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NSG1 Gene

protein-coding   GIFtS: 42
GCID: GC04P004350

Neuron Specific Gene Family Member 1


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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
D4S2342 3 5     P212
Brain Neuron Cytoplasmic Protein 12 3     Carboxyterminally EE-Tagged Neuron-Enriched Endosomal 21 KDa Protein2
D4S234E2 5     Neuron Specific Gene Family Member 12
NEEP212     Neuron-Specific Protein Family Member 12

External Ids:    Entrez Gene: 270652   Ensembl: ENSG000001688247   OMIM: 6076455   UniProtKB: P428573   

Export aliases for NSG1 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NSG1 Gene:
NSG1 is a protein-coding gene. GO annotations related to this gene include clathrin light chain binding. An important paralog of this gene is HMP19.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.11  NC_018915.2  NT_006051.19  
Regulatory elements:
   Search for regulatory transcription factor binding sites for NSG1
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNSG1 promoter sequence
   Search Chromatin IP Primers for NSG1

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NSG1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.3   Ensembl cytogenetic band:  4p16.3   

NSG1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NSG1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P004350:  view genomic region     (about GC identifiers)

Start:
4,349,867 bp from pter      End:
4,420,785 bp from pter
Size:
70,919 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: NSG1_HUMAN, P42857 (See protein sequence)
Recommended Name: Neuron-specific protein family member 1  
Size: 185 amino acids; 20913 Da
Secondary accessions: Q49AQ1

Explore the universe of human proteins at neXtProt for NSG1: NX_P42857

Explore proteomics data for NSG1 at MOPED

Post-translational modifications: 

  • Glycosylation2 at Thr145
  • Modification sites at PhosphoSitePlus

  • See NSG1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (4 alternative transcripts): 
    NP_001035190.1  NP_001274692.1  NP_001274693.1  NP_055207.1  

    ENSEMBL proteins: 
     ENSP00000388823   ENSP00000426358   ENSP00000421841   ENSP00000425423   ENSP00000408833  
     ENSP00000425345   ENSP00000425803   ENSP00000381049  

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    antibodies-online proteins for NSG1 (7 products) 

     
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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    1 InterPro protein domain:
     IPR009431 Calcyon_neuron-sp

    Graphical View of Domain Structure for InterPro Entry P42857

    ProtoNet protein and cluster: P42857

    1 Blocks protein domain: IPB009431 D1 dopamine receptor-interacting

    UniProtKB/Swiss-Prot: NSG1_HUMAN, P42857
    Similarity: Belongs to the NSG family


    Find genes that share domains with NSG1           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 1 molecular function term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0032051clathrin light chain binding IEA--
         
    Find genes that share ontologies with NSG1           About GenesLikeMe


    Phenotypes:
         1 GenomeRNAi human phenotype for NSG1:
     Increased Salmonella enterica  

    Animal Models:
       genOway: Develop your customized and physiologically relevant rodent model for NSG1

    miRNA
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    miRTarBase miRNAs that target NSG1:
    hsa-mir-193b-3p (MIRT016351)

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    Predesigned siRNA for gene silencing in human, mouse, rat NSG1

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    NSG1_HUMAN, P42857: Golgi apparatus membrane; Single-pass type II membrane protein (Potential)

    Gene Ontology (GO): 4 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000139Golgi membrane IEA--
    GO:0005634nucleus TAS9013775
    GO:0005737cytoplasm TAS9013775
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with NSG1           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NSG1
    Interactions:

        Search GeneGlobe Interaction Network for NSG1

    STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

    2 Interacting proteins for NSG1 (P428573 ENSP000003810494) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    STX12Q86Y823, ENSP000003630544I2D: score=2 STRING: ENSP00000363054
    GRIP1Q9Y3R03I2D: score=1 
    About this table

    Gene Ontology (GO): 2 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007212dopamine receptor signaling pathway IEA--
    GO:0048268clathrin coat assembly IEA--

    Find genes that share ontologies with NSG1           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for NSG1



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for NSG1 gene (4 alternative transcripts): 
    NM_001040101.1  NM_001287763.1  NM_001287764.1  NM_014392.4  

    Unigene Cluster for NSG1:

    Neuron specific gene family member 1
    Hs.518595  [show with all ESTs]
    Unigene Representative Sequence: BC034227
    10 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000421177(uc011bvz.2 uc011bwa.1 uc003ghz.3) ENST00000513555(uc003gia.3)
    ENST00000450293 ENST00000504347 ENST00000505246 ENST00000506380 ENST00000433139
    ENST00000513829 ENST00000504171 ENST00000397958
    miRNA
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    Additional mRNA sequence: 

    AK094573.1 AK125172.1 AK299657.1 AK301911.1 AK312288.1 BC034227.1 

    18 DOTS entries:

    DT.100833829  DT.313727  DT.97841936  DT.95282827  DT.100833826  DT.100706055  DT.100833819  DT.95369500 
    DT.100759509  DT.121258236  DT.121258246  DT.100833813  DT.101984578  DT.121258215  DT.121258264  DT.121258311 
    DT.121258381  DT.97787107 

    1 AceView cDNA sequence:

    AK096645 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for NSG1 (see all 9)    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b · 4c · 4d ^ 5a · 5b ^ 6 ^ 7a · 7b ^ 8 ^ 9a · 9b · 9c ^ 10a · 10b · 10c · 10d · 10e · 10f · 10g
    SP1:        -           -     -     -     -     -     -                 -                 -                                                               
    SP2:                    -     -     -     -     -                       -                 -                                                               
    SP3:                                -     -     -                       -                 -                                                               
    SP4:                                -     -     -     -                 -                 -                                                               
    SP5:                                                                    -                 -                                                               



