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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NR3C1 Gene

protein-coding   GIFtS: 71
GCID: GC05M142639

nuclear receptor subfamily 3, group C, member 1 (glucocorticoid...

(Previous names: nuclear receptor subfamily 3, group C, member 1 )
(Previous symbol: GRL)
 Explore 205 diseases affiliated with
NR3C1 via our new
 Human Malady Compendium 
Biological research products
for NR3C1
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Nuclear Receptor Subfamily 3, Group C, Member 1 (Glucocorticoid
Receptor)1 2
     GCCR2
GRL1 2 3 5     Glucocorticoid Nuclear Receptor Variant 12
GR1 2 3     Glucocorticoid Receptor2
GCR2 5     Nuclear Receptor Subfamily 3 Group C Member 13
Nuclear Receptor Subfamily 3, Group C, Member 11     

External Ids:    HGNC: 79781   Entrez Gene: 29082   Ensembl: ENSG000001135807   OMIM: 1380405   UniProtKB: P041503   

Export aliases for NR3C1 gene to outside databases

Previous GC identifers: GC05M142559 GC05M143241 GC05M142687 GC05M137804


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NR3C1:
This gene encodes glucocorticoid receptor, which can function both as a transcription factor that binds to
glucocorticoid response elements in the promoters of glucocorticoid responsive genes to activate their transcription,
and as a regulator of other transcription factors. This receptor is typically found in the cytoplasm, but upon ligand
binding, is transported into the nucleus. It is involved in inflammatory responses, cellular proliferation, and
differentiation in target tissues. Mutations in this gene are associated with generalized glucocorticoid resistance.
Alternative splicing of this gene results in transcript variants encoding either the same or different isoforms.
Additional isoforms resulting from the use of alternate in-frame translation initiation sites have also been
described, and shown to be functional, displaying diverse cytoplasm-to-nucleus trafficking patterns and distinct
transcriptional activities (PMID:15866175). (provided by RefSeq, Feb 2011)

UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
Function: Receptor for glucocorticoids (GC). Has a dual mode of action: as a transcription factor that binds to
glucocorticoid response elements (GRE), both for nuclear and mitochondrial DNA, and as a modulator of other
transcription factors. Affects inflammatory responses, cellular proliferation and differentiation in target tissues.
Could act as a coactivator for STAT5-dependent transcription upon growth hormone (GH) stimulation and could reveal an
essential role of hepatic GR in the control of body growth. Involved in chromatin remodeling. Plays a significant role
in transactivation

summary for NR3C1:
Glucocorticoid receptors (GRs) are nuclear hormone receptors of the NR3C class, which also includes
mineralocorticoid, progesterone and androgen receptors. They exist as homodimers coupled to Hsp90 or HMGB
proteins, which are shed upon activation. The major signaling pathway used by GRs is via direct DNA binding
and transcriptional regulation of target genes. They can also signal by binding to other proteins, mainly
with transcription factors such as NF-kappaB, AP-1 or STAT. GRs are ubiquitously expressed and mediate a
vast array of physiological functions. Glucocorticoids regulate carbohydrate, protein and fat metabolism,
modulate immune responses through supression of chemokine and cytokine production and have critical roles in
constitutive activity of the CNS, digestive, hematopoietic, renal and reproductive systems. The human gene
encoding the glucocorticoid receptor has been localized to 5q31-q32.

Gene Wiki entry for NR3C1 (Glucocorticoid receptor)


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000005.9  NC_018916.1  NT_029289.11  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NR3C1 gene promoter:
         AP-1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): NR3C1 promoter sequence
   Search SABiosciences Chromatin IP Primers for NR3C1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NR3C1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q31.3   Ensembl cytogenetic band:  5q31.3   HGNC cytogenetic band: 5q31-q32

NR3C1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NR3C1 gene location

GeneLoc information about chromosome 5         GeneLoc Exon Structure

GeneLoc location for GC05M142639:  view genomic region     (about GC identifiers)

