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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NRROS Gene

protein-coding   GIFtS: 31
GCID: GC03P196371

Negative Regulator Of Reactive Oxygen Species

(Previous name: leucine rich repeat containing 33)
(Previous symbol: LRRC33)
  Search for NRROS
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Negative Regulator Of Reactive Oxygen Species1 2     GARPL12
LRRC331 2     UNQ30302
Leucine Rich Repeat Containing 331 2     Leucine-Rich Repeat-Containing Protein 332
ELLP30302     

External Ids:    HGNC: 246131   Entrez Gene: 3753872   Ensembl: ENSG000001740047   OMIM: 6153225   UniProtKB: Q86YC33   

Export aliases for NRROS gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for NRROS Gene: 
NRROS (negative regulator of reactive oxygen species) is a protein-coding gene. An important paralog of this gene is LRRC32.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for NRROS
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNRROS promoter sequence
   Search SABiosciences Chromatin IP Primers for NRROS

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NRROS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3q29   Ensembl cytogenetic band:  3q29   HGNC cytogenetic band: 3q29

NRROS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NRROS gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03P196371:  view genomic region     (about GC identifiers)

Start:
196,366,557 bp from pter      End:
196,388,875 bp from pter
Size:
22,319 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: LRC33_HUMAN, Q86YC3 (See protein sequence)
Recommended Name: Leucine-rich repeat-containing protein 33 precursor  
Size: 692 amino acids; 76366 Da
Subcellular location: Membrane; Single-pass type I membrane protein (Potential)

Explore the universe of human proteins at neXtProt for NRROS: NX_Q86YC3

Explore proteomics data for NRROS at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q86YC3

  • NRROS Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    NRROS Protein Expression
    REFSEQ proteins: NP_940967.1  
    ENSEMBL proteins: 
     ENSP00000328625  

    Human Recombinant Protein Products for NRROS: 
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    Browse Proteins at Cloud-Clone Corp. 

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005886plasma membrane IEA--
    GO:0016021integral to membrane IEA--

    NRROS for ontologies           About GeneDecksing



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    Browse ELISAs at Cloud-Clone Corp. 
    Browse CLIAs at Cloud-Clone Corp.


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    2 InterPro protein domains:
     IPR003591 Leu-rich_rpt_typical-subtyp
     IPR001611 Leu-rich_rpt

    Graphical View of Domain Structure for InterPro Entry Q86YC3

    ProtoNet protein and cluster: Q86YC3

    UniProtKB/Swiss-Prot: LRC33_HUMAN, Q86YC3
    Similarity: Contains 21 LRR (leucine-rich) repeats


    NRROS for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding ----
         
    NRROS for ontologies           About GeneDecksing


    Phenotypes:
         4 GenomeRNAi human phenotypes for NRROS:
     Decreased NANOG protein expres  Decreased OCT4 protein express  Decreased POU5F1-GFP protein e  Decreased cell number and incr 

         1 MGI phenotypic allele for Lrrc33 (no phenotypes)

    NRROS for phenotypes           About GeneDecksing

    Animal Models:
         MGI mouse knock-out Nrrostm1Lex for NRROS

       inGenious Targeting Laboratory - Custom generated mouse model solutions for NRROS 
       inGenious Targeting Laboratory - Custom generated inducible mouse model solutions for NRROS

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    SwitchGear 3'UTR luciferase reporter plasmidNRROS 3' UTR sequence
    Inhib. RNA
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NRROS


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NRROS

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0045087innate immune response IEA--

    NRROS for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for NRROS (LRC33)

    Search CenterWatch for drugs/clinical trials and news about NRROS / LRC33

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for NRROS gene: 
    NM_198565.1  

    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000328557(uc003fwv.3) ENST00000461791
    miRNA
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    Inhib. RNA
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                         Customized lentivirus expression plasmids for stable overexpression of NRROS 
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NRROS

    24/122 AceView cDNA sequences (see all 122):

    BE326876 AW193851 BM564927 BU731672 AK000529 BM709023 AI810352 BG105919 
    AA132190 BU732488 AA448292 BM694867 AL133913 BU159626 BQ130655 AW299992 
    BE673281 BM694954 CR619710 BI760115 BP432100 NM_198565 AL554188 AL041398 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section
    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: --


    NRROS expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database 
     5/2 selected tissues (see all 2) fully expand
     
     Endothelium (Cardiovascular System)
             Endothelial-like cells ( Derivation and purification of endothelial precursor cells...
     
