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NRIP2 Gene

protein-coding   GIFtS: 49
GCID: GC12M002935

Nuclear Receptor Interacting Protein 2

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Nuclear Receptor Interacting Protein 21 2
Nuclear Receptor-Interacting Protein 22

External Ids:    HGNC: 230781   Entrez Gene: 837142   Ensembl: ENSG000000537027   UniProtKB: Q9BQI93   

Export aliases for NRIP2 gene to outside databases

Previous GC identifers: GC12M002813 GC12M002804


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NRIP2 Gene:
NRIP2 (nuclear receptor interacting protein 2) is a protein-coding gene. Diseases associated with NRIP2 include asthma, and neuronitis. GO annotations related to this gene include aspartic-type endopeptidase activity. An important paralog of this gene is NRIP3.

UniProtKB/Swiss-Prot: NRIP2_HUMAN, Q9BQI9
Function: Down-regulates transcriptional activation by nuclear receptors such as NR1F2 (By similarity)

Gene Wiki entry for NRIP2 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000012.12  NT_009759.17  NC_018923.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the NRIP2 gene promoter:
         c-Fos   NF-1/L   NF-1   AP-1   HTF   Fra-1   FosB   GATA-2   HFH-1   c-Jun   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNRIP2 promoter sequence
   Search Chromatin IP Primers for NRIP2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NRIP2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12p13.33   Ensembl cytogenetic band:  12p13.33   HGNC cytogenetic band: 12p13.33

NRIP2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NRIP2 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M002935:  view genomic region     (about GC identifiers)

Start:
2,934,514 bp from pter      End:
2,944,710 bp from pter
Size:
10,197 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: NRIP2_HUMAN, Q9BQI9 (See protein sequence)
Recommended Name: Nuclear receptor-interacting protein 2  
Size: 281 amino acids; 31331 Da
Subunit: Interacts with NR1F2, RARA and THRB in a ligand-dependent manner (By similarity)

Explore the universe of human proteins at neXtProt for NRIP2: NX_Q9BQI9

Explore proteomics data for NRIP2 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See NRIP2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_113662.1  
    ENSEMBL proteins: 
     ENSP00000337501   ENSP00000446283   ENSP00000438338  

    NRIP2 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR021109 Peptidase_aspartic_dom
     IPR019103 Peptidase_aspartic_DDI1-type

    Graphical View of Domain Structure for InterPro Entry Q9BQI9

    ProtoNet protein and cluster: Q9BQI9


    NRIP2 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: NRIP2_HUMAN, Q9BQI9
    Function: Down-regulates transcriptional activation by nuclear receptors such as NR1F2 (By similarity)

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004190aspartic-type endopeptidase activity IEA--
    GO:0005515protein binding ----
         
    NRIP2 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for NRIP2:
     Increased G1 DNA content  Increased cell size 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for NRIP2
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    miRNA
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    miRTarBase miRNAs that target NRIP2:
    hsa-mir-335-5p (MIRT017443), hsa-mir-484 (MIRT041725)

    Block miRNA regulation of human, mouse, rat NRIP2 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate NRIP2 (see all 10):
    hsa-miR-4251 hsa-miR-27a hsa-miR-128 hsa-miR-3681* hsa-miR-942 hsa-miR-2355-5p hsa-miR-3199 hsa-miR-608
    SwitchGear 3'UTR luciferase reporter plasmidNRIP2 3' UTR sequence
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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    NRIP2_HUMAN, Q9BQI9: Nucleus (By similarity)
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    extracellular1
    mitochondrion1
    peroxisome1

    Gene Ontology (GO): 2 cellular component terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005737cytoplasm IDA--

    NRIP2 for ontologies           About GeneDecksing


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NRIP2
    Interactions:

        Search GeneGlobe Interaction Network for NRIP2

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for NRIP2 (Q9BQI92, 3 ENSP000003375014) via UniProtKB, MINT, STRING, and/or I2D (see all 49)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SF3A2Q154282, 3, ENSP000002214944MINT-5206187 I2D: score=1 STRING: ENSP00000221494
    RARAP102763, ENSP000002540664I2D: score=2 STRING: ENSP00000254066
    RORBQ927533, ENSP000003660934I2D: score=2 STRING: ENSP00000366093
    PSMC3ENSP000002988524STRING: ENSP00000298852
    PSMD2ENSP000003101294STRING: ENSP00000310129
    About this table

    Gene Ontology (GO): 3 biological process terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000122negative regulation of transcription from RNA polymerase II promoter IEA--
    GO:0006351transcription, DNA-templated IEA--
    GO:0006508proteolysis ----

    NRIP2 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
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    Browse Tocris compounds for NRIP2



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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    REFSEQ mRNAs for NRIP2 gene: 
    NM_031474.2  

    Unigene Cluster for NRIP2:

    Nuclear receptor interacting protein 2
    Hs.530816  [show with all ESTs]
    Unigene Representative Sequence: NM_031474
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000337508(uc001qlc.3 uc010sed.1) ENST00000542990 ENST00000542386

    miRNA
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    Selected qRT-PCR Assays for microRNAs that regulate NRIP2 (see all 10):
    hsa-miR-4251 hsa-miR-27a hsa-miR-128 hsa-miR-3681* hsa-miR-942 hsa-miR-2355-5p hsa-miR-3199 hsa-miR-608
    SwitchGear 3'UTR luciferase reporter plasmidNRIP2 3' UTR sequence
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat NRIP2
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    GenScript: all cDNA clones in your preferred vector: NRIP2 (NM_031474)
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NRIP2
    Primer
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    OriGene qSTAR qPCR primer pairs in human, mouse for NRIP2
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      QuantiTect SYBR Green Assays in human, mouse, rat NRIP2
      QuantiFast Probe-based Assays in human, mouse, rat NRIP2

