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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

NR4A1 Gene

protein-coding GIFtS: 65
GCID: GC12P052416

nuclear receptor subfamily 4, group A, member 1

(Previous symbols: HMR, GFRP1)

Explore 53 diseases affiliated with
NR4A1 via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Aliases
Nuclear Receptor Subfamily 4, Group A, Member 1¹ ²		Testicular Receptor 3² ³
GFRP1¹ ² ³ ⁵		ST-59² ³
HMR¹ ² ³ ⁵		NP10² ⁵
N10¹ ²		Growth Factor-Inducible Nuclear Protein N10²
NAK-1¹ ²		Hormone Receptor²
NGFIB¹ ²		Nerve Growth Factor IB Nuclear Receptor Variant 1²
NUR77¹ ²		Nuclear Receptor Subfamily 4 Group A Member 1²
TR3¹ ²		Steroid Receptor TR3²
Early Response Protein NAK1² ³		TR3 Orphan Receptor²
Nuclear Hormone Receptor NUR/77² ³		NAK1³
Orphan Nuclear Receptor HMR² ³		Nur77³
Orphan Nuclear Receptor TR3² ³

External Ids:	HGNC: 7980¹	Entrez Gene: 3164²	Ensembl: ENSG00000123358⁷	OMIM: 139139⁵	UniProtKB: P22736³

Export aliases for NR4A1 gene to outside databases

Previous GC identifers: GC12M052494 GC12P052474 GC12P052154 GC12P050723 GC12P050717 GC12P052432 GC12P049478

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NR4A1:

This gene encodes a member of the steroid-thyroid hormone-retinoid receptor superfamily. Expression is induced by

phytohemagglutinin in human lymphocytes and by serum stimulation of arrested fibroblasts. The encoded protein acts as

a nuclear transcription factor. Translocation of the protein from the nucleus to mitochondria induces apoptosis.

Multiple transcript variants encoding different isoforms have been found for this gene. (provided by RefSeq, Jan 2011)

UniProtKB/Swiss-Prot: NR4A1_HUMAN, P22736

Function: Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes

during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit

NF-kappa-B transactivation of IL2

Gene Wiki entry for NR4A1 (Nerve Growth factor IB)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000012.11 NC_018923.1 NT_029419.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the NR4A1 gene promoter:
SRF CREB Max1 deltaCREB c-Myc
Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): NR4A1 promoter sequence

Search SABiosciences Chromatin IP Primers for NR4A1

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NR4A1

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q13 Ensembl cytogenetic band: 12q13.13 HGNC cytogenetic band: 12q13

NR4A1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NR4A1 gene location

GeneLoc information about chromosome 12 GeneLoc Exon Structure

GeneLoc location for GC12P052416: view genomic region (about GC identifiers)

Start:	52,416,616 bp from pter	End:	52,453,291 bp from pter
Size:	36,676 bases	Orientation:	plus strand

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NR4A1_HUMAN, P22736 (See protein sequence)

Recommended Name: Nuclear receptor subfamily 4 group A member 1

Size: 598 amino acids; 64463 Da

Subunit: Binds DNA as a monomer (By similarity). Interacts with GADD45GIP1

Subcellular location: Nucleus

3 PDB 3D structures from and Proteopedia for NR4A1:

2QW4 (3D)

3V3E (3D)

3V3Q (3D)

Secondary accessions: B4DML7

Alternative splicing: 2 isoforms: P22736-1 P22736-2 (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for NR4A1: NX_P22736

Post-translational modifications:

Phosphorylated at Ser-351 by RPS6KA1 and RPS6KA3 in response to mitogenic or stress stimuli¹

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_P22736

NR4A1 Protein expression data from MOPED and PaxDb: About this image

REFSEQ proteins (3 alternative transcripts):

NP_001189162.1 NP_002126.2 NP_775180.1

ENSEMBL proteins:

ENSP00000456633 ENSP00000457070 ENSP00000456776 ENSP00000440864 ENSP00000449539

ENSP00000449858 ENSP00000378301 ENSP00000449587 ENSP00000455399 ENSP00000455767

ENSP00000353427 ENSP00000243050 ENSP00000378302

Reactome Protein details: P22736
Human Recombinant Protein Products:

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	Novus Biologicals NR4A1 Proteins Novus Biologicals NR4A1 Lysates
	Browse Sino Biological Recombinant Proteins
	Browse ProSpec Recombinant Proteins
	Uscn Proteins for NR4A1

Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005634	nucleus	ISS	--
GO:0005654	nucleoplasm	TAS	--
GO:0005667	transcription factor complex	IEA	--

NR4A1 for ontologies About GeneDecksing

NR4A1 Antibody Products:

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	GenScript Custom Assay Services for NR4A1
	Browse Enzo Life Sciences for kits & assays
	Uscn ELISAs and CLIAs for NR4A1

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NR4A1 for domains About GeneDecksing

5/7 InterPro domains/families (see all 7):

IPR013088 Znf_NHR/GATA

IPR008946 Nucl_hormone_rcpt_ligand-bd

IPR000536 Nucl_hrmn_rcpt_lig-bd_core

IPR001628 Znf_hrmn_rcpt

IPR001723 Str_hrmn_rcpt

Graphical View of Domain Structure for InterPro Entry P22736

ProtoNet protein and cluster: P22736

3 Blocks protein families:

IPB001723 Steroid hormone receptor signature

IPB003070 Orphan nuclear receptor (4A nuclear receptor) family signature

IPB003071 Orphan nuclear receptor HMR signature

UniProtKB/Swiss-Prot: NR4A1_HUMAN, P22736

Similarity: Belongs to the nuclear hormone receptor family. NR4 subfamily

Similarity: Contains 1 nuclear receptor DNA-binding domain

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: NR4A1_HUMAN, P22736

Function: Orphan nuclear receptor. May act concomitantly with NURR1 in regulating the expression of delayed-early genes

during liver regeneration. Binds the NGFI-B response element (NBRE) 5'-AAAAGGTCA-3' (By similarity). May inhibit

NF-kappa-B transactivation of IL2

Induction: By growth-stimulating agents

Genatlas biochemistry entry for NR4A1:

nuclear receptor subfamily 4,group A,member 1,steroid/thyroid receptor superfamily,likely functionning as a general

coactivation of gene transcription

miRNA Products:		OriGene 3'-UTR Clone (see all 2): NR4A1 Browse MicroRNA Expression Plasmids
		QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NR4A1
		8/14 QIAGEN miScript miRNA Assays for microRNAs that regulate NR4A1 (see all 14):
		hsa-miR-224 hsa-miR-16-2* hsa-miR-520d-5p hsa-miR-4272 hsa-miR-605 hsa-miR-3120-3p hsa-miR-656 hsa-miR-124

		SwitchGear 3'UTR luciferase reporter plasmid: NR4A1 3' UTR sequence

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		OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NR4A1 (see all 7) OriGene shRNA RFP: NR4A1 OriGene siRNA: NR4A1
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Gene Editing
Products:

DNA2.0 Custom Protein Engineering Service for NR4A1

Clone Products:		Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
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		GenScript: all cDNA clones in your preferred vector (see all 3): NR4A1 (NM_002135)
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		Search LifeMap BioReagents cell lines for NR4A1

In Situ Assay
Products:

Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NR4A1

Gene Ontology (GO): 5/9 molecular function terms (GO ID links to tree view) (see all 9): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001077	RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription	IEA	--
GO:0003677	DNA binding	ISS	--
GO:0003707	steroid hormone receptor activity	IEA	--
GO:0004879	ligand-activated sequence-specific DNA binding RNA polymerase II transcription factor activity	IEA	--
GO:0005515	protein binding	IPI	--

NR4A1 for ontologies           About GeneDecksing

Animal Models:
     Mouse knock-out Nr4a1^tm1Jmi for NR4A1
     9 MGI mutant phenotypes (inferred from 1 allele) (MGI details for Nr4a1):

behavior/neurological	endocrine/exocrine gland	growth/size	hematopoietic system	immune system
integument	liver/biliary system	mortality/aging	tumorigenesis

NR4A1 for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways - 5/23 super-pathways (see all 23) About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Signaling by FGFR

8/12 pathways (see all 12)
Signaling by FGFR	1.00	DAP12 signaling	0.83
Downstream signaling of activated FGFR	0.92	Signaling by EGFR in Cancer	0.83
Signaling by FGFR in disease	0.91	DAP12 interactions	0.76
Signaling by ERBB2	0.89	Signaling by PDGF	0.72