Start:
142,657,496 bp from pter      End:
142,815,077 bp from pter
Size:
157,582 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: GCR_HUMAN, P04150 (See protein sequence)
Recommended Name: Glucocorticoid receptor  
Size: 777 amino acids; 85659 Da
Subunit: Heteromultimeric cytoplasmic complex with HSP90, HSP70, and FKBP5 or another immunophilin, or the immunophilin
homolog PPP5C. Directly interacts with UNC45A. Upon ligand binding FKBP5 dissociates from the complex and FKBP4 takes
its place, thereby linking the complex to dynein and mediating transport to the nucleus, where the complex dissociates
(By similarity). Binds to DNA as a homodimer, and as a heterodimer with NR3C2 or the retinoid X receptor. Binds STAT5A
and STAT5B homodimers and heterodimers. Interacts with NRIP1, POU2F1, POU2F2 and TRIM28. Interacts with NCOA1, NCOA3,
SMARCA4, SMARCC1, SMARCD1, and SMARCE1 (By similarity). Interacts with several coactivator complexes, including the
SMARCA4 complex, CREBBP/EP300, TADA2L and p160 coactivators such as NCOA2 and NCOA6. Interaction with BAG1 inhibits
transactivation. Interacts with HEXIM1, PELP1 and TGFB1I1
Subcellular location: Cytoplasm. Mitochondrion. Nucleus. Note=Cytoplasmic in the absence of ligand, nuclear after
ligand-binding
Subcellular location: Isoform Beta: Nucleus. Note=Localized largely in the nucleus
Miscellaneous: High constitutive expression of isoform beta by neutrophils may provide a mechanism by which these cells
escape glucocorticoid-induced cell death. Up-regulation by proinflammatory cytokines such as IL8 further enhances
their survival in the presence of glucocorticoids during inflammation
Miscellaneous: Can up- or down-modulate aggregation and nuclear localization of expanded polyglutamine polypeptides
derived from AR and HD through specific regulation of gene expression. Aggregation and nuclear localization of
expanded polyglutamine proteins are regulated cellular processes that can be modulated by this receptor, a
well-characterized transcriptional regulator
6/11 PDB 3D structures from and Proteopedia for NR3C1 (see all 11):
1M2Z (3D)        1NHZ (3D)        1P93 (3D)        3BQD (3D)        3CLD (3D)        3E7C (3D)    
Secondary accessions: A0ZXF9 B0LPG8 D3DQF4 P04151 Q53EP5 Q6N0A4
Alternative splicing, Alternative initiation: 10 isoforms:  P04150-1   P04150-2   P04150-3   P04150-6   P04150-5   P04150-7   P04150-4   P04150-8   
P04150-9   P04150-10   (Produced by alternative initiation at Met-27 of isoform Beta)

Explore the universe of human proteins at neXtProt for NR3C1: NX_P04150

Post-translational modifications:

  • Increased proteasome-mediated degradation in response to glucocorticoids1
  • Phosphorylated in the absence of hormone; becomes hyperphosphorylated in the presence of glucocorticoid. The
  • Ser-203-phosphorylated form is mainly cytoplasmic, and the Ser-211-phosphorylated form is nuclear. Transcriptional
    activity correlates with the amount of phosphorylation at Ser-2111
  • Sumoylated; this reduces transcription transactivation1
  • Ubiquitinated; restricts glucocorticoid-mediated transcriptional signaling (By similarity)1
  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_P04150

  • NR3C1 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (15 alternative transcripts): 
    NP_000167.1  NP_001018084.1  NP_001018085.1  NP_001018086.1  NP_001018087.1  NP_001018661.1  NP_001019265.1  NP_001191187.1  
    NP_001191188.1  NP_001191189.1  NP_001191190.1  NP_001191191.1  NP_001191192.1  NP_001191193.1  NP_001191194.1  

    ENSEMBL proteins: 
     ENSP00000377977   ENSP00000387672   ENSP00000422518   ENSP00000377979   ENSP00000231509  
     ENSP00000427672   ENSP00000424747   ENSP00000425313   ENSP00000420856   ENSP00000426478  
     ENSP00000425374   ENSP00000343205   ENSP00000405282   ENSP00000404218  
    Reactome Protein details: P04150
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
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    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    OriGene Protein Over-expression Lysate (see all 3): NR3C1
    OriGene Custom Protein Services for NR3C1 
    GenScript Custom Purified and Recombinant Proteins Services for NR3C1
    Novus Biologicals NR3C1 Proteins
    Novus Biologicals NR3C1 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for NR3C1

    Gene Ontology (GO): 5/12 cellular component terms (GO ID links to tree view) (see all 12):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----
    GO:0005634nucleus IDA--
    GO:0005654nucleoplasm TAS--
    GO:0005730NOT nucleolus IDA--
    GO:0005737cytoplasm IDA--