    Additional mRNA sequence: 

    AK054740.1 AL136557.1 BC036063.1 BC131562.1 

    2 DOTS entries:

    DT.40211045  DT.100018073 

    18 AceView cDNA sequences:

    AL136557 CD518404 AK098063 CA397932 AK054740 NM_031474 BC036063 AA322737 
    AA297081 BP362674 BI553579 BF370439 AW138498 AA367570 BQ327862 AI184847 
    BF747530 BQ329091 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    NRIP2 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: GATTAGGAGT
    NRIP2 Expression
    About this image


    NRIP2 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 2) fully expand
     
     Brain (Nervous System)
             Cerebellum
     
     Dermis (Integumentary System)
    NRIP2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    NRIP2 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.530816
        Custom PCR Arrays for NRIP2
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NRIP2

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of chordates.

    Orthologs for NRIP2 gene from Selected species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nrip21 , 5 nuclear receptor interacting protein 21, 5 86.03(n)1
    83.41(a)1
      6 (62.99 cM)5
    603451  NM_021717.21  NP_068363.21 
     1283992965 
    zebrafish
    (Danio rerio)
    Actinopterygii nrip21 nuclear receptor interacting protein 2 61.2(n)
    58.47(a)
      565865  NM_001123515.1  NP_001116987.1 


    ENSEMBL Gene Tree for NRIP2 (if available)
    TreeFam Gene Tree for NRIP2 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for NRIP2 gene
    NRIP32  
    1 SIMAP similar gene for NRIP2 using alignment to 4 protein entries:     NRIP2_HUMAN (see all proteins):
    NRIP3

    NRIP2 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for NRIP2 (see all 261)    About this table    
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1908066161,2
    --2934807(+) GTGTCA/CCAGGC 1 -- ut310--------
    rs1463635741,2
    --2934828(+) ATCCCA/GGTTCT 1 -- ut310--------
    rs360372191,2
    C,F--2934992(+) GGCACG/AAACTT 1 -- ut313Minor allele frequency- A:0.33NA 6
    rs1384153361,2
    C--2935090(+) TACCTA/GGCTAA 1 -- ut310--------
    rs1833619751,2
    --2935263(+) AGAGAC/TTCAAA 1 -- ut310--------
    rs561912101,2
    C,F--2935296(+) ATCTGC/GCGTCT 1 -- ut310--------
    rs1908746311,2
    --2935323(+) CTCTTA/CACAGT 1 -- ut310--------
    rs57960301,2
    C--2935371(+) ACTTTA/-AAAAA 1 -- ut31 trp31Minor allele frequency- -:0.00NA 2
    rs23348681,2
    C,F,A,H--2935499(+) GCCTAA/GTGAGG 1 -- ut31 ese318Minor allele frequency- G:0.13NS EA NA WA 2340
    rs42931801,2
    H--2935517(+) TTCTAG/TAAATC 1 -- ut31 ese34Minor allele frequency- T:0.00NS EA 420

    HapMap Linkage Disequilibrium report for NRIP2 (2934514 - 2944710 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for NRIP2:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv832311CNV Loss17160897
    dgv19n68CNV Loss17160897

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing NRIP2
    DNA2.0 Custom Variant and Variant Library Synthesis for NRIP2

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    3 diseases for NRIP2:    
    About MalaCards
    asthma    neuronitis    endotheliitis


    NRIP2 for disorders           About GeneDecksing

    Genetic Association Database (GAD): NRIP2
    Human Genome Epidemiology (HuGE) Navigator: NRIP2 (1 document)

    Export disorders for NRIP2 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for NRIP2 gene, integrated from 10 sources (see all 14):
    (articles sorted by number of sources associating them with NRIP2)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PubMed id 11230166)1, 2, 3 Wiemann S.... Poustka A. (Genome Res. 2001)
    2. Association of the RIP2 gene with childhood atopic asthma. (PubMed id 17075290)1, 4 Nakashima K....Tamari M. (Allergol Int 2006)
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    4. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
    5. Composition and three-dimensional EM structure of double affinity- purified, human prespliceosomal A complexes. (PubMed id 17332742)1 Behzadnia N.... Luehrmann R. (EMBO J. 2007)
    6. The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (Nucleic Acids Res. 2006)
    7. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (Genome Res. 2006)
    8. The finished DNA sequence of human chromosome 12. (PubMed id 16541075)2 Scherer S.E.... Gibbs R.A. (Nature 2006)
    9. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1 Ota T.... Sugano S. (Nat. Genet. 2004)
    10. From ORFeome to biology: a functional genomics pipeline. (PubMed id 15489336)1 Wiemann S....Poustka A. (Genome Res. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 83714 HGNC: 23078 AceView: NRIP2 Ensembl:ENSG00000053702 euGenes: HUgn83714
    ECgene: NRIP2 H-InvDB: NRIP2

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for NRIP2 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for NRIP2 gene:
    Search GeneIP for patents involving NRIP2

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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