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Aliases for NREP-AS1 Gene

Subcategory (RNA class) for NREP-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NREP-AS1 Gene

  • NREP Antisense RNA 1 2 3 5
  • NREP Antisense RNA 1 (Non-Protein Coding) 2 3
  • CTD-2192A1.1 3

External Ids for NREP-AS1 Gene

Previous GeneCards Identifiers for NREP-AS1 Gene

  • GC05P111249

Summaries for NREP-AS1 Gene

GeneCards Summary for NREP-AS1 Gene

NREP-AS1 (NREP Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NREP-AS1 Gene

Genomics for NREP-AS1 Gene

Regulatory Elements for NREP-AS1 Gene

Enhancers for NREP-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G111983 1.2 Ensembl ENCODE dbSUPER 9.9 +71.8 71826 1.4 MTA2 BHLHE40 JUNB EBF1 TBX21 RAD21 RELA JUND EED IKZF1 NREP-AS1 ENSG00000272389 EPB41L4A-AS1 NREP
GH05G112006 1.1 FANTOM5 Ensembl dbSUPER 9.6 +94.5 94500 0.4 JUND JUN JUNB FOS NREP-AS1 STARD4 NREP PIR59149
GH05G112004 1 ENCODE dbSUPER 9.6 +92.7 92712 2.0 EBF1 ZNF316 CBX5 EED FOS ETV6 RELB IKZF2 CREM MAFK NREP-AS1 NREP PIR59149
GH05G111942 0.7 dbSUPER 10.6 +30.5 30452 1.9 CTCF CEBPG RAD21 SMC3 RCOR1 ZNF654 ZNF10 NR2F1 CEBPB TRIM22 NREP-AS1 STARD4 NREP
GH05G111935 0.5 dbSUPER 10.5 +24.3 24343 3.0 HLF MNT ATF2 NREP NREP-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NREP-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NREP-AS1 Gene

Chromosome:
5
Start:
111,912,508 bp from pter
End:
112,017,309 bp from pter
Size:
104,802 bases
Orientation:
Plus strand

Genomic View for NREP-AS1 Gene

Genes around NREP-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NREP-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NREP-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NREP-AS1 Gene

Proteins for NREP-AS1 Gene

Post-translational modifications for NREP-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NREP-AS1 Gene

Domains & Families for NREP-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NREP-AS1 Gene

Function for NREP-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NREP-AS1 Gene

Localization for NREP-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NREP-AS1 Gene

Pathways & Interactions for NREP-AS1 Gene

SuperPathways for NREP-AS1 Gene

No Data Available

Interacting Proteins for NREP-AS1 Gene

Gene Ontology (GO) - Biological Process for NREP-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NREP-AS1 Gene

Drugs & Compounds for NREP-AS1 Gene

No Compound Related Data Available

Transcripts for NREP-AS1 Gene

mRNA/cDNA for NREP-AS1 Gene

(1) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NREP-AS1 Gene

NREP antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NREP-AS1 Gene

No ASD Table

Relevant External Links for NREP-AS1 Gene

GeneLoc Exon Structure for
NREP-AS1
ECgene alternative splicing isoforms for
NREP-AS1

Expression for NREP-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NREP-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NREP-AS1 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for NREP-AS1 Gene:

Hs.147716
genes like me logo Genes that share expression patterns with NREP-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NREP-AS1 Gene

Orthologs for NREP-AS1 Gene

Evolution for NREP-AS1 Gene

ENSEMBL:
Gene Tree for NREP-AS1 (if available)
TreeFam:
Gene Tree for NREP-AS1 (if available)

No data available for Orthologs for NREP-AS1 Gene

Paralogs for NREP-AS1 Gene

No data available for Paralogs for NREP-AS1 Gene

Variants for NREP-AS1 Gene

Sequence variations from dbSNP and Humsavar for NREP-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000053394 -- 111,986,559(+) CTAGA(G/T)CCCTG intron-variant
rs1000062076 -- 111,914,990(+) TTCAT(C/T)GTAGG intron-variant
rs1000071135 -- 112,009,398(+) ATATT(A/C)AATTA intron-variant
rs1000091534 -- 111,917,364(+) TGAGG(C/T)CAGCA intron-variant
rs1000135139 -- 111,945,901(+) TGGCT(C/T)ACCTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NREP-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671791 CNV deletion 23128226
esv2763484 CNV loss 21179565
esv3606278 CNV gain 21293372
esv3606280 CNV loss 21293372
esv3606281 CNV gain 21293372
esv3606282 CNV loss 21293372
nsv599367 CNV gain 21841781

Relevant External Links for NREP-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NREP-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NREP-AS1 Gene

Disorders for NREP-AS1 Gene

Relevant External Links for NREP-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NREP-AS1

No disorders were found for NREP-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NREP-AS1 Gene

Publications for NREP-AS1 Gene

No publications were found for NREP-AS1 Gene.

Products for NREP-AS1 Gene

Sources for NREP-AS1 Gene

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