    NR3C1 for ontologies           About GeneDecksing



    NR3C1 Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of NR3C1
    R&D Systems Antibodies for NR3C1 (GR/NR3C1)
    Cell Signaling Technology (CST) Antibodies for NR3C1  (GR)
    OriGene Antibodies (see all 2): NR3C1
    OriGene Custom Antibody Services for NR3C1 
    GenScript Superior Antibodies for NR3C1
    Novus Biologicals NR3C1 Antibodies
    Abcam antibodies for NR3C1 
    Uscn Antibodies for NR3C1
    ThermoFisher Antibody for NR3C1

    Assay Products for NR3C1: 
    Browse Kits and Assays available from EMD Millipore
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    Browse R&D Systems for biochemical assays
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    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for NR3C1


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    NR3C1 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR013088 Znf_NHR/GATA
     IPR008946 Nucl_hormone_rcpt_ligand-bd
     IPR000536 Nucl_hrmn_rcpt_lig-bd_core
     IPR001628 Znf_hrmn_rcpt
     IPR001723 Str_hrmn_rcpt

    Graphical View of Domain Structure for InterPro Entry P04150

    ProtoNet protein and cluster: P04150

    2 Blocks protein families:
    IPB001409 Glucocorticoid receptor signature
    IPB001723 Steroid hormone receptor signature


    UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
    Domain: Composed of three domains: a modulating N-terminal domain, a DNA-binding domain and a C-terminal ligand-binding
    domain
    Similarity: Belongs to the nuclear hormone receptor family. NR3 subfamily
    Similarity: Contains 1 nuclear receptor DNA-binding domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
    Function: Receptor for glucocorticoids (GC). Has a dual mode of action: as a transcription factor that binds to
    glucocorticoid response elements (GRE), both for nuclear and mitochondrial DNA, and as a modulator of other
    transcription factors. Affects inflammatory responses, cellular proliferation and differentiation in target tissues.
    Could act as a coactivator for STAT5-dependent transcription upon growth hormone (GH) stimulation and could reveal an
    essential role of hepatic GR in the control of body growth. Involved in chromatin remodeling. Plays a significant role
    in transactivation

         Genatlas biochemistry entry for NR3C1:
    nuclear recptor subafamily 3,group C,member 1,steroid/thyroid hormone receptor superfamily,interacting with
    tissue-specific transcriptional activators required for receptor actin (see HNFS)

    10/1359 SABiosciences Target genes for NR3C1 (see all 1359):
    A2M ABCA10 ABCA8 ABCC3 ABCC4 ABCC6 ABCC8 ABCC9 ABCD2 ABCG4

    miRNA
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    miRTarBase miRNAs that target NR3C1:
    hsa-mir-124 (MIRT004546), hsa-mir-18a (MIRT004545)

    OriGene 3'-UTR Clone (see all 7): NR3C1
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NR3C1
    8/161 QIAGEN miScript miRNA Assays for microRNAs that regulate NR3C1 (see all 161):
    hsa-miR-411* hsa-miR-199a-3p hsa-miR-1273d hsa-miR-376a* hsa-miR-642b hsa-miR-200b hsa-miR-200c* hsa-miR-147
    SwitchGear 3'UTR luciferase reporter plasmidNR3C1 3' UTR sequence
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NR3C1 (see all 7)
    OriGene shRNA RFP: NR3C1
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    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NR3C1

    Gene Editing
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    DNA2.0 Custom Protein Engineering Service for NR3C1

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NR3C1 (see all 9)
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    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 15): NR3C1 (NM_001024094)
    Browse Sino Biological Human cDNA Clones
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    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NR3C1 

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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NR3C1

    Gene Ontology (GO): 5/19 molecular function terms (GO ID links to tree view) (see all 19):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677DNA binding ----
    GO:0003682chromatin binding ----
    GO:0003690double-stranded DNA binding ----
    GO:0003700sequence-specific DNA binding transcription factor activity IEA--
    GO:0003707steroid hormone receptor activity ----


    NR3C1 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for NR3C1:
     Decreased viability  Increased cell death HMECs cel 

    Animal Models:
         Mouse knock-outs for NR3C1: Nr3c1tm1Ljm Nr3c1tm1Gsc Nr3c1tm2.1Gsc
         15/20 MGI mutant phenotypes (inferred from 12 alleles(MGI details for Nr3c1) (see all 20):
     adipose tissue  behavior/neurological  cardiovascular system  cellular  digestive/alimentary 
     endocrine/exocrine gland  growth/size  hematopoietic system  homeostasis/metabolism  immune system 
     integument  liver/biliary system  mortality/aging  nervous system  no phenotypic analysis 

