Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NTM-AS1 Gene

Subcategory (RNA class) for NTM-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NTM-AS1 Gene

  • NTM Antisense RNA 1 2 3 4 5
  • C11orf39 3 4
  • Chromosome 11 Open Reading Frame 39 2
  • NTM Antisense Gene Protein 1 4

External Ids for NTM-AS1 Gene

Previous HGNC Symbols for NTM-AS1 Gene

  • C11orf39

Summaries for NTM-AS1 Gene

GeneCards Summary for NTM-AS1 Gene

NTM-AS1 (NTM Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NTM-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTM-AS1 Gene

Genomics for NTM-AS1 Gene

GeneHancer (GH) Regulatory Elements for NTM-AS1 Gene

Promoters and enhancers for NTM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I131687 Enhancer 0.5 Ensembl 11.2 -24.7 -24720 1.1 CTCF RB1 ZNF143 ZBTB26 RAD21 NTM-AS1 NTM GC11M131698 GC11P131669
GH11I131640 Enhancer 0.2 ENCODE 11.7 +23.2 23182 0.8 NTM-AS1 NTM GC11P131634 GC11P131635
GH11I131621 Enhancer 0.2 dbSUPER 11.5 +39.7 39722 4.5 NTM-AS1 NTM GC11P131620 GC11P131634 GC11P131635
GH11I131665 Enhancer 0.4 ENCODE dbSUPER 0.8 -3.0 -3034 1.4 GC11M131664 SNX19 NTM-AS1 NTM
GH11I131655 Enhancer 0.5 ENCODE dbSUPER 0.4 +6.8 6837 1.5 REST NTM-AS1 GC11P131634 GC11P131635 NTM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NTM-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NTM-AS1 Gene

Genomic Locations for NTM-AS1 Gene
chr11:131,662,129-131,663,583
(GRCh38/hg38)
Size:
1,455 bases
Orientation:
Minus strand
chr11:131,529,986-131,530,559
(GRCh37/hg19)

Genomic View for NTM-AS1 Gene

Genes around NTM-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-AS1 Gene

Proteins for NTM-AS1 Gene

  • Protein details for NTM-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZSK4-NTAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein NTM-AS1
    Protein Accession:
    Q6ZSK4

    Protein attributes for NTM-AS1 Gene

    Size:
    140 amino acids
    Molecular mass:
    15188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NTM-AS1 Gene

Post-translational modifications for NTM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-AS1 Gene

Domains & Families for NTM-AS1 Gene

Protein Domains for NTM-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NTM-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTM-AS1 Gene

Function for NTM-AS1 Gene

Phenotypes for NTM-AS1 Gene

GenomeRNAi human phenotypes for NTM-AS1:
genes like me logo Genes that share phenotypes with NTM-AS1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-AS1 Gene

Localization for NTM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-AS1 Gene

Pathways & Interactions for NTM-AS1 Gene

SuperPathways for NTM-AS1 Gene

No Data Available

Interacting Proteins for NTM-AS1 Gene

Gene Ontology (GO) - Biological Process for NTM-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NTM-AS1 Gene

Drugs & Compounds for NTM-AS1 Gene

No Compound Related Data Available

Transcripts for NTM-AS1 Gene

mRNA/cDNA for NTM-AS1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-AS1 Gene

No ASD Table

Relevant External Links for NTM-AS1 Gene

GeneLoc Exon Structure for
NTM-AS1
ECgene alternative splicing isoforms for
NTM-AS1

Expression for NTM-AS1 Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-AS1 Gene

Orthologs for NTM-AS1 Gene

Evolution for NTM-AS1 Gene

ENSEMBL:
Gene Tree for NTM-AS1 (if available)
TreeFam:
Gene Tree for NTM-AS1 (if available)

No data available for Orthologs for NTM-AS1 Gene

Paralogs for NTM-AS1 Gene

No data available for Paralogs for NTM-AS1 Gene

Variants for NTM-AS1 Gene

Sequence variations from dbSNP and Humsavar for NTM-AS1 Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000470084 -- 131,662,533(-) A/G intron_variant
rs1002058591 -- 131,663,542(-) C/A non_coding_transcript_variant
rs1003326869 -- 131,664,716(-) G/A upstream_transcript_variant
rs1003568243 -- 131,664,549(-) C/T upstream_transcript_variant
rs1003808681 -- 131,664,723(-) G/A upstream_transcript_variant

Additional Variant Information for NTM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTM-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NTM-AS1 Gene

Disorders for NTM-AS1 Gene

No disorders were found for NTM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-AS1 Gene

Publications for NTM-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3 58

Products for NTM-AS1 Gene

Sources for NTM-AS1 Gene

Content
Loading form....