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Aliases for NT5DC2 Gene

Aliases for NT5DC2 Gene

  • 5'-Nucleotidase Domain Containing 2 2
  • 5-Nucleotidase Domain Containing 2 2 3
  • EC 3.1.3.- 4

External Ids for NT5DC2 Gene

Summaries for NT5DC2 Gene

GeneCards Summary for NT5DC2 Gene

NT5DC2 (5'-Nucleotidase Domain Containing 2) is a Protein Coding gene. GO annotations related to this gene include hydrolase activity. An important paralog of this gene is NT5DC1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NT5DC2 Gene

Genomics for NT5DC2 Gene

Genomic Location for NT5DC2 Gene

Start:
52,524,369 bp from pter
End:
52,535,077 bp from pter
Size:
10,709 bases
Orientation:
Minus strand

Genomic View for NT5DC2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NT5DC2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NT5DC2 Gene

Regulatory Elements for NT5DC2 Gene

Proteins for NT5DC2 Gene

  • Protein details for NT5DC2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H857-NT5D2_HUMAN
    Recommended name:
    5-nucleotidase domain-containing protein 2
    Protein Accession:
    Q9H857
    Secondary Accessions:
    • C9JTZ6
    • E9PAL9
    • O95888
    • Q96C80
    • Q9H9Z8

    Protein attributes for NT5DC2 Gene

    Size:
    520 amino acids
    Molecular mass:
    60719 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH14550.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14064.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for NT5DC2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NT5DC2 Gene

Proteomics data for NT5DC2 Gene at MOPED

Post-translational modifications for NT5DC2 Gene

  • Modification sites at PhosphoSitePlus
  • Ubiquitination at Lys102

No data available for DME Specific Peptides for NT5DC2 Gene

Domains for NT5DC2 Gene

Protein Domains for NT5DC2 Gene

UniProtKB/Swiss-Prot:

NT5D2_HUMAN
Family:
  • Belongs to the 5(3)-deoxyribonucleotidase family.:
    • Q9H857
genes like me logo Genes that share domains with NT5DC2: view

No data available for Gene Families for NT5DC2 Gene

Function for NT5DC2 Gene

Enzyme Numbers (IUBMB) for NT5DC2 Gene

Gene Ontology (GO) - Molecular Function for NT5DC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008253 5-nucleotidase activity IBA --
GO:0016787 hydrolase activity --
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with NT5DC2: view

Phenotypes for NT5DC2 Gene

genes like me logo Genes that share phenotypes with NT5DC2: view

No data available for Molecular function , Animal Models , Transcription Factor Targeting and HOMER Transcription for NT5DC2 Gene

Localization for NT5DC2 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NT5DC2 Gene COMPARTMENTS Subcellular localization image for NT5DC2 gene
Compartment Confidence
mitochondrion 2
cytosol 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for NT5DC2 Gene

Pathways for NT5DC2 Gene

SuperPathways for NT5DC2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NT5DC2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008152 metabolic process --
GO:0016311 dephosphorylation IBA --
genes like me logo Genes that share ontologies with NT5DC2: view

No data available for Pathways by source for NT5DC2 Gene

Transcripts for NT5DC2 Gene

Unigene Clusters for NT5DC2 Gene

5-nucleotidase domain containing 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NT5DC2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9a · 9b ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13a · 13b · 13c ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^
SP1: -
SP2: - -
SP3: -
SP4: - -
SP5: -
SP6:
SP7: -
SP8: -
SP9: - - - -
SP10: - - - - -
SP11: -
SP12:
SP13:
SP14:
SP15: -

ExUns: 19a · 19b
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:

Relevant External Links for NT5DC2 Gene

GeneLoc Exon Structure for
NT5DC2
ECgene alternative splicing isoforms for
NT5DC2

Expression for NT5DC2 Gene

mRNA expression in normal human tissues for NT5DC2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NT5DC2 Gene