    NR3C1 for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways - 5/25 super-pathways (see all 25About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Transcription_Role of VDR in regulation of genes involved in osteoporosis
    Transcription_Role of VDR in regulation of genes involved in osteoporosis1.00
    Transcription Role of VDR in regulation of genes involved in osteoporosis0.80
    2Development_Prolactin receptor signaling
    Development_Prolactin receptor signaling1.00
    Development Prolactin receptor signaling1.00
    3Immune response_MIF-JAB1 signaling
    Immune response_MIF-JAB1 signaling1.00
    Immune response MIF-JAB1 signaling0.97
    4Nuclear Receptor transcription pathway
    Nuclear Receptor transcription pathway1.00
    Nuclear Receptors0.68
    5Generic Transcription Pathway
    Generic Transcription Pathway1.00
    Gene Expression0.46

    Pathway sources
    See GeneCards unified pathways
    Show all pathways

    5/8 EMD Millipore Pathways for NR3C1 (see all 8)
        Transcription Role of VDR in regulation of genes involved in osteoporosis
    Development Glucocorticoid receptor signaling
    Selected targets of GCR-alpha
    Proteolysis Putative SUMO-1 pathway
    Immune response IL-6 signaling pathway

    1 R&D Systems Pathway for NR3C1
        TGF-beta Signaling Pathways

    4 Downloadable PowerPoint Slides of QIAGEN Pathway Central Maps for NR3C1
        Glucocorticoid Receptor Signaling
    NTHi-Induced Signaling
    Prolactin Signaling
    MIF Mediated Glucocorticoid Regulation

    5/7 GeneGo (Thomson Reuters) Pathways for NR3C1 (see all 7)
        Immune response IL-6 signaling pathway
    Immune response MIF-mediated glucocorticoid regulation
    Development Prolactin receptor signaling
    Proteolysis Putative SUMO-1 pathway
    Transcription Role of VDR in regulation of genes involved in osteoporosis

    5/10 BioSystems Pathways for NR3C1 (see all 10
        SIDS Susceptibility Pathways
    Serotonin Receptor 4/6/7 and NR3C Signaling
    Adipogenesis
    Nuclear Receptors
    IL-2 Signaling Pathway

    3        Reactome Pathways for NR3C1
        Generic Transcription Pathway
    Nuclear Receptor transcription pathway
    Gene Expression

    2 PharmGKB Pathways for NR3C1
        Glucocorticoid Pathway (Peripheral Tissue), Pharmacodynamics
    Glucocorticoid Pathway (Peripheral Tissue), Pharmacodynamics

    1         Kegg Pathway  (Kegg details for NR3C1):
        Neuroactive ligand-receptor interaction


    NR3C1 for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NR3C1

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/237 Interacting proteins for NR3C1 (P041501, 2, 3 ENSP000002315094) via UniProtKB, MINT, STRING, and/or I2D (see all 237)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    LCKP062392, 3, ENSP000003378254MINT-3373935 MINT-3374072 MINT-3373920 I2D: score=2 STRING: ENSP00000337825
    SFNP319472, 3, ENSP000003409894MINT-14116 MINT-14115 I2D: score=3 STRING: ENSP00000340989
    CD4P017302, 3, ENSP000000116534MINT-3373972 MINT-3373954 I2D: score=1 STRING: ENSP00000011653
    CD3DP042342, 3, ENSP000003006924MINT-3374054 I2D: score=1 STRING: ENSP00000300692
    HMOX2P305192, 3MINT-8258368 I2D: score=2 
    About this table

    Gene Ontology (GO): 5/34 biological process terms (GO ID links to tree view) (see all 34):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006111regulation of gluconeogenesis IEA--
    GO:0006338chromatin remodeling ----
    GO:0006351transcription, DNA-dependent TAS10887960
    GO:0006355regulation of transcription, DNA-dependent ----
    GO:0006366transcription from RNA polymerase II promoter TAS8621628


    NR3C1 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    NR3C1 for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Enzo Life Sciences drugs & compounds for NR3C1