PIP3 activates AKT signaling

8/10 pathways (see all 10)
PIP3 activates AKT signaling	1.00	PI3K/AKT activation	0.97
PI3K/AKT Signaling in Cancer	1.00	GAB1 signalosome	0.96
PI3K events in ERBB2 signaling	1.00	Constitutive PI3K/AKT Signaling in Cancer	0.88
PI3K events in ERBB4 signaling	1.00	Signaling by SCF-KIT	0.72

Immune System

	Immune System	1.00			Innate Immune System	0.46
	Adaptive Immune System	0.59

Immune response_Function of MEF2 in T lymphocytes

Immune response_Function of MEF2 in T lymphocytes

1.00

Immune response Function of MEF2 in T lymphocytes

0.90

Signal transduction_Activation of PKC via G-Protein coupled receptor

Signal transduction_Activation of PKC via G-Protein coupled receptor

1.00

Signal transduction Activation of PKC via G-Protein coupled receptor

0.98

Pathway sources
See GeneCards unified pathways
Show all pathways

2 EMD Millipore Pathways for NR4A1

	Immune response Function of MEF2 in T lymphocytes
	Signal transduction Activation of PKC via G-Protein coupled receptor

5 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for NR4A1

	NK1R-mediated Non-Apoptotic PCD
	Nur77-Induced AICD in Macrophage
	Calcium Mediated T-Cell Apoptosis
	Nur77 Signaling in T-Cell
	CRHR Pathway

3 Cell Signaling Technology (CST) Pathways for NR4A1

	Apoptosis and Autophagy
	Lymphocyte Signaling
	PI3K / Akt Signaling

2 GeneGo (Thomson Reuters) Pathways for NR4A1

	Signal transduction Activation of PKC via G-Protein coupled receptor
	Immune response Function of MEF2 in T lymphocytes

5 BioSystems Pathways for NR4A1

	Nuclear Receptors
	MAPK signaling pathway
	Role of Calcineurin-dependent NFAT signaling in lymphocytes
	Glucocorticoid receptor regulatory network
	RXR and RAR heterodimerization with other nuclear receptor

5/33 Reactome Pathways for NR4A1 (see all 33)

	Nuclear Receptor transcription pathway
	Signaling by EGFR in Cancer
	Downstream signal transduction
	Signal Transduction
	Signaling by PDGF

1 Kegg Pathway (Kegg details for NR4A1):

MAPK signaling pathway

NR4A1 for pathways About GeneDecksing

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for NR4A1

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

5/163 Interacting proteins for NR4A1 (P22736^{1, 2, 3} ENSP00000243050⁴) via UniProtKB, MINT, STRING, and/or I2D (see all 163)

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
TP53	P04637²^,³, ENSP00000269305⁴	MINT-4049673 MINT-4049732 MINT-4049598 MINT-4049689 MINT-4049708 MINT-4049650 I2D: score=3 STRING: ENSP00000269305
BCL2	P10415¹^,³, ENSP00000329623⁴	EBI-721550,EBI-77694 I2D: score=4 STRING: ENSP00000329623
ATXN1	P54253²^,³, ENSP00000244769⁴	MINT-2859701 I2D: score=3 STRING: ENSP00000244769
PRDX4	Q13162²^,³, ENSP00000368646⁴	MINT-8264116 I2D: score=2 STRING: ENSP00000368646
BBS10	Q8TAM1²^,³	MINT-8263984 I2D: score=2

About this table

Gene Ontology (GO): 5/19 biological process terms (GO ID links to tree view) (see all 19): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001938	positive regulation of endothelial cell proliferation	IMP	18059339
GO:0002042	cell migration involved in sprouting angiogenesis	IDA	18059339
GO:0006367	transcription initiation from RNA polymerase II promoter	TAS	--
GO:0006915	apoptotic process	--	--
GO:0006917	induction of apoptosis	IEA	--

NR4A1 for ontologies About GeneDecksing

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

NR4A1 for compounds About GeneDecksing

Browse Small Molecules at EMD Millipore

Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for NR4A1
10/55 Novoseek chemical compound relationships for NR4A1 gene (see all 55) About this table

