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Aliases for NRN1L Gene

Aliases for NRN1L Gene

  • Neuritin 1 Like 2 3 5
  • Neuritin-Like Protein 3
  • MRCC2446 3
  • UNQ2446 3

External Ids for NRN1L Gene

Previous GeneCards Identifiers for NRN1L Gene

  • GC16P066478
  • GC16P067918
  • GC16P053791

Summaries for NRN1L Gene

GeneCards Summary for NRN1L Gene

NRN1L (Neuritin 1 Like) is a Protein Coding gene. Among its related pathways are Metabolism of proteins and Post-translational modification- synthesis of GPI-anchored proteins. An important paralog of this gene is NRN1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRN1L Gene

Genomics for NRN1L Gene

Regulatory Elements for NRN1L Gene

Enhancers for NRN1L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F067860 0.8 FANTOM5 Ensembl ENCODE 11.7 -22.5 -22501 4.1 SOX13 KLF1 PKNOX1 ZNF384 THRB ZNF121 ZNF664 ZNF316 GATA3 CTBP1 NRN1L THAP11 PSKH1 RANBP10 TSNAXIP1 FAM65A PRMT7 ACD PARD6A CARMIL2
GH16F067925 0.7 Ensembl ENCODE 11.7 +41.7 41711 1.4 PKNOX1 FEZF1 ZNF2 ZNF48 SCRT2 FOS PAF1 ZEB2 NR2F2 GLIS1 PSKH1 NRN1L SLC12A4 CENPT THAP11 EDC4 DPEP3 C16orf86 ENKD1 DUS2
GH16F067854 1.5 FANTOM5 Ensembl ENCODE 11.6 -27.5 -27530 4.6 PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A FEZF1 DMAP1 YY1 ZNF766 RANBP10 ACD NRN1L TSNAXIP1 DUS2 PSKH1 E2F4 PARD6A FAM65A PRMT7
GH16F067909 0.2 ENCODE 11.5 +25.4 25373 1.1 TBP ELF3 ARID4B THRB RAD21 YY1 RARA SCRT2 CREM KLF13 NRN1L EDC4 NUTF2 THAP11 DUS2 ACD PARD6A DDX28 TPPP3 PSKH1
GH16F067934 1 ENCODE 11.5 +51.5 51462 4.0 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 ARID4B SIN3A FEZF1 ZNF2 DPEP3 NRN1L PSKH1 EDC4 DUS2 LCAT NFATC3 RANBP10 DPEP2 HSD11B2
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NRN1L on UCSC Golden Path with GeneCards custom track

Genomic Location for NRN1L Gene

Chromosome:
16
Start:
67,884,805 bp from pter
End:
67,888,855 bp from pter
Size:
4,051 bases
Orientation:
Plus strand

Genomic View for NRN1L Gene

Genes around NRN1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRN1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRN1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRN1L Gene

Proteins for NRN1L Gene

  • Protein details for NRN1L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q496H8-NRN1L_HUMAN
    Recommended name:
    Neuritin-like protein
    Protein Accession:
    Q496H8
    Secondary Accessions:
    • Q6UWH7

    Protein attributes for NRN1L Gene

    Size:
    165 amino acids
    Molecular mass:
    17786 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NRN1L Gene

Post-translational modifications for NRN1L Gene

No Post-translational modifications

Other Protein References for NRN1L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NRN1L Gene

Domains & Families for NRN1L Gene

Protein Domains for NRN1L Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NRN1L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q496H8

UniProtKB/Swiss-Prot:

NRN1L_HUMAN :
  • Belongs to the neuritin family.
Family:
  • Belongs to the neuritin family.
genes like me logo Genes that share domains with NRN1L: view

No data available for Gene Families for NRN1L Gene

Function for NRN1L Gene

Gene Ontology (GO) - Molecular Function for NRN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042803 protein homodimerization activity IEA --
GO:0046982 protein heterodimerization activity IEA --
genes like me logo Genes that share ontologies with NRN1L: view

Phenotypes for NRN1L Gene

MGI mutant phenotypes for NRN1L:
inferred from 2 alleles
GenomeRNAi human phenotypes for NRN1L:
genes like me logo Genes that share phenotypes with NRN1L: view

Animal Models for NRN1L Gene

MGI Knock Outs for NRN1L:

Animal Model Products

  • Taconic Biosciences Mouse Models for NRN1L

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for NRN1L Gene

Localization for NRN1L Gene

Subcellular locations from UniProtKB/Swiss-Prot for NRN1L Gene

Cell membrane; Lipid-anchor, GPI-anchor.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NRN1L Gene COMPARTMENTS Subcellular localization image for NRN1L gene
Compartment Confidence
plasma membrane 4
extracellular 3

Gene Ontology (GO) - Cellular Components for NRN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005615 extracellular space IEA --
GO:0005886 plasma membrane IEA --
GO:0016020 membrane IEA --
GO:0030424 axon IEA --
GO:0031225 anchored component of membrane IEA --
genes like me logo Genes that share ontologies with NRN1L: view

Pathways & Interactions for NRN1L Gene

genes like me logo Genes that share pathways with NRN1L: view

Interacting Proteins for NRN1L Gene

Gene Ontology (GO) - Biological Process for NRN1L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007399 nervous system development IEA --
GO:1990138 neuron projection extension IEA --
genes like me logo Genes that share ontologies with NRN1L: view

No data available for SIGNOR curated interactions for NRN1L Gene

Transcripts for NRN1L Gene

mRNA/cDNA for NRN1L Gene

Unigene Clusters for NRN1L Gene

Neuritin 1-like:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NRN1L Gene

No ASD Table

Relevant External Links for NRN1L Gene

GeneLoc Exon Structure for
NRN1L
ECgene alternative splicing isoforms for
NRN1L

Expression for NRN1L Gene

mRNA expression in normal human tissues for NRN1L Gene

NURSA nuclear receptor signaling pathways regulating expression of NRN1L Gene:

NRN1L

SOURCE GeneReport for Unigene cluster for NRN1L Gene:

Hs.435464
genes like me logo Genes that share expression patterns with NRN1L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NRN1L Gene

Orthologs for NRN1L Gene

This gene was present in the common ancestor of chordates.

Orthologs for NRN1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NRN1L 34 35
  • 98.92 (n)
rat
(Rattus norvegicus)
Mammalia Nrn1l 34
  • 83.16 (n)
mouse
(Mus musculus)
Mammalia Nrn1l 34 16 35
  • 82.49 (n)
dog
(Canis familiaris)
Mammalia NRN1L 34
  • 74.3 (n)
chicken
(Gallus gallus)
Aves -- 35
  • 30 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia NRN1L 35
  • 40 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii nrn1lb 35
  • 35 (a)
OneToMany
nrn1la 35
  • 34 (a)
OneToMany
Species where no ortholog for NRN1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NRN1L Gene

ENSEMBL:
Gene Tree for NRN1L (if available)
TreeFam:
Gene Tree for NRN1L (if available)

Paralogs for NRN1L Gene

Paralogs for NRN1L Gene

(1) SIMAP similar genes for NRN1L Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with NRN1L: view

Variants for NRN1L Gene

Sequence variations from dbSNP and Humsavar for NRN1L Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111674319 -- 67,884,907(+) GGATG(A/G)TGCGC downstream-variant-500B, reference, missense
rs114146021 -- 67,886,855(+) GGTCT(A/G)TCTGA downstream-variant-500B
rs114883420 -- 67,886,084(+) CCGTC(A/C/G/T)GAATA reference, missense
rs115490984 -- 67,884,962(+) GAGGC(C/T)GTTGC downstream-variant-500B, reference, missense
rs11558520 -- 67,884,336(-) TGCCC(C/T)GGGCC upstream-variant-2KB, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NRN1L Gene

Variant ID Type Subtype PubMed ID
nsv1844 CNV deletion 18451855
nsv522852 CNV gain 19592680
nsv524363 CNV loss 19592680

Variation tolerance for NRN1L Gene

Residual Variation Intolerance Score: 93.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 7.18; 80.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NRN1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRN1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NRN1L Gene

Disorders for NRN1L Gene

Relevant External Links for NRN1L

Genetic Association Database (GAD)
NRN1L
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NRN1L

No disorders were found for NRN1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRN1L Gene

Publications for NRN1L Gene

  1. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PMID: 12975309) Clark H.F. … Gray A.M. (Genome Res. 2003) 2 3 4 64
  2. Biological insights from 108 schizophrenia-associated genetic loci. (PMID: 25056061) (Nature 2014) 3 64
  3. cpg15 and cpg15-2 constitute a family of activity-regulated ligands expressed differentially in the nervous system to promote neurite growth and neuronal survival. (PMID: 18265009) Fujino T. … Nedivi E. (J. Comp. Neurol. 2008) 3 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NRN1L Gene

Sources for NRN1L Gene

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