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Aliases for NRG3-AS1 Gene

Subcategory (RNA class) for NRG3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NRG3-AS1 Gene

  • NRG3 Antisense RNA 1 2 3 5
  • NRG3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 10 Open Reading Frame 100 2
  • Em:AC010157.1 3
  • C10orf100 3

External Ids for NRG3-AS1 Gene

Previous HGNC Symbols for NRG3-AS1 Gene

  • C10orf100

Previous GeneCards Identifiers for NRG3-AS1 Gene

  • GC10M083988

Summaries for NRG3-AS1 Gene

GeneCards Summary for NRG3-AS1 Gene

NRG3-AS1 (NRG3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRG3-AS1 Gene

Genomics for NRG3-AS1 Gene

Regulatory Elements for NRG3-AS1 Gene

Enhancers for NRG3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G082288 0.4 ENCODE 10.9 -55.8 -55821 1.3 FOS NRG3-AS1 ENSG00000229458 RNU6-441P GC10P082341
GH10G082266 0.7 ENCODE 0.3 -34.2 -34178 1.5 CTCF PKNOX1 ZNF654 ZNF146 ZNF362 MTA2 TRIM22 ZNF384 ATF2 TBX21 RNU6-441P NRG3-AS1 GC10P082341
GH10G082251 0.5 ENCODE 0.4 -18.8 -18781 0.7 MTA2 SMARCA4 IKZF1 EZH2 ENSG00000229458 RNU6-441P NRG3-AS1 GC10P082341
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NRG3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NRG3-AS1 Gene

Chromosome:
10
Start:
82,228,985 bp from pter
End:
82,232,920 bp from pter
Size:
3,936 bases
Orientation:
Minus strand

Genomic View for NRG3-AS1 Gene

Genes around NRG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRG3-AS1 Gene

Proteins for NRG3-AS1 Gene

Post-translational modifications for NRG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG3-AS1 Gene

Domains & Families for NRG3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NRG3-AS1 Gene

Function for NRG3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG3-AS1 Gene

Localization for NRG3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NRG3-AS1 Gene

Pathways & Interactions for NRG3-AS1 Gene

SuperPathways for NRG3-AS1 Gene

No Data Available

Interacting Proteins for NRG3-AS1 Gene

Gene Ontology (GO) - Biological Process for NRG3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NRG3-AS1 Gene

Drugs & Compounds for NRG3-AS1 Gene

No Compound Related Data Available

Transcripts for NRG3-AS1 Gene

mRNA/cDNA for NRG3-AS1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NRG3-AS1 Gene

No ASD Table

Relevant External Links for NRG3-AS1 Gene

GeneLoc Exon Structure for
NRG3-AS1
ECgene alternative splicing isoforms for
NRG3-AS1

Expression for NRG3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NRG3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NRG3-AS1 Gene

This gene is overexpressed in Testis (x41.2) and Pituitary (x5.0).
genes like me logo Genes that share expression patterns with NRG3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NRG3-AS1 Gene

Orthologs for NRG3-AS1 Gene

Evolution for NRG3-AS1 Gene

ENSEMBL:
Gene Tree for NRG3-AS1 (if available)
TreeFam:
Gene Tree for NRG3-AS1 (if available)

No data available for Orthologs for NRG3-AS1 Gene

Paralogs for NRG3-AS1 Gene

No data available for Paralogs for NRG3-AS1 Gene

Variants for NRG3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NRG3-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000084391 -- 82,229,236(+) ATTAG(A/C)ATAGA intron-variant
rs1000329804 -- 82,229,634(+) GGCAG(C/T)AGGAG intron-variant
rs1000434994 -- 82,229,539(+) GAGGT(A/T)TAATT intron-variant
rs1001516056 -- 82,233,281(+) AATGG(C/T)GTGTA intron-variant, upstream-variant-2KB
rs1001569900 -- 82,233,104(+) TCACG(C/T)CTGTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NRG3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3891873 CNV gain 25118596
esv3891875 CNV loss 25118596
nsv1141879 OTHER inversion 24896259
nsv551704 CNV loss 21841781

Relevant External Links for NRG3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NRG3-AS1 Gene

Disorders for NRG3-AS1 Gene

Relevant External Links for NRG3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NRG3-AS1

No disorders were found for NRG3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG3-AS1 Gene

Publications for NRG3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  2. A transcript finishing initiative for closing gaps in the human transcriptome. (PMID: 15197164) Sogayar M.C. … Zanette D.L. (Genome Res. 2004) 3 64
  3. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams M.D. … White O. (Nature 1995) 3 64

Products for NRG3-AS1 Gene

Sources for NRG3-AS1 Gene

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