Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NRG1-IT1 Gene

Subcategory (RNA class) for NRG1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NRG1-IT1 Gene

  • NRG1 Intronic Transcript 1 2 3 5
  • NRG1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for NRG1-IT1 Gene

Previous GeneCards Identifiers for NRG1-IT1 Gene

  • GC08P031884

Summaries for NRG1-IT1 Gene

GeneCards Summary for NRG1-IT1 Gene

NRG1-IT1 (NRG1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRG1-IT1 Gene

Genomics for NRG1-IT1 Gene

Regulatory Elements for NRG1-IT1 Gene

Enhancers for NRG1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F032004 0.3 FANTOM5 0.3 -21.3 -21262 0.4 NRG1 NRG1-IT1 GC08P031977
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NRG1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NRG1-IT1 Gene

Chromosome:
8
Start:
32,025,736 bp from pter
End:
32,139,477 bp from pter
Size:
113,742 bases
Orientation:
Plus strand

Genomic View for NRG1-IT1 Gene

Genes around NRG1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRG1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRG1-IT1 Gene

Proteins for NRG1-IT1 Gene

Post-translational modifications for NRG1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG1-IT1 Gene

Domains & Families for NRG1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NRG1-IT1 Gene

Function for NRG1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG1-IT1 Gene

Localization for NRG1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NRG1-IT1 Gene

Pathways & Interactions for NRG1-IT1 Gene

SuperPathways for NRG1-IT1 Gene

No Data Available

Interacting Proteins for NRG1-IT1 Gene

Gene Ontology (GO) - Biological Process for NRG1-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NRG1-IT1 Gene

Transcripts for NRG1-IT1 Gene

mRNA/cDNA for NRG1-IT1 Gene

(1) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NRG1-IT1 Gene

NRG1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NRG1-IT1 Gene

No ASD Table

Relevant External Links for NRG1-IT1 Gene

GeneLoc Exon Structure for
NRG1-IT1
ECgene alternative splicing isoforms for
NRG1-IT1

Expression for NRG1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NRG1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for NRG1-IT1 Gene

This gene is overexpressed in Testis (x50.6).

SOURCE GeneReport for Unigene cluster for NRG1-IT1 Gene:

Hs.97362
genes like me logo Genes that share expression patterns with NRG1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NRG1-IT1 Gene

Orthologs for NRG1-IT1 Gene

Evolution for NRG1-IT1 Gene

ENSEMBL:
Gene Tree for NRG1-IT1 (if available)
TreeFam:
Gene Tree for NRG1-IT1 (if available)

No data available for Orthologs for NRG1-IT1 Gene

Paralogs for NRG1-IT1 Gene

No data available for Paralogs for NRG1-IT1 Gene

Variants for NRG1-IT1 Gene

Sequence variations from dbSNP and Humsavar for NRG1-IT1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10081436 -- 32,128,728(+) TTTTT(A/T)AAAAA intron-variant
rs10086290 -- 32,074,731(+) GGAAA(C/T)AGCAA intron-variant
rs10087434 -- 32,125,551(+) TACCA(C/T)GAAAA intron-variant
rs10087469 -- 32,069,783(+) TCAGT(C/T)CACCC intron-variant
rs10089149 -- 32,071,407(+) ACACG(A/G)TCTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NRG1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3616806 CNV loss 21293372
esv3616807 CNV loss 21293372
nsv1117817 CNV deletion 24896259
nsv465632 CNV gain 19166990
nsv470207 CNV gain 18288195
nsv474487 CNV novel sequence insertion 20440878
nsv528531 CNV loss 19592680
nsv610880 CNV gain 21841781
nsv831282 CNV gain 17160897

Relevant External Links for NRG1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NRG1-IT1 Gene

Disorders for NRG1-IT1 Gene

Relevant External Links for NRG1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NRG1-IT1

No disorders were found for NRG1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG1-IT1 Gene

Publications for NRG1-IT1 Gene

No publications were found for NRG1-IT1 Gene.

Products for NRG1-IT1 Gene

Sources for NRG1-IT1 Gene

Content
Loading form....