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Aliases for NTM-AS1 Gene

Subcategory (RNA class) for NTM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NTM-AS1 Gene

  • NTM Antisense RNA 1 2 3 4 5
  • C11orf39 3 4
  • Chromosome 11 Open Reading Frame 39 2
  • NTM Antisense Gene Protein 1 4

External Ids for NTM-AS1 Gene

Previous HGNC Symbols for NTM-AS1 Gene

  • C11orf39

Summaries for NTM-AS1 Gene

GeneCards Summary for NTM-AS1 Gene

NTM-AS1 (NTM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTM-AS1 Gene

Genomics for NTM-AS1 Gene

Regulatory Elements for NTM-AS1 Gene

Enhancers for NTM-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F131640 0.2 ENCODE 11.6 +23.2 23183 0.8 NTM-AS1 NTM GC11P131634 GC11P131635
GH11F131687 0.5 Ensembl 11.2 -24.7 -24721 1.1 CTCF GABPB1 ZNF143 SMC3 RAD21 ZBTB26 NTM-AS1 NTM GC11M131698 GC11P131669
GH11F131665 0.2 ENCODE 0.8 -3.0 -3034 1.4 SNX19 GC11M131664 NTM-AS1
GH11F131655 0.2 ENCODE 0.4 +6.8 6837 1.5 REST NTM-AS1 GC11P131634 GC11P131635
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NTM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NTM-AS1 Gene

131,662,129 bp from pter
131,663,583 bp from pter
1,455 bases
Minus strand

Genomic View for NTM-AS1 Gene

Genes around NTM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-AS1 Gene

Proteins for NTM-AS1 Gene

  • Protein details for NTM-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Putative uncharacterized protein NTM-AS1
    Protein Accession:

    Protein attributes for NTM-AS1 Gene

    140 amino acids
    Molecular mass:
    15188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NTM-AS1 Gene

Post-translational modifications for NTM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-AS1 Gene

Domains & Families for NTM-AS1 Gene

Protein Domains for NTM-AS1 Gene


Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NTM-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTM-AS1 Gene

Function for NTM-AS1 Gene

Phenotypes for NTM-AS1 Gene

GenomeRNAi human phenotypes for NTM-AS1:
genes like me logo Genes that share phenotypes with NTM-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-AS1 Gene

Localization for NTM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NTM-AS1 Gene

Pathways & Interactions for NTM-AS1 Gene

SuperPathways for NTM-AS1 Gene

No Data Available

Interacting Proteins for NTM-AS1 Gene

Gene Ontology (GO) - Biological Process for NTM-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NTM-AS1 Gene

Transcripts for NTM-AS1 Gene

mRNA/cDNA for NTM-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-AS1 Gene

No ASD Table

Relevant External Links for NTM-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NTM-AS1 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NTM-AS1 Gene

Orthologs for NTM-AS1 Gene

Evolution for NTM-AS1 Gene

Gene Tree for NTM-AS1 (if available)
Gene Tree for NTM-AS1 (if available)

No data available for Orthologs for NTM-AS1 Gene

Paralogs for NTM-AS1 Gene

No data available for Paralogs for NTM-AS1 Gene

Variants for NTM-AS1 Gene

Sequence variations from dbSNP and Humsavar for NTM-AS1 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1086216 -- 131,665,529(-) CAATC(A/G)CTTTC intron-variant, upstream-variant-2KB
rs111356281 -- 131,665,488(+) ATATG(A/G)CTAGG intron-variant, upstream-variant-2KB
rs111379421 -- 131,661,847(+) TTTGC(A/G)AGAGA intron-variant, downstream-variant-500B
rs111434582 -- 131,663,226(+) CAGAT(C/T)TGGCC intron-variant, nc-transcript-variant
rs111631589 -- 131,663,382(+) ACCAT(C/T)TCCCT intron-variant, nc-transcript-variant

Relevant External Links for NTM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NTM-AS1 Gene

Disorders for NTM-AS1 Gene

Relevant External Links for NTM-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NTM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-AS1 Gene

Publications for NTM-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  2. The sequence of the human genome. (PMID: 11181995) Venter J.C. … Zhu X. (Science 2001) 3 64

Products for NTM-AS1 Gene

Sources for NTM-AS1 Gene

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