    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    NSG1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: --
    NSG1 Expression
    About this image


    NSG1 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 4) fully expand
     
     Brain (Nervous System)    fully expand to see all 9 entries
             Thalamus
     
     Peripheral Nervous System (Nervous System)    fully expand to see all 2 entries
             Pro-myelinating Schwann Cells Peripheral Nerve Domain
     
     Ovary (Reproductive System)
             Pre-Granulosa Cells Primordial Follicle
     
     Blood (Hematopoietic System)
             T-Cytotoxic Cells Peripheral Blood
    NSG1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    NSG1 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.518595
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    In Situ
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for NSG1 gene from Selected species (see all 13)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nsg11 , 5 neuron specific gene family member 11, 5 93.15(n)1
    98.38(a)1
      5 (20.21 cM)5
    181961  NM_010942.31  NP_035072.21 
     381371935 
    chicken
    (Gallus gallus)
    Aves NSG11 neuron specific gene family member 1 81.44(n)
    88.65(a)
      395251  NM_204565.1  NP_989896.1 
    lizard
    (Anolis carolinensis)
    Reptilia --
    Uncharacterized protein
    86(a)
    1 ↔ 1
    GL343236.1(699312-733480)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.181462 Xenopus laevis transcribed sequence with moderate similarity more 74.74(n)    CF547856.1 
    zebrafish
    (Danio rerio)
    Actinopterygii caly6
    calcyon neuron-specific vesicular protein
    48(a)
    many ↔ many
    1(49773285-49802847) ENSDARG00000036008


    ENSEMBL Gene Tree for NSG1 (if available)
    TreeFam Gene Tree for NSG1 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for NSG1 gene
    HMP192  CALY2  
    4 SIMAP similar genes for NSG1 using alignment to 2 protein entries:     NSG1_HUMAN (see all proteins):
    D4S234E    HMP19    NSG2    CALY

    Find genes that share paralogs with NSG1           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for NSG1 (see all 884)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1821921361,2
    --4386028(+) TCTGCC/TACCCT 2 -- us2k10--------
    rs1430006531,2
    C--4386037(+) CTCTG-/TGAA  
            
    TGACT
    2 -- us2k10--------
    rs1165471801,2
    F--4386088(+) GCCTGT/CAGTGA 2 -- us2k11Minor allele frequency- C:0.01WA 118
    rs44980881,2
    C,F--4386137(+) ACCCCA/GGGAAC 2 -- us2k112Minor allele frequency- G:0.36NA WA CSA EA 374
    rs1876283961,2
    --4386195(+) AAGATA/GGGATT 2 -- us2k10--------
    rs1162194441,2
    C,F--4386287(+) GACACA/GGAGAA 2 -- us2k11Minor allele frequency- G:0.04WA 118
    rs1510489521,2
    --4386447(+) ACCTAC/GACTTT 2 -- us2k10--------
    rs771682141,2
    C,F--4386462(+) TTCTGG/CCCTCC 2 -- us2k11Minor allele frequency- C:0.05WA 118
    rs1409304561,2
    --4386483(+) GAGAAC/TATGTT 2 -- us2k10--------
    rs1907059831,2
    --4386550(+) TAACAC/GATTCT 2 -- us2k10--------

    HapMap Linkage Disequilibrium report for NSG1 (4349867 - 4420785 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for NSG1: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing NSG1
    DNA2.0 Custom Variant and Variant Library Synthesis for NSG1

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    OMIM gene information: 607645    OMIM disorders: --


    Find genes that share disorders with NSG1           About GenesLikeMe


    Export disorders for NSG1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for NSG1 gene, integrated from 10 sources (see all 19):
    (articles sorted by number of sources associating them with NSG1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    2. Variable subcellular localization of a neuron-specific protein during NTera 2 differentiation into post-mitotic human neurons. (PubMed id 9013775)1, 2 Carlock L....Dunbar J.C. (Brain Res. Mol. Brain Res. 1996)
    3. The protein interaction landscape of the human CMGC kinase group. (PubMed id 23602568)1 Varjosalo M....Gstaiger M. (Cell Rep 2013)
    4. Identification of NEEP21, encoding neuron-enriched endosomal protein of 21 kDa, as a transcriptional target of tumor suppressor p53. (PubMed id 20878061)1 Ohnishi S....Arakawa H. (Int. J. Oncol. 2010)
    5. Identification of NEEP21 as a A9-amyloid precursor protein-interacting protein in vivo that modulates amyloidogenic processing in vitro. (PubMed id 21084623)1 Norstrom E.M....Sisodia S.S. (J. Neurosci. 2010)
    6. D4S234E, a novel p53-responsive gene, induces apoptosis in response to DNA damage. (PubMed id 20599942)1 Kudoh T....Yoshida K. (Exp. Cell Res. 2010)
    7. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    8. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
    10. Modulation of receptor cycling by neuron-enriched endosomal protein of 21 kD. (PubMed id 12070131)1 Steiner P....Hirling H. (J. Cell Biol. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 27065 AceView: D4S234E.1 Ensembl:ENSG00000168824 euGenes: HUgn27065

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for NSG1 gene:
    Search GeneIP for patents involving NSG1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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