:2EX4 (3D)
Secondary accessions: A8K4J2 A8K8G7 Q5SZB9 Q9UI28Alternative splicing: 2 isoforms: Q9BV86-1 Q9BV86-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for NTMT1: NX_Q9BV86
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9BV86
NTMT1 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_054783.2
ENSEMBL proteins: ENSP00000361564 ENSP00000361561 ENSP00000361559 ENSP00000361558
Human Recombinant Protein Products:
Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table
NTMT1 for ontologies About GeneDecksing
NTMT1 Antibody Products:
Assay Products for NTMT1: |
Protein
Domains /
Families
for NTMT1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NTMT1 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q9BV86ProtoNet protein and cluster: Q9BV86 1 Blocks protein family: IPB013216 Methyltransferase type 11
UniProtKB/Swiss-Prot: NTM1A_HUMAN, Q9BV86Similarity: Belongs to the methyltransferase superfamily. NTM1 family |
Function
for NTMT1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: NTM1A_HUMAN, Q9BV86Function: Alpha-N-methyltransferase that methylates the N-terminus of target proteins containing the N-terminal motif[Ala/Pro/Ser]-Pro-Lys when the initiator Met is cleaved. Specifically catalyzes mono-, di- or tri-methylation ofexposed alpha-amino group of Ala or Ser residue in the [Ala/Ser]-Pro-Lys motif and mono- or di-methylation of Pro inthe Pro-Pro-Lys motif. Responsible for the N-terminal methylation of KLHL31, MYL2, MYL3, RB1, RCC1, RPL23A and SET.Required during mitosis for normal bipolar spindle formation and chromosome segregation via its action on RCC1Catalytic activity: 3 S-adenosyl-L-methionine + N-terminal-(A,S)PK-[protein] = 3 S-adenosyl-L-homocysteine +N-terminal-N,N,N-trimethyl-N-(A,S)PK-[protein]Catalytic activity: 2 S-adenosyl-L-methionine + N-terminal-PPK-[protein] = 2 S-adenosyl-L-homocysteine +N-terminal-N,N-dimethyl-N-PPK-[protein]Enzyme Number (IUBMB): EC 2.1.1.2441
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NTMT1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NTMT1 |
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0008276 | protein methyltransferase activity |
IDA | -- |
NTMT1 for ontologies About GeneDecksing
|
Pathways & Interactions
for NTMT1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NTMT1
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/51 Interacting proteins for NTMT1 (Q9BV861, 3 ENSP000003615584) via UniProtKB, MINT, STRING, and/or I2D (see all 51)About this table
Gene Ontology (GO): 5/6 biological process terms (GO ID links to tree view) (see all 6): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0007051 | spindle organization |
IMP | -- | | GO:0007059 | chromosome segregation |
IMP | -- | | GO:0018012 | N-terminal peptidyl-alanine trimethylation |
IEA | -- | | GO:0018016 | N-terminal peptidyl-proline dimethylation |
IDA | -- | | GO:0035572 | N-terminal peptidyl-serine dimethylation |
IDA | -- |
NTMT1 for ontologies About GeneDecksing
|
Drugs & Compounds
for NTMT1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for NTMT1
Search CenterWatch for drugs/clinical trials and news about NTMT1 / NTM1A
|
Transcripts
for NTMT1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for NTMT1 gene: NM_014064.2 Unigene Cluster for NTMT1: N-terminal Xaa-Pro-Lys N-methyltransferase 1 Hs.744027 [show with all ESTs]Unigene Representative Sequence: AK2988408 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000372486 ENST00000372483(uc004byd.1 uc011mbs.1 uc010myw.1)
ENST00000481189 ENST00000459968 ENST00000482347 ENST00000372481 ENST00000372480
ENST00000486391
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NTMT1 (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NTMT1
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript Custom all cDNA clones Services for NTMT1 | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NTMT1 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NTMT1 |
Additional cDNA sequence: AF110776.1 AK290957.1 AK292332.1 AK298840.1 AK307056.1 AK313829.1 BC001396.2 BC033234.1 12 DOTS entries: DT.446030 DT.87012862 DT.95255586 DT.40132163 DT.75103880 DT.92453539 DT.100817843 DT.91889663 DT.95159200 DT.97859447 DT.101985432 DT.92453551 24/158 AceView cDNA sequences (see all 158): CA421004 BM915354 AA494415 BM712495 BM927413 AA084995 BI083998 BQ083423 AW157326 BG250974 BU186604 D12039 BM914694 BM554138 BC001396 AI147433 CF529599 BM887977 BM909502 BM781855 BQ012313 AJ572109 BG180464 BU542149