    Compounds for NR3C1 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    MifepristoneProgesterone and glucocorticoid antagonist[84371-65-3]
    GSK 9027Glucocorticoid receptor agonist[1229096-88-1]
    DexamethasoneAnti-inflammatory glucocorticoid[50-02-2]
    BudesonideSynthetic glucocorticoid; anti-inflammatory and chemopreventive[51333-22-3]
    Fluticasone propionateSelective high affinity glucocorticoid agonist[80474-14-2]

    4 HMDB Compounds for NR3C1    About this table
    CompoundSynonyms CAS #PubMed Ids
    Aldosterone(+)-Aldosterone (see all 22)52-39-117602195
    Cortexolone11-Deoxy-17-hydroxycorticosterone (see all 21)152-58-93741883
    Deoxycorticosterone11-Dehydroxycorticosterone (see all 21)64-85-73741883
    Cortisol11-Hydrocortisone (see all 173)50-23-7--

    10/39 DrugBank Compounds for NR3C1 (see all 39)    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    Amcinonide-- 51022-69-6targetagonist16895953 17139284 17016423 16980198 16891588 17086345 17038445
    Cortisone acetate-- 50-04-4targetagonist7062741 16895953 7054210 16980198 16891588 17086345 17038445
    Flunisolide-- 3385-03-3targetagonist2386110 15285788 8466638 11752352 11368283 9563368 9523318
    Budesonide-- 51333-22-3targetantagonist12920235 12601049 11258648 11730731 11752352 11040338
    Desoximetasone-- 382-67-2targetagonist16895953 10754457 16980198 16891588 17086345 17038445
    DexamethasoneDesametasone (see all 9)50-02-2targetagonist16956592 16835395 16971495 11752352 16891588 16963802
    FluorometholoneFluormetholon (see all 4)426-13-1targetagonist15684812 16895953 16980198 16891588 17086345 17038445
    Fluticasone Propionate-- 80474-14-2targetagonist7878687 11730731 10200007 10518812 11752352 8646863
    MegestrolMegestrol Acetate (see all 5)3562-63-8targetagonist9195366 18411198 9744490 6222739 2982481 15595341
    Paramethasone-- 53-33-8targetagonist16895953 16980198 16891588 17086345 16255837 17038445

    10/120 Novoseek chemical compound relationships for NR3C1 gene (see all 120)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    dexamethasone 91.8 1114 8574285 (4), 12781044 (4), 19167480 (4), 18657064 (4) (see all 99)
    mifepristone 91.4 396 19635558 (8), 17509631 (5), 12695529 (4), 14671179 (3) (see all 99)
    steroid 86 485 15155759 (4), 16890204 (4), 2168876 (3), 9731032 (3) (see all 99)
    11beta-hydroxysteroid 85.6 72 11836450 (3), 15866114 (2), 19048413 (2), 10588816 (1) (see all 52)
    cortisone 78.3 32 15062542 (2), 16178882 (2), 15780662 (1), 8200959 (1) (see all 21)
    cortivazol 76.6 24 11741935 (4), 2205477 (2), 15677712 (2), 2039752 (2) (see all 7)
    androstane 75.5 44 16399345 (2), 19541828 (2), 16188404 (2), 15933212 (2) (see all 24)
    progesterone 74.3 351 1920329 (4), 20156884 (4), 2249895 (3), 18060946 (3) (see all 99)
    corticosterone 72.2 114 2257242 (3), 17446698 (3), 12538030 (3), 10624831 (2) (see all 59)
    fluticasone propionate 69 48 15860753 (3), 10200007 (3), 9087160 (2), 12503693 (2) (see all 29)

    Search CenterWatch for drugs/clinical trials and news about NR3C1 / GCR 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for NR3C1 gene (15 alternative transcripts): 
    NM_000176.2  NM_001018074.1  NM_001018075.1  NM_001018076.1  NM_001018077.1  NM_001020825.1  NM_001024094.1  NM_001204258.1  
    NM_001204259.1  NM_001204260.1  NM_001204261.1  NM_001204262.1  NM_001204263.1  NM_001204264.1  NM_001204265.1  

    Unigene Cluster for NR3C1:

    Nuclear receptor subfamily 3, group C, member 1 (glucocorticoid receptor)
    Hs.122926  [show with all ESTs]
    Unigene Representative Sequence: NM_001018077
    17 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000394464(uc003lmy.3 uc003lmz.3 uc003lna.3 uc003lnb.3 uc011dbk.2)
    ENST00000415690 ENST00000504572 ENST00000394466(uc003lni.2) ENST00000231509(uc021yfb.1)
    ENST00000503201(uc021yfa.1 uc003lng.2) ENST00000504336 ENST00000510170
    ENST00000508760 ENST00000502892 ENST00000514699 ENST00000502500 ENST00000503701
    ENST00000505058 ENST00000343796(uc003lnc.3 uc003lnf.3 uc003lnd.3 uc003lne.3)
    ENST00000424646 ENST00000416954

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    8/161 QIAGEN miScript miRNA Assays for microRNAs that regulate NR3C1 (see all 161):
    hsa-miR-411* hsa-miR-199a-3p hsa-miR-1273d hsa-miR-376a* hsa-miR-642b hsa-miR-200b hsa-miR-200c* hsa-miR-147
    SwitchGear 3'UTR luciferase reporter plasmidNR3C1 3' UTR sequence
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    Additional cDNA sequence: 

    AB307716.1 AJ877166.1 AJ877167.1 AJ877168.1 AJ877169.1 AJ877170.1 AJ877171.1 AJ877172.1 
    AJ888004.1 AK223594.1 AK302050.1 AK314789.1 AM183262.1 BC015610.2 BX640610.1 BX648553.1 
    HQ692822.1 JN797823.1 JN797824.1 U01351.1 U25029.1 X03225.1 X03348.1 

    23 DOTS entries:

    DT.100786784  DT.99998911  DT.85105550  DT.95296381  DT.95269160  DT.100786795  DT.100786792  DT.207488 
    DT.92441907  DT.102832223  DT.120796451  DT.120796581  DT.40126589  DT.120796608  DT.100786783  DT.100786785 
    DT.120796481  DT.218847  DT.100037621  DT.100737448  DT.100786786  DT.100786788  DT.120796605 

    24/383 AceView cDNA sequences (see all 383):

    AU139241 AA234527 BQ433598 BE739816 BU619054 CA777596 AI934556 AA252235 
    BU147202 CA416785 AA437348 CB132485 CA392568 BQ005253 AW299567 AA382009 
    BM310859 CB112400 BQ030399 CA310206 U01351 BE875671 BF433954 BM468899 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    NR3C1 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    NR3C1 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Skeletal MuscleHyoid Arch MusclesMuscle Progenitor CellsSkeletal Muscle
    Skeletal MuscleMandibular Arch MusclesMuscle Progenitor CellsSkeletal Muscle
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See NR3C1 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for NR3C1

    SOURCE GeneReport for Unigene cluster: Hs.122926

    UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
    Tissue specificity: Widely expressed. In the heart, detected in left and right atria, left and right ventricles, aorta,
    apex, intraventricular septum, and atrioventricular node as well as whole adult and fetal heart

        SABiosciences Expression via Pathway-Focused PCR Arrays including NR3C1 (see all 10): 
              Nuclear Receptors & Coregulators in human mouse rat
              Inflammatory Response & Autoimmunity in human mouse rat
              T-cell & B-cell Activation in human mouse rat
              JAK / STAT Signaling Pathway in human mouse rat
              Inflammatory Response & Autoimmunity 384HT in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for NR3C1 gene from 6/18 species (see all 18)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nr3c11 , 5 nuclear receptor subfamily 3, group C, member 11, 5 89.58(n)1
    90.7(a)1
      18 (21.09 cM)5
    148151  NM_008173.31  NP_032199.31 
     394105455 
    chicken
    (Gallus gallus)
    Aves NR3C11 nuclear receptor subfamily 3, group C, member 1 (glucocorticoid more 74.25(n)
    75.81(a)
      416343  NM_001037826.1  NP_001032915.1 
    lizard
    (Anolis carolinensis)
    Reptilia NR3C16
    --
    75(a)
    1 ↔ 1
    2(126275215-126336129)
    African clawed frog
    (Xenopus laevis)
    Amphibia xGR2 glucocorticoid receptor protein 76.06(n)    X72211.1 
    zebrafish
    (Danio rerio)
    Actinopterygii CB362131.12   -- 72.79(n)    CB362131.1 
    worm
    (Caenorhabditis elegans)
    Secernentea nhr-256
    Nuclear hormone receptor family member nhr-25
    13(a)
    1 → many
    X(13008424-13013892)