Compound	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
nor 1	92.5	26	10773199 (4), 17096060 (3), 18945812 (2), 15947483 (2) (see all 14)
ru 26752	84	3	8639467 (2)
18-vinylprogesterone	81.5	2	7588320 (1), 8068005 (1)
cd 437	69.8	9	9671482 (4), 16434970 (2), 17150035 (2)
steroid	62.5	45	1922099 (3), 1655735 (1), 7849260 (1), 15128284 (1) (see all 35)
retinoid	56.3	13	12082103 (1), 15494375 (1), 10772826 (1), 7705655 (1) (see all 10)
retinoic acid	48.4	47	14592536 (5), 10772826 (5), 15494375 (4), 9130711 (3) (see all 12)
forskolin	43.8	14	15615861 (3), 16002533 (3), 15128284 (1), 11174853 (1) (see all 6)
spironolactone	42.4	1	8068005 (1)
acth	39.7	20	9322922 (6), 9592111 (3), 10340952 (2), 9496246 (2) (see all 9)

Search CenterWatch for drugs/clinical trials and news about NR4A1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for NR4A1 gene (5 alternative transcripts):

NM_001202233.1 NM_002135.4 NM_173157.2 NM_001202234.1 NM_173158.1

Unigene Clusters for NR4A1:

Nuclear receptor subfamily 4, group A, member 1

Hs.524430 [show with all ESTs], Hs.670088 [show with all ESTs]

Unigene Representative Sequences: AK131566, D85245

18/23 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 23):

ENST00000548977 ENST00000546842 ENST00000553200 ENST00000545748(uc010sno.2)

ENST00000550082 ENST00000549102 ENST00000478250(uc001rzr.2 uc009zmb.2)

ENST00000547206 ENST00000550763 ENST00000394824(uc009zmc.3) ENST00000550525

ENST00000548232 ENST00000562373 ENST00000548733 ENST00000550557 ENST00000564201

ENST00000550339 ENST00000567890

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		8/14 QIAGEN miScript miRNA Assays for microRNAs that regulate NR4A1 (see all 14):
		hsa-miR-224 hsa-miR-16-2* hsa-miR-520d-5p hsa-miR-4272 hsa-miR-605 hsa-miR-3120-3p hsa-miR-656 hsa-miR-124

		SwitchGear 3'UTR luciferase reporter plasmid: NR4A1 3' UTR sequence

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		GenScript: all cDNA clones in your preferred vector (see all 3): NR4A1 (NM_002135)
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		Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NR4A1

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		QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NR4A1
		QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NR4A1

Additional cDNA sequence:

AK314437.1 D85245.1

24/29 DOTS entries (see all 29):

DT.100835625 DT.95211685 DT.99933453 DT.455683 DT.100677763 DT.95197080 DT.86851887 DT.95211694

DT.121120228 DT.95211671 DT.121120236 DT.121120215 DT.92443432 DT.91754839 DT.92017879 DT.100835627

DT.100835629 DT.121120237 DT.97762198 DT.97764057 DT.97819747 DT.100835623 DT.100835626 DT.100835628

24/423 AceView cDNA sequences (see all 423):

AL047948 AL047492 AI362414 BX280917 BQ893911 BF725615 AL047238 BQ722446

AW328183 CA405635 BQ636118 BQ217551 T28725 BF437220 CD245324 NM_173157

BQ716170 NM_002135 BQ898376 CB270633 BM998346 BQ772051 BQ004741 BE326874

GeneLoc Exon Structure

5/13 Alternative Splicing Database (ASD) splice patterns (SP) for NR4A1 (see all 13) About this scheme

ExUns:	1	^	2	^	3a	·	3b	^	4a	·	4b	·	4c	^	5a	·	5b	·	5c	^	6a	·	6b	·	6c	^	7a	·	7b	^	8a	·	8b	^	9	^	10	^	11a	·	11b	·	11c	^	12a	·	12b	^	13a	·	13b	·
SP1:																																							-		-
SP2:															-		-		-		-		-		-		-		-		-		-						-		-
SP3:																																							-		-				-		-
SP4:															-		-
SP5:															-

ExUns:	13c
SP1:
SP2:
SP3:
SP4:
SP5:

ECgene alternative splicing isoforms for NR4A1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