GeneLoc Exon Structure
5 Alternative Splicing Database (ASD) splice patterns (SP) for NTMT1 About this scheme
| ExUns: | 1a | · | 1b | · | 1c | ^ | 2 | ^ | 3a | · | 3b | · | 3c | ^ | 4a | · | 4b | · | 4c |
|---|
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| SP1: | | | | | - | | - | | | | | | - | | | | | | | | |
| SP2: | | | | | - | | - | | | | - | | - | | | | | | | | |
| SP3: | | | | | | | - | | | | | | - | | | | | | | | |
| SP4: | | | | | - | | - | | | | | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for NTMT1
|
Expression
for NTMT1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: --
See NTMT1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NTMT1
SOURCE GeneReport for Unigene cluster: Hs.744027
SABiosciences Custom PCR Arrays for NTMT1
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NTMT1
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat NTMT1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NTMT1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NTMT1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NTMT1 |
Orthologs
for NTMT1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for NTMT1 gene from 9/29 species (see all 29) About this table
ENSEMBL Gene Tree for NTMT1 (if available)
TreeFam Gene Tree for NTMT1 (if available) |
Paralogs
for NTMT1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for NTMT1 gene
- METTL11B2
1 SIMAP similar gene for NTMT1 using alignment to 1 protein entry: NTM1A_HUMAN:METTL11B
NTMT1 for paralogs About GeneDecksing
|
Genomic Variants
for NTMT1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 9 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for NTMT1 (132371163 - 132398209 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NTMT1: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NTMT1 |
|
Disorders
/ Diseases
for NTMT1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NTMT1 for disorders About GeneDecksing
OMIM gene information: 613560
OMIM disorders: --
3  diseases for NTMT1: About MalaCardshomocysteine retinoblastoma neuronitis
Export disorders for NTMT1 gene to outside databases
|
Publications
for NTMT1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for NTMT1 gene, integrated from 9 sources (see all 18):
(articles sorted by number of sources associating them with NTMT1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Identification of protein N-terminal methyltransferases in yeast and humans. (PubMed id 20481588)1, 2, 3 Webb K.J.... Clarke S.G. (2010)
- NRMT is an alpha-N-methyltransferase that methylates RCC1 and retinoblastoma protein. (PubMed id 20668449)1, 2 Tooley C.E.... Macara I.G. (2010)
- DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Gene expression profiling in the human hypothalamus-pituitary-adrenal axis and full-length cDNA cloning. (PubMed id 10931946)1, 2 Hu R.-M.... Chen J.-L. (2000)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Substrate specificity of mammalian N-terminal a-amino methyltransferase NRMT. (PubMed id 22769851)1 Petkowski J.J....Macara I.G. (2012)
- Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
- A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
- Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
|
External Searches for NTMT1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing NTMT1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing NTMT1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NTMT1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for NTMT1 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for NTMT1 gene:
Search GeneIP for patents involving NTMT1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for NTMT1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NTMT1 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NTMT1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NTMT1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NTMT1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NTMT1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NTMT1 |
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 | | | NTMT1 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NTMT1 |
|  |  |  | | | | Search ThermoFisher Antibodies for NTMT1 |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NTMT1 |
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