    ENSEMBL Gene Tree for NR3C1 (if available)
    TreeFam Gene Tree for NR3C1 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for NR3C1 gene
    ESRRA2  RXRG2  PGR2  ESR22  ESRRB2  HNF4G2  NR2F62  NR2E12  
    ESRRG2  NR3C22  RXRA2  NR2F12  NR2F22  AR2  ESR12  NR2C12  
    HNF4A2  NR2C22  RXRB2  
    16 SIMAP similar genes for NR3C1 using alignment to 14 protein entries:     GCR_HUMAN (see all proteins):
    NR5A1    NR3C4    ESR1    VDR    NR1I3    HNF4G
    RORA    PGR    AR    HNF4alpha    NR3C2    ESRRB
    ESR2    PPARA    ESRRA    ERRgamma

    NR3C1 for paralogs           About GeneDecksing


    1 Pseudogenes.org Pseudogene for NR3C1
    PGOHUM00000249184


    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
    Polymorphism: Carriers of the 22-Glu-Lys-23 allele are relatively more resistant to the effects of GCs with respect to
    the sensitivity of the adrenal feedback mechanism than non-carriers, resulting in a better metabolic health profile.
    Carriers have a better survival than non-carriers, as well as lower serum CRP levels. The 22-Glu-Lys-23 polymorphism
    is associated with a sex-specific, beneficial body composition at young-adult age, as well as greater muscle strength
    in males


    10/2599 NCBI SNPs in NR3C1 are shown (see all 2599    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 5 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs561499451,2
    C,F,non-pathogenic162638002(-) CGAAAA/G/TTTGGA 45 N S I mis125NS MN WA EA CSA NA EU 11922
    rs1048939131,2
    Cpathogenic162727619(-) ATGCCA/GCTATC 30 H R mis10--------
    rs1048939091,2
    Cpathogenic162737194(-) GAGGAA/TCATGA 30 N I mis10--------
    rs1048939081,2
    Cpathogenic162742189(-) GTACGA/TCCAAT 30 D V mis10--------
    rs1048939141,2
    Cpathogenic162754972(-) AGGACA/GGTCTG 28 S G mis10--------
    rs1048939101,2
    Cpathogenic162755704(-) AGTATG/TGAATT 27 M I mis1 int10--------
    rs172877581,2
    C,F,H,--137804258(+) GAATGG/AATTGT 14 -- ds500125Minor allele frequency- A:0.13NA NS EA CSA WA 4448
    rs617548051,2
    F--137804259(-) TACAAT/CCCATT 14 -- ds50013Minor allele frequency- C:0.00NS 2006
    rs617548041,2
    F--137804390(-) CTAGTC/GAAAAT 14 -- ds50013Minor allele frequency- G:0.00NS 1996
    rs172092371,2
    C,F,H,--137804449(+) TTTGAA/GGCAGC 14 -- ds500123Minor allele frequency- G:0.14NA NS EA 4350

    HapMap Linkage Disequilibrium report for NR3C1 (142657496 - 142815077 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 4 variations for NR3C1
         2 CNVs: 7475 6451
         2 Indels: 46781 12763
    Human Gene Mutation Database (HGMD): NR3C1

    Locus Specific Mutation Databases (LSDB): NR3C1

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    NR3C1 for disorders           About GeneDecksing

    OMIM gene information: 138040    OMIM disorders: --

    UniProtKB/Swiss-Prot: GCR_HUMAN, P04150
  • Defects in NR3C1 are a cause of glucocorticoid resistance (GCRES) [MIM:138040]; also known as cortisol
  • resistance. It is a hypertensive, hyperandrogenic disorder characterized by increased serum cortisol concentrations.
    Inheritance is autosomal dominant

    20/205 diseases for NR3C1 (see all 205):    About MalaCards
    glucocorticoid-remediable aldosteronism    corticosteroid-binding globulin deficiency    glucocorticoid resistance    dosage-sensitive sex reversal
    open-angle glaucoma    post-traumatic stress disorder    pituitary-dependent cushing's disease    21-hydroxylase deficiency
    estrogen-receptor negative breast cancer    pre-b-cell acute lymphoblastic leukemia    spinal cord injury    primary pigmented nodular adrenocortical disease
    sex reversal    treacher collins syndrome    primary open angle glaucoma    cortisol resistance
    patent ductus arteriosus    enhanced s-cone syndrome    glucose intolerance    primary cortisol resistance

    1 disease from the University of Copenhagen DISEASES database for NR3C1:
    Proteinuria