NR4A1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAAAAATACA

About this image

NR4A1 expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

2 LifeMap In Vivo Development Anatomical Compartments/Cells

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Ovary

Antral Follicle

Mature Granulosa Cells

Ovary

Adipose

Interscapular Brown Adipose Depot

Adipose

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

See NR4A1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NR4A1

SOURCE GeneReport for Unigene clusters: Hs.524430 Hs.670088

UniProtKB/Swiss-Prot: NR4A1_HUMAN, P22736

Tissue specificity: Fetal muscle and adult liver, brain and thyroid

SABiosciences Expression via Pathway-Focused PCR Arrays including NR4A1:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for NR4A1 gene from 5/17 species (see all 17) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
lizard (Anolis carolinensis)	Reptilia	NR4A1⁶	--	69(a)	1 ↔ 1	2(92812439-92823211)
African clawed frog (Xenopus laevis)	Amphibia	BC056025.1²	--	76.87(n)		BC056025.1
zebrafish (Danio rerio)	Actinopterygii	nr4a1¹	nuclear receptor subfamily 4, group A, member 1	62.65(n) 61.77(a)		431720 NM_001002173.1 NP_001002173.1
fruit fly (Drosophila melanogaster)	Insecta	Hr38³	epidermal differentiation ligand-dependent nuclear receptor less	64(a)		--
worm (Caenorhabditis elegans)	Secernentea	nhr-6¹	Protein NHR-6	45.67(n) 36.78(a)		175462 NM_065330.4 NP_497731.1

ENSEMBL Gene Tree for NR4A1 (if available)
TreeFam Gene Tree for NR4A1 (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
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Paralogs for NR4A1 gene

VDR² NR4A3² NR1I2² RARG² NR1I3² THRB² RARA² NR1H2²

NR4A2² NR1H4² RARB² THRA² NR1H3²

18/24 SIMAP similar genes for NR4A1 using alignment to 11 protein entries: NR4A1_HUMAN (see all proteins) (see all similar genes):

DKFZp451G125 HNF4G VDR ESR1 DKFZp779O0162 HNF4alpha

NR1I3 NR4A2 NR3C2 NR5A1 NR4A3 RXRB

NR2B1 RXRA NR1B3 RARG NR1B2 NR2B3

NR4A1 for paralogs About GeneDecksing

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
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SNP ID	Valid	Clinical significance	Chr 12 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs186716977^1,2		--	52414719(+)	`TGGTGA/GGGAGC`	1	--	us2k¹		0	--	--	--	--
rs2603747^1,2		--	52414782(+)	`ACCATT/CGGGAG`	1	--	us2k¹		2		CSA WA	120
rs190541030^1,2		--	52414829(+)	`CCTTCC/TTCAGC`	1	--	us2k¹		0	--	--	--	--
rs140512933^1,2		--	52414904(+)	`AGACAA/CCCTCC`	1	--	us2k¹		0	--	--	--	--
rs182429093^1,2		--	52415422(+)	`CTGCTC/TCCCTA`	1	--	us2k¹		0	--	--	--	--
rs144249686^1,2		--	52415447(+)	`CTTTAC/GTGACT`	1	--	us2k¹		0	--	--	--	--
rs11169984^1,2	A	--	52415753(+)	`TTTGGG/TTTTTG`	1	--	us2k¹		0	--	--	--	--
rs7309547^1,2	C,F,A,	--	52415758(+)	`TTTTTG/TAAACA`	1	--	us2k¹		5		NA WA EA	362
rs61914047^1,2		--	52415759(+)	`TTTTGC/AAACAG`	1	--	us2k¹		1		NA	2
rs145326798^1,2		--	52416047(+)	`CTCAA-/AAAAAG AAAAA`	1	--	us2k¹		0	--	--	--	--

HapMap Linkage Disequilibrium report for NR4A1 (52416616 - 52453291 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NR4A1: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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NR4A1 for disorders           About GeneDecksing

OMIM gene information: 139139    OMIM disorders: --

20/53 diseases for NR4A1 (see all 53):    About MalaCards

maturity-onset diabetes of the young thyroiditis tardive dyskinesia pseudohypoaldosteronism

burkitt's lymphoma staphyloenterotoxemia impetigo atopic dermatitis

brain injury acute lymphoblastic leukemia rheumatoid arthritis lymphoblastic leukemia

acute myeloid leukemia myeloid leukemia cutaneous t cell lymphoma parkinson's disease

renal cell carcinoma choriocarcinoma bipolar disorder stomach cancer

2 diseases from the University of Copenhagen DISEASES database for NR4A1:

Staphyloenterotoxemia Impetigo

10/24 Novoseek disease relationships for NR4A1 gene (see all 24) About this table

