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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

NRARP Gene

protein-coding GIFtS: 44
GCID: GC09M140194

NOTCH-regulated ankyrin repeat protein

Explore 5 diseases affiliated with
NRARP via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
NOTCH-Regulated Ankyrin Repeat Protein¹ ²
MGC61598¹
Notch-Regulated Ankyrin Repeat-Containing Protein²

External Ids:	HGNC: 33843¹	Entrez Gene: 441478²	Ensembl: ENSG00000198435⁷	UniProtKB: Q7Z6K4³

Export aliases for NRARP gene to outside databases

Previous GC identifers: GC09M139315 GC09M109653

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: NRARP_HUMAN, Q7Z6K4

Function: May play a role in the formation of somites (By similarity)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000009.11 NC_018920.1 NT_024000.16

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the NRARP gene promoter:
POU2F2 (Oct-2.1) Oct-B1 oct-B2 oct-B3 POU2F2 POU2F1 POU2F1a PPAR-gamma2 POU2F2B
Other transcription factors

SwitchGear Promoter luciferase reporter plasmid: NRARP promoter sequence

Search SABiosciences Chromatin IP Primers for NRARP

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NRARP

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q34.3 Ensembl cytogenetic band: 9q34.3 HGNC cytogenetic band: 9q34.3

NRARP Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NRARP gene location

GeneLoc information about chromosome 9 GeneLoc Exon Structure

GeneLoc location for GC09M140194: view genomic region (about GC identifiers)

Start:	140,194,083 bp from pter	End:	140,196,703 bp from pter
Size:	2,621 bases	Orientation:	minus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NRARP_HUMAN, Q7Z6K4 (See protein sequence)

Recommended Name: Notch-regulated ankyrin repeat-containing protein

Size: 114 amino acids; 12492 Da

Secondary accessions: B8A4K5

Explore the universe of human proteins at neXtProt for NRARP: NX_Q7Z6K4

NRARP Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins: NP_001004354.1

ENSEMBL proteins:

ENSP00000349041

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	Uscn ELISAs and CLIAs for NRARP

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NRARP for domains About GeneDecksing

2 InterPro domains/families:

IPR020683 Ankyrin_rpt-contain_dom

IPR002110 Ankyrin_rpt

Graphical View of Domain Structure for InterPro Entry Q7Z6K4

ProtoNet protein and cluster: Q7Z6K4

UniProtKB/Swiss-Prot: NRARP_HUMAN, Q7Z6K4

Similarity: Belongs to the NRARP family

Similarity: Contains 2 ANK repeats

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: NRARP_HUMAN, Q7Z6K4

Function: May play a role in the formation of somites (By similarity)

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In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NRARP

Animal Models:
Mouse knock-outs for NRARP: Nrarp^tm1Vlcg Nrarp^tm1Grid
10 MGI mutant phenotypes (inferred from 3 alleles) (MGI details for Nrarp):

cardiovascular system	craniofacial	embryogenesis	growth/size	hematopoietic system
limbs/digits/tail	nervous system	reproductive system	skeleton	vision/eye

NRARP for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for NRARP

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

2 Interacting proteins for NRARP (Q7Z6K4³ ENSP00000349041⁴) via UniProtKB, MINT, STRING, and/or I2D

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
IKBKG	Q9Y6K9³, ENSP00000358622⁴	I2D: score=1 STRING: ENSP00000358622
LEF1	Q9UJU2³	I2D: score=1

About this table

Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0000122	negative regulation of transcription from RNA polymerase II promoter	IEA	--
GO:0001569	patterning of blood vessels	IEA	--
GO:0001938	positive regulation of endothelial cell proliferation	IEA	--
GO:0002040	sprouting angiogenesis	--	--
GO:0002043	blood vessel endothelial cell proliferation involved in sprouting angiogenesis	IEA	--

NRARP for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NRARP
Search CenterWatch for drugs/clinical trials and news about NRARP

