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Aliases for NTM-IT Gene

Subcategory (RNA class) for NTM-IT Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NTM-IT Gene

  • NTM Intronic Transcript 2 3 5
  • NTM Intronic Transcript 3 (Non-Protein Coding) 2 3
  • NTM Intronic Transcript (Non-Protein Coding) 2 3
  • NTM-IT3 3

External Ids for NTM-IT Gene

Previous HGNC Symbols for NTM-IT Gene

  • NTM-IT3

Previous GeneCards Identifiers for NTM-IT Gene

  • GC11P132156

Summaries for NTM-IT Gene

GeneCards Summary for NTM-IT Gene

NTM-IT (NTM Intronic Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NTM-IT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTM-IT Gene

Genomics for NTM-IT Gene

Regulatory Elements for NTM-IT Gene

Enhancers for NTM-IT Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11H132278 0.4 ENCODE 0.4 -5.4 -5441 0.2 ZZZ3 NTM-IT GC11M132240
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NTM-IT on UCSC Golden Path with GeneCards custom track

Genomic Locations for NTM-IT Gene

Genomic Locations for NTM-IT Gene
4,158 bases
Plus strand

Genomic View for NTM-IT Gene

Genes around NTM-IT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTM-IT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-IT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-IT Gene

Proteins for NTM-IT Gene

Post-translational modifications for NTM-IT Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-IT Gene

Domains & Families for NTM-IT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTM-IT Gene

Function for NTM-IT Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-IT Gene

Localization for NTM-IT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-IT Gene

Pathways & Interactions for NTM-IT Gene

SuperPathways for NTM-IT Gene

No Data Available

Interacting Proteins for NTM-IT Gene

Gene Ontology (GO) - Biological Process for NTM-IT Gene


No data available for Pathways by source and SIGNOR curated interactions for NTM-IT Gene

Drugs & Compounds for NTM-IT Gene

No Compound Related Data Available

Transcripts for NTM-IT Gene

mRNA/cDNA for NTM-IT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-IT Gene

No ASD Table

Relevant External Links for NTM-IT Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NTM-IT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NTM-IT Gene

genes like me logo Genes that share expression patterns with NTM-IT: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-IT Gene

Orthologs for NTM-IT Gene

Evolution for NTM-IT Gene

Gene Tree for NTM-IT (if available)
Gene Tree for NTM-IT (if available)

No data available for Orthologs for NTM-IT Gene

Paralogs for NTM-IT Gene

No data available for Paralogs for NTM-IT Gene

Variants for NTM-IT Gene

Sequence variations from dbSNP and Humsavar for NTM-IT Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000612324 -- 132,284,790(+) GGGCC(A/G)GCCAG intron-variant, nc-transcript-variant
rs1000983734 -- 132,282,697(+) AAAGA(A/G)GAAGA intron-variant, upstream-variant-2KB
rs1001639275 -- 132,285,071(+) GTGAC(A/G)CTGCC intron-variant, nc-transcript-variant
rs1001784462 -- 132,284,412(+) TCCTG(A/G)TCTCT intron-variant
rs1002535442 -- 132,282,376(+) GTAAC(C/T)TGAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NTM-IT Gene

Variant ID Type Subtype PubMed ID
esv3892111 CNV loss 25118596
esv3628121 CNV gain 21293372

Relevant External Links for NTM-IT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NTM-IT Gene

Disorders for NTM-IT Gene

Relevant External Links for NTM-IT

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NTM-IT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-IT Gene

Publications for NTM-IT Gene

No publications were found for NTM-IT Gene.

Products for NTM-IT Gene

Sources for NTM-IT Gene

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