Disease	-log (P-Val)	Hits	PubMed IDs for Articles with Shared Sentences (# sentences)
pseudohypoaldosteronism	67	2	9141514 (1), 12788847 (1)
mammary tumor	39	3	1648951 (1), 14500761 (1), 8070376 (1)
carcinoma adrenocortical	29.1	1	15292355 (1)
leukemogenesis	22.7	1	19148494 (1)
gastric cancer	16.1	10	12376465 (4), 14592536 (2), 15601544 (2), 15494375 (1) (see all 5)
choriocarcinoma	6.34	1	8119938 (1)
leukemia t-cell	3.86	1	10772826 (1)
parkinson disease	2.31	4	20096738 (1), 15956351 (1), 19635563 (1)
burkitt lymphoma	1.13	1	7589118 (1)
ischemia	0	2	14715474 (1), 8964794 (1)

Human Genome Epidemiology (HuGE) Navigator: NR4A1 (4 documents)

Export disorders for NR4A1 gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
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PubMed articles for NR4A1 gene, integrated from 9 sources (see all 382):
(articles sorted by number of sources associating them with NR4A1)

Utopia: connect your pdf to the dynamic
world of online information

Isolation and characterization of human TR3 receptor: a member of steroid receptor superfamily. (PubMed id 2626032)^{1, 2, 3} Chang C.... Chang Y. (1989)
Negative cross-talk between the human orphan nuclear receptor Nur77/NAK-1/TR3 and nuclear factor-kappaB. (PubMed id 15466594)^{1, 2, 9} Harant H. and Lindley I.J. (2004)
A human early response gene homologous to murine nur77 and rat NGFI- B, and related to the nuclear receptor superfamily. (PubMed id 2283997)^{1, 2, 9} Nakai A.... Degroot L.J. (1990)
CR6-interacting factor 1 interacts with orphan nuclear receptor Nur77 and inhibits its transactivation. (PubMed id 15459248)^{1, 2} Park K.C....Shong M. (2005)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)^{1, 2} Ota T.... Sugano S. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{1, 2} Gerhard D.S....Malek J. (2004)
Phorbol ester, forskolin, and serum induction of a human colon nuclear hormone receptor gene related to the NUR 77/NGFI-B genes. (PubMed id 1651101)^{1, 2} Bondy G.P. (1991)
Mitogenic effect of orphan receptor TR3 and its regulation by MEKK1 in lung cancer cells. (PubMed id 14612408)^{1, 9} Kolluri S.K....Zhang X.K. (2003)
Dual roles of Nur77 in selective regulation of apoptosis and cell cycle by TPA and ATRA in gastric cancer cells. (PubMed id 12376465)^{1, 9} Wu Q....Su W.J. (2002)
Regulation of Nur77 nuclear export by c-Jun N-terminal kinase and Akt. (PubMed id 16434970)^{1, 9} Han Y.H....Zhang X.K. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Disorders
Free Text

Query String		PubMed OMIM NCBI Bookshelf
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(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 3164	HGNC: 7980	AceView: NR4A1	Ensembl:ENSG00000123358	euGenes: HUgn3164
ECgene: NR4A1	Kegg: 3164	H-InvDB: NR4A1

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
PharmGKB entry for NR4A1	Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for NR4A1	Genetics and Cytogenetics in Oncology and Haematology

Intellectual Property for NR4A1 gene
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Patent Information for NR4A1 gene:
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GeneCards and IP:
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NR4A1 Gene

nuclear receptor subfamily 4, group A, member 1

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NR4A1 (Gene Symbol)
Nuclear Receptor Subfamily 4, Group A, Member 1
GFRP1
HMR
N10
NAK-1
NGFIB
NUR77
TR3
Early Response Protein NAK1
Nuclear Hormone Receptor NUR/77
Orphan Nuclear Receptor HMR
Orphan Nuclear Receptor TR3
Testicular Receptor 3
ST-59
NP10
Growth Factor-Inducible Nuclear Protein N10
Hormone Receptor
Nerve Growth Factor IB Nuclear Receptor Variant 1
Nuclear Receptor Subfamily 4 Group A Member 1
Steroid Receptor TR3
TR3 Orphan Receptor
NAK1
Nur77

Carcinoma Adrenocortical
Gastric Cancer
mammary tumor
Melanoma
Leukemia T-Cell
Shock
Colon Cancer
Parkinson Disease
Pseudohypoaldosteronism
Adenoma
Burkitt Lymphoma
Inflammation
Alzheimers Disease
Atherosclerosis
Ischemia
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prostate cancer
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NR4A1 Gene

nuclear receptor subfamily 4, group A, member 1

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