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Aliases for NSFP1 Gene

Aliases for NSFP1 Gene

  • N-Ethylmaleimide-Sensitive Factor Pseudogene 1 2 3 5
  • N-Ethylmaleimide-Sensitive Factor Pseudogene 2
  • NSFP 3

External Ids for NSFP1 Gene

Previous HGNC Symbols for NSFP1 Gene

  • NSFP

Previous GeneCards Identifiers for NSFP1 Gene

  • GC17P044450

Summaries for NSFP1 Gene

GeneCards Summary for NSFP1 Gene

NSFP1 (N-Ethylmaleimide-Sensitive Factor Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NSFP1 Gene

Genomics for NSFP1 Gene

Regulatory Elements for NSFP1 Gene

Enhancers for NSFP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G046741 1.3 Ensembl ENCODE 24.6 +369.9 369906 2.6 ARNT ZFP64 SIN3A FEZF1 ZNF2 FOS SP3 JUNB REST ZNF592 ARL17B MRPL45P2 KANSL1-AS1 ENSG00000253347 ENSG00000262372 RPS7P11 LRRC37A17P KANSL1 NSFP1 RPS2P47
GH17G046189 1.8 FANTOM5 ENCODE dbSUPER 17.4 -179.2 -179241 7.6 CREB3L1 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 SP3 TBX21 LINC02210 LRRC37A4P KANSL1 ARL17B ENSG00000262372 LRRC37A2 KANSL1-AS1 NSFP1 RPS7P11 LRRC37A17P
GH17G046263 1.8 FANTOM5 Ensembl ENCODE 16 -106.9 -106889 4.5 CREB3L1 ZFP64 YBX1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 MEF2D LRRC37A4P LINC02210 ARL17B KANSL1 ENSG00000262372 RPS7P11 KANSL1-AS1 NSFP1 MAPK8IP1P1 RPS2P47
GH17G046106 1.6 Ensembl ENCODE dbSUPER 17.1 -264.8 -264813 2.4 PKNOX1 FOXA2 ARNT ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 SLC30A9 LINC02210 LRRC37A4P KANSL1 ARL17B ENSG00000262372 NSFP1 LOC101927060 RPS7P11 LRRC37A17P KANSL1-AS1
GH17G046162 1.4 Ensembl ENCODE dbSUPER 19.5 -209.2 -209174 2.2 HDAC1 ZSCAN4 ZEB1 ZNF23 EGR1 SCRT2 EGR2 ZNF362 ZNF680 ZNF280D LINC02210 LRRC37A4P RPS7P11 ARL17B ENSG00000262372 NSFP1 KANSL1 LOC101927060 KANSL1-AS1 LRRC37A17P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NSFP1 on UCSC Golden Path with GeneCards custom track

Promoters for NSFP1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095061 287 1801

Genomic Location for NSFP1 Gene

Chromosome:
17
Start:
46,372,813 bp from pter
End:
46,487,141 bp from pter
Size:
114,329 bases
Orientation:
Plus strand

Genomic View for NSFP1 Gene

Genes around NSFP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NSFP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NSFP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NSFP1 Gene

Proteins for NSFP1 Gene

Post-translational modifications for NSFP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NSFP1 Gene

Domains & Families for NSFP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NSFP1 Gene

Function for NSFP1 Gene

Phenotypes for NSFP1 Gene

GenomeRNAi human phenotypes for NSFP1:
genes like me logo Genes that share phenotypes with NSFP1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NSFP1 Gene

Localization for NSFP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NSFP1 Gene

Pathways & Interactions for NSFP1 Gene

SuperPathways for NSFP1 Gene

No Data Available

Interacting Proteins for NSFP1 Gene

Gene Ontology (GO) - Biological Process for NSFP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NSFP1 Gene

Drugs & Compounds for NSFP1 Gene

No Compound Related Data Available

Transcripts for NSFP1 Gene

mRNA/cDNA for NSFP1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NSFP1 Gene

N-ethylmaleimide-sensitive factor pseudogene 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NSFP1 Gene

No ASD Table

Relevant External Links for NSFP1 Gene

GeneLoc Exon Structure for
NSFP1
ECgene alternative splicing isoforms for
NSFP1

Expression for NSFP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NSFP1 Gene

mRNA differential expression in normal tissues according to GTEx for NSFP1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.3) and Brain - Anterior cingulate cortex (BA24) (x4.8).

NURSA nuclear receptor signaling pathways regulating expression of NSFP1 Gene:

NSFP1

SOURCE GeneReport for Unigene cluster for NSFP1 Gene:

Hs.735097
genes like me logo Genes that share expression patterns with NSFP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NSFP1 Gene

Orthologs for NSFP1 Gene

Evolution for NSFP1 Gene

ENSEMBL:
Gene Tree for NSFP1 (if available)
TreeFam:
Gene Tree for NSFP1 (if available)

No data available for Orthologs for NSFP1 Gene

Paralogs for NSFP1 Gene

No data available for Paralogs for NSFP1 Gene

Variants for NSFP1 Gene

Sequence variations from dbSNP and Humsavar for NSFP1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000860266 -- 46,390,189(+) TATAA(-/G)GGCCA intron-variant
rs1001012866 -- 46,422,706(+) AAGAT(A/C)GTAGG intron-variant
rs1001146486 -- 46,418,939(+) AGGTG(C/T)TCAGG intron-variant
rs1001397785 -- 46,389,403(+) AGACA(A/G)AAGAG intron-variant
rs1001895160 -- 46,388,568(+) AAAAA(-/G)AAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NSFP1 Gene

