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Aliases for NSFP1 Gene

Aliases for NSFP1 Gene

  • N-Ethylmaleimide-Sensitive Factor Pseudogene 1 2 3
  • N-Ethylmaleimide-Sensitive Factor Pseudogene 2
  • NSFP 3

External Ids for NSFP1 Gene

Previous HGNC Symbols for NSFP1 Gene

  • NSFP

Previous GeneCards Identifiers for NSFP1 Gene

  • GC17P044450

Summaries for NSFP1 Gene

GeneCards Summary for NSFP1 Gene

NSFP1 (N-Ethylmaleimide-Sensitive Factor Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NSFP1 Gene

Genomics for NSFP1 Gene

Genomic Location for NSFP1 Gene

Start:
46,372,813 bp from pter
End:
46,487,141 bp from pter
Size:
114,329 bases
Orientation:
Plus strand

Genomic View for NSFP1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NSFP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NSFP1 Gene

No data available for Regulatory Elements for NSFP1 Gene

Proteins for NSFP1 Gene

Post-translational modifications for NSFP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NSFP1 Gene

Domains for NSFP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NSFP1 Gene

Function for NSFP1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NSFP1 Gene

Localization for NSFP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NSFP1 Gene

Pathways for NSFP1 Gene

SuperPathways for NSFP1 Gene

No Data Available

Interacting Proteins for NSFP1 Gene

Gene Ontology (GO) - Biological Process for NSFP1 Gene

None

No data available for Pathways by source for NSFP1 Gene

Transcripts for NSFP1 Gene

mRNA/cDNA for NSFP1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NSFP1 Gene

N-ethylmaleimide-sensitive factor pseudogene 1:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NSFP1

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NSFP1 Gene

No ASD Table

Relevant External Links for NSFP1 Gene

GeneLoc Exon Structure for
NSFP1
ECgene alternative splicing isoforms for
NSFP1

Expression for NSFP1 Gene

mRNA expression in normal human tissues for NSFP1 Gene

mRNA differential expression in normal tissues according to GTEx for NSFP1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (5.3) and Brain - Anterior cingulate cortex (BA24) (4.8).

SOURCE GeneReport for Unigene cluster for NSFP1 Gene Hs.735097

genes like me logo Genes that share expressions with NSFP1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NSFP1 Gene

Orthologs for NSFP1 Gene

Evolution for NSFP1 Gene

ENSEMBL:
Gene Tree for NSFP1 (if available)
TreeFam:
Gene Tree for NSFP1 (if available)

No data available for Orthologs for NSFP1 Gene

Paralogs for NSFP1 Gene

No data available for Paralogs for NSFP1 Gene

Variants for NSFP1 Gene

Sequence variations from dbSNP and Humsavar for NSFP1 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs273517 -- 46,371,505(-) ACCCC(A/G)GAGGC upstream-variant-2KB
rs273518 -- 46,373,478(+) AGCGA(C/G)TGTCA intron-variant
rs273519 -- 46,373,698(-) CTTTC(A/G)CCCCC intron-variant
rs2042533 -- 46,401,055(+) ATCAG(A/T)TCATT intron-variant
rs62071428 -- 46,374,400(+) ATATG(A/C)CAGTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NSFP1 Gene

Variant ID Type Subtype PubMed ID
dgv127e55 CNV Gain 17911159
dgv973e1 CNV Complex 17122850
dgv974e1 CNV Complex 17122850
dgv975e1 CNV Complex 17122850
dgv976e1 CNV Complex 17122850
nsv516807 CNV Gain+Loss 19592680
nsv908315 CNV Gain 21882294
nsv821687 CNV Gain 15273396
esv33048 CNV Gain+Loss 17666407
nsv9564 CNV Gain+Loss 18304495
esv21783 CNV Gain+Loss 19812545
dgv978e1 CNV Complex 17122850
esv2656635 CNV Deletion 23128226
nsv908326 CNV Gain 21882294
nsv908327 CNV Loss 21882294
dgv3185n71 CNV Gain 21882294
nsv908329 CNV Gain 21882294
nsv2070 CNV Loss 18451855
nsv511057 CNV Complex 20534489
dgv3186n71 CNV Loss 21882294
nsv163 CNV Loss 15895083
dgv3187n71 CNV Gain 21882294
nsv821581 CNV Deletion 20802225
nsv908334 CNV Gain+Loss 21882294
dgv3188n71 CNV Gain 21882294
dgv983e1 CNV Complex 17122850
dgv984e1 CNV Complex 17122850
dgv985e1 CNV Complex 17122850
nsv428343 CNV Gain+Loss 18775914
nsv442749 CNV CNV 18776908
dgv3189n71 CNV Loss 21882294
dgv3190n71 CNV Gain+Loss 21882294
dgv3191n71 CNV Loss 21882294
dgv3192n71 CNV Gain+Loss 21882294
dgv3193n71 CNV Gain 21882294
dgv3194n71 CNV Loss 21882294
dgv3195n71 CNV Gain+Loss 21882294
dgv3196n71 CNV Gain 21882294
esv1003686 CNV Gain 20482838
dgv3197n71 CNV Gain 21882294
dgv3198n71 CNV Gain 21882294
esv2421412 OTHER Complex 20811451
dgv15n14 CNV Loss 18776910
nsv819319 CNV Loss 19587683
dgv3199n71 CNV Gain+Loss 21882294
dgv3200n71 CNV Loss 21882294
dgv3201n71 CNV Loss 21882294
nsv908458 CNV Loss 21882294
nsv908460 CNV Gain 21882294
dgv3202n71 CNV Gain+Loss 21882294
dgv3203n71 CNV Gain 21882294
nsv908482 CNV Gain 21882294
dgv3204n71 CNV Gain+Loss 21882294
nsv908487 CNV Gain+Loss 21882294
dgv3205n71 CNV Loss 21882294
dgv3206n71 CNV Gain 21882294
dgv3207n71 CNV Gain+Loss 21882294
nsv833463 CNV Loss 17160897
dgv3208n71 CNV Gain 21882294
dgv3209n71 CNV Gain+Loss 21882294
dgv3210n71 CNV Loss 21882294
dgv3211n71 CNV Loss 21882294
dgv3212n71 CNV Gain+Loss 21882294
nsv510715 CNV Loss 20534489
nsv433451 CNV Gain 18776910
nsv469644 CNV Complex 16826518
nsv471700 CNV Gain+Loss 15918152
nsv820933 CNV Deletion 20802225
nsv833464 CNV Gain 17160897
nsv908533 CNV Gain 21882294
dgv3214n71 CNV Gain+Loss 21882294
dgv3215n71 CNV Loss 21882294
dgv3216n71 CNV Gain 21882294
nsv908538 CNV Loss 21882294
dgv3217n71 CNV Loss 21882294
dgv3218n71 CNV Gain+Loss 21882294
dgv3219n71 CNV Gain+Loss 21882294
dgv3220n71 CNV Gain+Loss 21882294
nsv471514 CNV Duplication 19718026
dgv3221n71 CNV Gain 21882294
dgv16n14 CNV Loss 18776910
nsv471402 CNV Duplication 19718026
nsv833465 CNV Loss 17160897

Relevant External Links for NSFP1 Gene

HapMap Linkage Disequilibrium report
NSFP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NSFP1 Gene

Disorders for NSFP1 Gene

No disorders were found for NSFP1 Gene.

No data available for UniProtKB/Swiss-Prot for NSFP1 Gene

Publications for NSFP1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3

Products for NSFP1 Gene

Sources for NSFP1 Gene

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