SOURCE GeneReport for Unigene cluster for NT5DC2 Gene Hs.84753

genes like me logo Genes that share expressions with NT5DC2: view

Orthologs for NT5DC2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NT5DC2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NT5DC2 36
  • 98.83 (n)
  • 98.55 (a)
NT5DC2 37
  • 92 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NT5DC2 36
  • 91.74 (n)
  • 95.78 (a)
NT5DC2 37
  • 96 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NT5DC2 36
  • 90.82 (n)
  • 96.75 (a)
NT5DC2 37
  • 93 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nt5dc2 36
  • 90.09 (n)
  • 97.95 (a)
Nt5dc2 16
Nt5dc2 37
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NT5DC2 37
  • 74 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NT5DC2 37
  • 79 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nt5dc2 36
  • 90.02 (n)
  • 97.04 (a)
chicken
(Gallus gallus)
Aves NT5DC2 36
  • 74.74 (n)
  • 79.11 (a)
NT5DC2 37
  • 76 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NT5DC2 37
  • 73 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia MGC53840 36
tropical clawed frog
(Silurana tropicalis)
Amphibia nt5dc2 36
  • 69.9 (n)
  • 73.59 (a)
Str.295 36
zebrafish
(Danio rerio)
Actinopterygii nt5dc2 36
  • 69.95 (n)
  • 72.24 (a)
nt5dc2 37
  • 62 (a)
OneToOne
wufb83e03 36
fruit fly
(Drosophila melanogaster)
Insecta CG1814 37
  • 40 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G23890 36
  • 47.59 (n)
  • 40.42 (a)
rice
(Oryza sativa)
Liliopsida Os09g0424600 36
  • 48.4 (n)
  • 40.28 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 37
  • 42 (a)
OneToMany
Species with no ortholog for NT5DC2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NT5DC2 Gene

ENSEMBL:
Gene Tree for NT5DC2 (if available)
TreeFam:
Gene Tree for NT5DC2 (if available)

Paralogs for NT5DC2 Gene

Paralogs for NT5DC2 Gene

Selected SIMAP similar genes for NT5DC2 Gene using alignment to 5 proteins:

Pseudogenes.org Pseudogenes for NT5DC2 Gene

genes like me logo Genes that share paralogs with NT5DC2: view

Variants for NT5DC2 Gene

Sequence variations from dbSNP and Humsavar for NT5DC2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs4282054 -- 52,532,049(+) CCAGG(C/T)GGGTG intron-variant
rs4475032 -- 52,526,005(+) GGCCC(C/T)AGACC intron-variant
rs4687624 -- 52,529,556(+) CTCCT(C/T)CTCAT intron-variant
rs4687625 -- 52,529,702(+) CTCAC(C/T)GCCTA intron-variant
rs6778735 -- 52,531,084(+) AGACA(C/T)CTCGC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NT5DC2 Gene

Variant ID Type Subtype PubMed ID
nsv876789 CNV Loss 21882294
nsv834697 CNV Loss 17160897
dgv5137n71 CNV Loss 21882294
nsv3820 CNV Insertion 18451855
dgv5138n71 CNV Loss 21882294
esv27812 CNV Loss 19812545

Relevant External Links for NT5DC2 Gene

HapMap Linkage Disequilibrium report
NT5DC2

Disorders for NT5DC2 Gene

No disorders were found for NT5DC2 Gene.

No data available for UniProtKB/Swiss-Prot for NT5DC2 Gene

Publications for NT5DC2 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. A "double adaptor" method for improved shotgun library construction. (PMID: 8619474) Andersson B. … Gibbs R.A. (Anal. Biochem. 1996) 2 3
  4. Large-scale concatenation cDNA sequencing. (PMID: 9110174) Yu W. … Gibbs R.A. (Genome Res. 1997) 2 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for NT5DC2 Gene

Sources for NT5DC2 Gene

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