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Aliases for NRG1-IT3 Gene

Subcategory (RNA class) for NRG1-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NRG1-IT3 Gene

  • NRG1 Intronic Transcript 3 2 3 5
  • NRG1 Intronic Transcript 3 (Non-Protein Coding) 2

External Ids for NRG1-IT3 Gene

Previous GeneCards Identifiers for NRG1-IT3 Gene

  • GC08P032299

Summaries for NRG1-IT3 Gene

GeneCards Summary for NRG1-IT3 Gene

NRG1-IT3 (NRG1 Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRG1-IT3 Gene

Genomics for NRG1-IT3 Gene

Regulatory Elements for NRG1-IT3 Gene

Enhancers for NRG1-IT3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F032432 0.5 Ensembl ENCODE 0.4 -7.5 -7516 1.7 LOC105379361 NRG1-IT3
GH08F032429 0.4 ENCODE 0.4 -10.8 -10759 1.7 CEBPB EP300 NRG1 LOC105379361 NRG1-IT3
GH08F032430 0.4 ENCODE 0.4 -11.9 -11933 0.2 ATF3 CEBPB LOC105379361 NRG1-IT3
GH08F032486 0.8 Ensembl ENCODE 0.2 +46.8 46837 2.1 SMARCA4 POLR2A MAX MYC NRG1-IT3 GC08M032358
GH08F032511 0.6 FANTOM5 ENCODE 0.2 +72.5 72524 3.4 NRG1 NRG1-IT3 GC08M032358
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NRG1-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Location for NRG1-IT3 Gene

Chromosome:
8
Start:
32,440,746 bp from pter
End:
32,442,725 bp from pter
Size:
1,980 bases
Orientation:
Plus strand

Genomic View for NRG1-IT3 Gene

Genes around NRG1-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRG1-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG1-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRG1-IT3 Gene

Proteins for NRG1-IT3 Gene

Post-translational modifications for NRG1-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG1-IT3 Gene

Domains & Families for NRG1-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NRG1-IT3 Gene

Function for NRG1-IT3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG1-IT3 Gene

Localization for NRG1-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NRG1-IT3 Gene

Pathways & Interactions for NRG1-IT3 Gene

SuperPathways for NRG1-IT3 Gene

No Data Available

Interacting Proteins for NRG1-IT3 Gene

Gene Ontology (GO) - Biological Process for NRG1-IT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NRG1-IT3 Gene

Transcripts for NRG1-IT3 Gene

mRNA/cDNA for NRG1-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NRG1-IT3 Gene

NRG1 intronic transcript 3 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NRG1-IT3 Gene

No ASD Table

Relevant External Links for NRG1-IT3 Gene

GeneLoc Exon Structure for
NRG1-IT3
ECgene alternative splicing isoforms for
NRG1-IT3

Expression for NRG1-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NRG1-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for NRG1-IT3 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for NRG1-IT3 Gene:

Hs.147060
genes like me logo Genes that share expression patterns with NRG1-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NRG1-IT3 Gene

Orthologs for NRG1-IT3 Gene

Evolution for NRG1-IT3 Gene

ENSEMBL:
Gene Tree for NRG1-IT3 (if available)
TreeFam:
Gene Tree for NRG1-IT3 (if available)

No data available for Orthologs for NRG1-IT3 Gene

Paralogs for NRG1-IT3 Gene

No data available for Paralogs for NRG1-IT3 Gene

Variants for NRG1-IT3 Gene

Sequence variations from dbSNP and Humsavar for NRG1-IT3 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10086840 -- 32,441,093(+) GCTTT(C/T)CAGTT intron-variant
rs111362939 -- 32,439,757(+) CTAAA(A/T)AATCG intron-variant, upstream-variant-2KB
rs112861499 -- 32,439,532(+) GAACA(C/T)TGTCA intron-variant, upstream-variant-2KB
rs11306096 -- 32,439,772(+) AGTGA(-/T)TTTTT intron-variant, upstream-variant-2KB
rs113413577 -- 32,439,725(+) ATCTA(C/G)CCTAG intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NRG1-IT3 Gene

Variant ID Type Subtype PubMed ID
esv3616810 CNV gain 21293372
esv3576537 CNV gain 25503493

Relevant External Links for NRG1-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG1-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NRG1-IT3 Gene

Disorders for NRG1-IT3 Gene

Relevant External Links for NRG1-IT3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NRG1-IT3

No disorders were found for NRG1-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG1-IT3 Gene

Publications for NRG1-IT3 Gene

No publications were found for NRG1-IT3 Gene.

Products for NRG1-IT3 Gene

Sources for NRG1-IT3 Gene

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