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
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Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for NRARP gene:

NM_001004354.2

Unigene Cluster for NRARP:

NOTCH-regulated ankyrin repeat protein

Hs.732282 [show with all ESTs]

Unigene Representative Sequence: NM_001004354

1 Ensembl transcript including schematic representation, and UCSC links where relevant:

ENST00000356628(uc004cmo.2)

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		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NRARP
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		hsa-miR-520e hsa-miR-1224-3p hsa-miR-15a hsa-miR-128 hsa-miR-632 hsa-miR-629 hsa-miR-3613-3p hsa-miR-510

		SwitchGear 3'UTR luciferase reporter plasmid: NRARP 3' UTR sequence

Inhib. RNA Products:		Browse for Gene Knock-down Tools from EMD Millipore
		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NRARP (see all 7) OriGene shRNA RFP: NRARP OriGene siRNA: NRARP
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		DNA2.0 Custom Codon Optimized Gene Synthesis Service for NRARP
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Additional cDNA sequence: BC053618.1

1 DOTS entry:

DT.314358

24/92 AceView cDNA sequences (see all 92):

BQ024041 CB132749 BM697456 BE301656 AA369905 BX089916 AI888714 AI125449

AI342165 BM698688 AA534872 AA593735 AI358021 AW078532 CK819901 AI814819

AI125453 NM_001004354 BE018176 BC053618 AI300474 AA588354 BM850698 Z41279

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

NRARP expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GAAGTGCTGC

About this image

NRARP expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Paraxial Mesoderm

Paraxial Mesoderm Cells

Selective marker (cell-identifying gene)

Mesoderm

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See NRARP Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NRARP

SOURCE GeneReport for Unigene cluster: Hs.732282

SABiosciences Expression via Pathway-Focused PCR Array including NRARP:

Notch Signaling Targets in human mouse rat

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In Situ
Assay Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NRARP

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of chordates.

Orthologs for NRARP gene from 3/11 species (see all 11) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Details
mouse (Mus musculus)	Mammalia	Nrarp^{1 , 5}	Notch-regulated ankyrin repeat protein^{1, 5}	93.86(n)¹ 100(a)¹	2 (17.05 cM)⁵ 67122¹ NM_025980.2¹ NP_080256.2¹ 25180758⁵
chicken (Gallus gallus)	Aves	NRARP¹	NOTCH-regulated ankyrin repeat protein	88.89(n) 88.6(a)	431400 XM_428951.3 XP_428951.2
zebrafish (Danio rerio)	Actinopterygii	nrarpa¹	notch-regulated ankyrin repeat protein a	84.52(n) 90.18(a)	353224 NM_181495.3 NP_852472.1

ENSEMBL Gene Tree for NRARP (if available)
TreeFam Gene Tree for NRARP (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

Paralogs for NRARP gene

PPP1R13B² PPP1R16B² PPP1R27² TP53BP2² PPP1R12A² PPP1R16A² PPP1R12B² PPP1R12C²

PPP1R13L²

18/31 SIMAP similar genes for NRARP using alignment to 1 protein entry: NRARP_HUMAN(see all similar genes):