Variant ID Type Subtype PubMed ID
dgv127e55 CNV gain 17911159
dgv15n14 CNV loss 18776910
dgv16n14 CNV loss 18776910
dgv29e213 CNV loss 24956385
dgv30e213 CNV gain 24956385
dgv3185n100 CNV gain 25217958
dgv3188n100 CNV gain 25217958
dgv3189n100 CNV gain 25217958
dgv3190n100 CNV gain 25217958
dgv3196n100 CNV gain+loss 25217958
dgv3198n100 CNV loss 25217958
dgv3206n100 CNV loss 25217958
dgv3233n100 CNV gain 25217958
dgv3239n100 CNV gain 25217958
dgv3240n100 CNV gain 25217958
dgv3241n100 CNV loss 25217958
dgv3242n100 CNV gain+loss 25217958
dgv3246n100 CNV gain+loss 25217958
dgv3247n100 CNV gain 25217958
dgv3248n100 CNV loss 25217958
dgv3249n100 CNV gain 25217958
dgv3250n100 CNV gain+loss 25217958
dgv3251n100 CNV loss 25217958
dgv3252n100 CNV loss 25217958
dgv3253n100 CNV loss 25217958
dgv3254n100 CNV gain+loss 25217958
dgv3255n100 CNV gain 25217958
dgv3256n100 CNV loss 25217958
dgv3257n100 CNV loss 25217958
dgv3258n100 CNV gain+loss 25217958
dgv3259n100 CNV loss 25217958
dgv3260n100 CNV loss 25217958
dgv5623n54 CNV loss 21841781
dgv5628n54 CNV loss 21841781
dgv5641n54 CNV loss 21841781
dgv5642n54 CNV loss 21841781
dgv5643n54 CNV gain 21841781
dgv5644n54 CNV gain 21841781
dgv5645n54 CNV loss 21841781
dgv5646n54 CNV gain+loss 21841781
dgv5647n54 CNV loss 21841781
dgv5648n54 CNV gain+loss 21841781
dgv5649n54 CNV loss 21841781
dgv5650n54 CNV gain 21841781
dgv5651n54 CNV loss 21841781
dgv5652n54 CNV gain 21841781
dgv5653n54 CNV loss 21841781
dgv5654n54 CNV gain 21841781
dgv5655n54 CNV loss 21841781
dgv5657n54 CNV loss 21841781
dgv5658n54 CNV loss 21841781
dgv5659n54 CNV loss 21841781
dgv5660n54 CNV gain+loss 21841781
dgv5661n54 CNV loss 21841781
dgv5662n54 CNV gain 21841781
dgv5663n54 CNV gain 21841781
dgv939e212 CNV gain 25503493
dgv940e212 CNV loss 25503493
esv1003686 CNV gain 20482838
esv21783 CNV gain+loss 19812545
esv2421412 OTHER complex 20811451
esv2656635 CNV deletion 23128226
esv2758692 CNV gain+loss 17122850
esv2760451 CNV gain+loss 21179565
esv2762433 CNV gain+loss 21179565
esv33048 CNV gain+loss 17666407
esv3893017 CNV gain+loss 25118596
esv3893018 CNV loss 25118596
esv3893019 CNV gain+loss 25118596
esv3893020 CNV gain 25118596
esv3893021 CNV gain 25118596
esv3893023 CNV gain+loss 25118596
esv3893024 CNV gain 25118596
nsv1063380 CNV gain 25217958
nsv1070410 CNV deletion 25765185
nsv1072741 CNV deletion 25765185
nsv1126463 CNV deletion 24896259
nsv1133408 CNV deletion 24896259
nsv1136238 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv1160494 CNV deletion 26073780
nsv163 CNV deletion 15895083
nsv2070 CNV deletion 18451855
nsv428343 CNV gain+loss 18775914
nsv433451 CNV gain 18776910
nsv442749 CNV gain+loss 18776908
nsv469644 CNV gain+loss 16826518
nsv471402 CNV gain 19718026
nsv471514 CNV gain 19718026
nsv471700 CNV gain+loss 15918152
nsv510715 CNV deletion 20534489
nsv511057 OTHER complex 20534489
nsv516807 CNV gain+loss 19592680
nsv575266 CNV gain 21841781
nsv575314 CNV gain+loss 21841781
nsv575360 CNV loss 21841781
nsv575361 CNV loss 21841781
nsv575362 CNV gain+loss 21841781
nsv575369 CNV loss 21841781
nsv575387 CNV gain+loss 21841781
nsv575388 CNV gain 21841781
nsv575389 CNV loss 21841781
nsv575421 CNV gain+loss 21841781
nsv819319 CNV loss 19587683
nsv820933 CNV deletion 20802225
nsv821581 CNV deletion 20802225
nsv821687 CNV gain 15273396
nsv833463 CNV loss 17160897
nsv833464 CNV gain 17160897
nsv833465 CNV loss 17160897
nsv9564 CNV gain+loss 18304495
nsv960604 CNV duplication 23825009
nsv978553 CNV duplication 23825009

Relevant External Links for NSFP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NSFP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NSFP1 Gene

Disorders for NSFP1 Gene

Relevant External Links for NSFP1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NSFP1

No disorders were found for NSFP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NSFP1 Gene

Publications for NSFP1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for NSFP1 Gene

Sources for NSFP1 Gene

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