    10/91 Novoseek disease relationships for NR3C1 gene (see all 91)    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    cushing syndrome 69.7 17 10802524 (2), 1794941 (1), 16456492 (1), 16855182 (1) (see all 13)
    mammary tumor 63.9 36 1871124 (2), 10748103 (2), 2159467 (1), 8407999 (1) (see all 28)
    hypercortisolism 61.5 4 17587649 (1), 10995524 (1), 16118334 (1), 18406688 (1)
    hypercortisolemia 61.2 8 16546487 (1), 12399952 (1), 17037809 (1), 11131467 (1) (see all 5)
    asthma 55.9 137 18799869 (5), 9560836 (4), 18952539 (3), 9329880 (3) (see all 66)
    major depression 55.3 70 11274650 (5), 16019586 (4), 12727135 (3), 12242054 (2) (see all 36)
    acth syndrome ectopic 49.5 4 8396510 (1), 7958079 (1), 20015838 (1), 8254033 (1)
    shock 46.3 151 11463862 (8), 8745575 (5), 14673132 (4), 7917000 (3) (see all 69)
    nasal polyps 44.6 18 18671773 (3), 19848249 (2), 18396779 (2), 11800371 (2) (see all 9)
    inflammation 43.3 44 10435109 (2), 18821468 (2), 9482836 (1), 15541765 (1) (see all 32)

    Genetic Association Database (GAD): NR3C1
    Human Genome Epidemiology (HuGE) Navigator: NR3C1 (169 documents)

    Export disorders for NR3C1 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for NR3C1 gene, integrated from 9 sources (see all 2367):
    (articles sorted by number of sources associating them with NR3C1)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The ER22/23EK polymorphism in the glucocorticoid receptor gene is associated with a beneficial body composition and muscle strength in young adults. (PubMed id 15292341)1, 2, 4 van Rossum E.F.C.... Lamberts S.W.J. (2004)
    2. Association of the ER22/23EK polymorphism in the glucocorticoid receptor gene with survival and C-reactive protein levels in elderly men. (PubMed id 15276593)1, 2, 4 van Rossum E.F.C.... Lamberts S.W.J. (2004)
    3. A polymorphism in the glucocorticoid receptor gene, which decreases sensitivity to glucocorticoids in vivo, is associated with low insulin and cholesterol levels. (PubMed id 12351458)1, 2, 4 van Rossum E.F.C.... Lamberts S.W.J. (2002)
    4. Lack of association between five polymorphisms in the human glucocorticoid receptor gene and glucocorticoid resistance. (PubMed id 9150737)1, 2, 4 Koper J.W....Lamberts S.W.J. (1997)
    5. Primary structure and expression of a functional human glucocorticoid receptor cDNA. (PubMed id 2867473)1, 2, 3 Hollenberg S.M.... Evans R.M. (1985)
    6. Proteasome-mediated glucocorticoid receptor degradation restricts transcriptional signaling by glucocorticoids. (PubMed id 11555652)1, 2, 9 Wallace A.D. and Cidlowski J.A. (2001)
    7. Identification of a novel glucocorticoid receptor mutation in budesonide-resistant human bronchial epithelial cells. (PubMed id 12920235)1, 7, 9 Kunz S....Miesfeld R.L. (2003)
    8. Regulation of expanded polyglutamine protein aggregation and nuclear localization by the glucocorticoid receptor. (PubMed id 10639135)1, 2, 9 Diamond M.I.... Yamamoto K.R. (2000)
    9. Identification of the activation-labile gene: a single point mutation in the human glucocorticoid receptor presents as two distinct receptor phenotypes. (PubMed id 8316249)1, 2, 9 Ashraf J. and Thompson E.B. (1993)
    10. Glucocorticoid receptor gene, low-grade inflammation, and heart failure: the Heart and Soul study. (PubMed id 20371666)1, 7, 9 Otte C....Whooley M.A. (2010)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 2908 HGNC: 7978 AceView: NR3C1 Ensembl:ENSG00000113580 euGenes: HUgn2908
    ECgene: NR3C1 Kegg: 2908 H-InvDB: NR3C1

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for NR3C1 Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/sites/GeneTests/lab/gene/NR3C1
    NIEHS-SNPshttp://egp.gs.washington.edu/data/nr3c1/
    Wikipedia http://en.wikipedia.org/wiki/Glucocorticoid_receptor

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for NR3C1 gene:
    Search GeneIP for patents involving NR3C1

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NR3C1
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

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    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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