TP53BP2 PPP1R12C ANKRD44 LOC91526 PPP1R27 ANKK1

ANKMY2 ANKRD28 TRPA1 ANK3 ANKRD50 ANKDD1B

PPP1R12B ANKDD1A ANK2 ANKRD31 ANKRD39 OSBPL1A

NRARP for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 9 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs184700679^1,2		--	140193588(+)	`GGCCCC/TGATGC`	1	--	int¹		0	--	--	--	--
rs4075316^1,2	C,F,A,	--	140193692(-)	`CTCCTG/AGCAGG`	1	--	int¹		1		WA	118
rs4075315^1,2	C,F,A,	--	140193741(-)	`GCACAG/AAAAGT`	1	--	int¹		1		WA	118
rs76630687^1,2	F,	--	140193986(+)	`AATACA/CAGCCA`	1	--	int¹		1		WA	118
rs56015019^1,2	C,	--	140194007(+)	`ACCCAG/ACACCC`	1	--	int¹		2		WA	120
rs7032003^1,2	C,F,H,	--	140194020(+)	`AAACCG/ATGTCA`	1	--	int¹		20		NS EA NA WA CSA	2344
rs186843781^1,2		--	140194165(+)	`AATATC/TGTACA`	1	--	ut3¹		0	--	--	--	--
rs191726471^1,2		--	140194334(+)	`AATCTA/GTGCCT`	1	--	ut3¹		0	--	--	--	--
rs116113799^1,2	F,	--	140194412(+)	`AGCGAC/GGGAGG`	1	--	ut3¹		1		WA	118
rs145666579^1,2		--	140194560(+)	`CTTTTA/GTTTCT`	1	--	ut3¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for NRARP (140194083 - 140196703 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for NRARP
1 CNV: 5415

SABiosciences Cancer Mutation PCR Assays

QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NRARP

DNA2.0 Custom Variant and Variant Library Synthesis for NRARP

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NRARP for disorders About GeneDecksing

5 diseases for NRARP: About MalaCards

intrahepatic cholangiocarcinoma inflammatory breast carcinoma breast carcinoma cholangiocarcinoma

carcinoma

1 disease from the University of Copenhagen DISEASES database for NRARP:

Inflammatory breast carcinoma

Export disorders for NRARP gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for NRARP gene integrated from 9 sources:
(articles sorted by number of sources associating them with NRARP)

Utopia: connect your pdf to the dynamic
world of online information

Expanding the substantial interactome of NEMO using p rotein microarrays. (PubMed id 20098747)¹ Fenner B.J....Prehn J.H. (2010)
Nrarp coordinates endothelial Notch and Wnt signaling to control vessel density in angiogenesis. (PubMed id 19154719)¹ Phng L.K....Gerhardt H. (2009)
hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PubMed id 17207965)¹ Lamesch P.... Vidal M. (2007)
Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PubMed id 16712791)¹ Wang A.G....Kim N.S. (2006)
DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)² Humphray S.J.... Dunham I. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)² Gerhard D.S....Malek J. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 441478	HGNC: 33843	AceView: MGC61598	Ensembl:ENSG00000198435	euGenes: HUgn441478
ECgene: NRARP	H-InvDB: NRARP

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for NRARP	Pharmacogenomics, SNPs, Pathways

Intellectual Property for NRARP gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for NRARP gene:
Search GeneIP for patents involving NRARP

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section


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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NRARP

GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
GIFtS Group

The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

The GeneCards Human Gene Database

Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

Hot genes Disease genes NRARP gene at Home site.

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NRARP Gene

NOTCH-regulated ankyrin repeat protein

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Export list of displayed genes

NRARP Gene

NOTCH-regulated ankyrin repeat protein

Aliasesfor NRARP gene

Summariesfor NRARP gene

Genomic Viewsfor NRARP gene

Proteinsfor NRARP gene

Protein Domains /Familiesfor NRARP gene

Functionfor NRARP gene

Pathways & Interactionsfor NRARP gene

Drugs & Compoundsfor NRARP gene

Transcriptsfor NRARP gene

Expression for NRARP gene

Orthologsfor NRARP gene

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External Searches for NRARP gene

Genome Databases showing NRARP gene

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Specialized Databases showing NRARP gene

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Aliases
for NRARP gene

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for NRARP gene

Genomic Views
for NRARP gene

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for NRARP gene

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Families
for NRARP gene

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for NRARP gene

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for NRARP gene

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for NRARP gene

Transcripts
for NRARP gene

Expression
for NRARP gene

Orthologs
for NRARP gene

Paralogs
for NRARP gene

Genomic Variants
for NRARP gene

Disorders / Diseases
for NRARP gene

Publications
for NRARP gene

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for NRARP gene

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for NRARP gene