     Blood (Hematopoietic System)

    See NRROS Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for NRROS
        SABiosciences Custom PCR Arrays for NRROS
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NRROS

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for NRROS gene from 5/11 species (see all 11)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Lrrc331 , 5 leucine rich repeat containing 331, 5 82.32(n)1
    80.78(a)1
      16 (22.40 cM)5
    2241091  NM_146069.41  NP_666181.21 
     321427855 
    chicken
    (Gallus gallus)
    Aves LRRC331 leucine rich repeat containing 33 63.35(n)
    54.68(a)
      424857  XM_422668.2  XP_422668.1 
    lizard
    (Anolis carolinensis)
    Reptilia LRRC336
    Uncharacterized protein
    52(a)
    1 ↔ 1
    3(30776395-30782895)
    zebrafish
    (Danio rerio)
    Actinopterygii lrrc331 leucine rich repeat containing 33 47.83(n)
    39.25(a)
      445318  NM_001003775.1  NP_001003775.1 
    worm
    (Caenorhabditis elegans)
    Secernentea lron-56
    Protein LRON-5
    21(a)
    1 → many
    III(4623052-4626173)


    ENSEMBL Gene Tree for NRROS (if available)
    TreeFam Gene Tree for NRROS (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for NRROS gene
    LRRC322  

    NRROS for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/724 SNPs in NRROS are shown (see all 724)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 3 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs632560621,2
    C--196220351(+) GAGAC-/GATGAGG 1 -- us2k10--------
    rs1846171721,2
    --196220365(+) GTGGGC/TGGATC 1 -- us2k10--------
    rs1421895271,2
    --196220417(+) GAAATC/TCCATC 1 -- us2k10--------
    rs1882956631,2
    --196220527(+) CAGAGG/TTTGCA 1 -- us2k10--------
    rs1140808431,2
    C,F--196220630(+) GTTATG/TGTGAC 1 -- us2k11Minor allele frequency- T:0.09WA 118
    rs800803441,2
    C,F--196220725(+) TAGAAA/GTTAAA 1 -- us2k11Minor allele frequency- G:0.02WA 118
    rs9860111,2
    C,F,A,H--196220748(+) ccaacT/Agattg 1 -- us2k1 tfbs313Minor allele frequency- A:0.20MN EA NS NA WA CSA 852
    rs1809777641,2
    --196220829(+) TTTGCA/CACAAT 1 -- us2k10--------
    rs1842096111,2
    --196220928(+) AAGACA/GGAGTC 1 -- us2k10--------
    rs1463319581,2
    --196220965(+) AATGGC/TGTGAT 1 -- us2k10--------

    HapMap Linkage Disequilibrium report for NRROS (196366557 - 196388875 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for NRROS: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing NRROS
    DNA2.0 Custom Variant and Variant Library Synthesis for NRROS

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    NRROS for disorders           About MalaCards
    OMIM gene information: 615322    OMIM disorders: --


    NRROS for disorders           About GeneDecksing


    Export disorders for NRROS gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for NRROS gene integrated from 9 sources:
    (articles sorted by number of sources associating them with NRROS)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2, 3 Clark H.F.... Gray A.M. (2003)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Identification and characterization of a unique leucin e-rich repeat protein (LRRC33) that inhibits Toll-like receptor-mediated NF-kB a ctivation. (PubMed id 23545260)1 Liu J....Yang R. (2013)
    4. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 375387 HGNC: 24613 AceView: FLJ20522andUNQ3030 Ensembl:ENSG00000174004 euGenes: HUgn375387
    ECgene: NRROS H-InvDB: NRROS

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for NRROS Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for NRROS gene:
    Search GeneIP for patents involving NRROS

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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