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Aliases for NR2F2-AS1 Gene

Subcategory (RNA class) for NR2F2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NR2F2-AS1 Gene

  • NR2F2 Antisense RNA 1 2 3 5
  • NR2F2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NR2F2-AS1 Gene

Previous GeneCards Identifiers for NR2F2-AS1 Gene

  • GC15M096671

Summaries for NR2F2-AS1 Gene

GeneCards Summary for NR2F2-AS1 Gene

NR2F2-AS1 (NR2F2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NR2F2-AS1 Gene

Genomics for NR2F2-AS1 Gene

Regulatory Elements for NR2F2-AS1 Gene

Enhancers for NR2F2-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15G096260 1.8 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +63.9 63924 5.9 FOXA2 PKNOX1 MLX ZFP64 ARID4B SIN3A FEZF1 ZNF48 GATA2 FOS NR2F2 NR2F2-AS1 MIR1469 GC15M096250 GC15P096285
GH15G096272 1.6 Ensembl ENCODE dbSUPER 11.1 +51.9 51919 6.1 HDGF PKNOX1 CREB3L1 ARNT ZNF766 CBX5 FOS JUNB REST ZNF592 NR2F2 NR2F2-AS1 GC15P096285 GC15M096250
GH15G096158 1.3 FANTOM5 Ensembl ENCODE 10.5 +167.7 167712 3.0 CTCF MAX FEZF1 ZNF384 RAD21 TCF12 ZNF316 GATA2 ZBTB48 ZSCAN5C NR2F2 NR2F2-AS1 LOC105369212 LOC105370997
GH15G096052 1.3 Ensembl ENCODE 10.4 +274.0 273990 2.3 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 YY1 ZNF592 SREBF1 ZNF610 SMARCA4 NR2F2 NR2F2-AS1 MIR1469 LOC105370998 ENSG00000259702
GH15G096284 1.2 Ensembl ENCODE dbSUPER 10.8 +41.6 41556 2.8 L3MBTL2 BHLHE40 MAX ATF2 ZFHX2 JUND EGR1 ZNF157 GLIS1 CREB1 NR2F2 NR2F2-AS1 MIR1469 ENSG00000279645 GC15P096285
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NR2F2-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NR2F2-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000081603 861 3401 PKNOX1 FOXA2 ARNT WRNIP1 ARID4B SIN3A ZNF2 ZNF48 YY1 TCF12

Genomic Location for NR2F2-AS1 Gene

Chromosome:
15
Start:
96,110,040 bp from pter
End:
96,327,361 bp from pter
Size:
217,322 bases
Orientation:
Minus strand

Genomic View for NR2F2-AS1 Gene

Genes around NR2F2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NR2F2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NR2F2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NR2F2-AS1 Gene

Proteins for NR2F2-AS1 Gene

Post-translational modifications for NR2F2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NR2F2-AS1 Gene

Domains & Families for NR2F2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NR2F2-AS1 Gene

Function for NR2F2-AS1 Gene

Phenotypes for NR2F2-AS1 Gene

GenomeRNAi human phenotypes for NR2F2-AS1:
genes like me logo Genes that share phenotypes with NR2F2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NR2F2-AS1 Gene

Localization for NR2F2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NR2F2-AS1 Gene

Pathways & Interactions for NR2F2-AS1 Gene

SuperPathways for NR2F2-AS1 Gene

No Data Available

Interacting Proteins for NR2F2-AS1 Gene

Gene Ontology (GO) - Biological Process for NR2F2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NR2F2-AS1 Gene

Drugs & Compounds for NR2F2-AS1 Gene

No Compound Related Data Available

Transcripts for NR2F2-AS1 Gene

mRNA/cDNA for NR2F2-AS1 Gene

(6) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NR2F2-AS1 Gene

NR2F2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NR2F2-AS1 Gene

No ASD Table

Relevant External Links for NR2F2-AS1 Gene

GeneLoc Exon Structure for
NR2F2-AS1
ECgene alternative splicing isoforms for
NR2F2-AS1

Expression for NR2F2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NR2F2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NR2F2-AS1 Gene

This gene is overexpressed in Ovary (x5.7).

SOURCE GeneReport for Unigene cluster for NR2F2-AS1 Gene:

Hs.58690
genes like me logo Genes that share expression patterns with NR2F2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NR2F2-AS1 Gene

Orthologs for NR2F2-AS1 Gene

Evolution for NR2F2-AS1 Gene

ENSEMBL:
Gene Tree for NR2F2-AS1 (if available)
TreeFam:
Gene Tree for NR2F2-AS1 (if available)

No data available for Orthologs for NR2F2-AS1 Gene

Paralogs for NR2F2-AS1 Gene

No data available for Paralogs for NR2F2-AS1 Gene

Variants for NR2F2-AS1 Gene

Sequence variations from dbSNP and Humsavar for NR2F2-AS1 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs1000013624 -- 96,173,409(+) GATGA(G/T)TCAAG intron-variant
rs1000016573 -- 96,212,317(+) GACAA(A/C)TAGGT intron-variant
rs1000031457 -- 96,218,483(+) TCTTG(C/T)CTGCC intron-variant
rs1000036781 -- 96,241,137(+) ATAAT(A/G)CTGCA intron-variant
rs1000064128 -- 96,260,446(+) CGCAT(G/T)AAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NR2F2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv448n67 CNV gain 20364138
esv1010146 OTHER inversion 20482838
esv2661870 CNV deletion 23128226
esv2668718 CNV deletion 23128226
esv2750078 CNV deletion 23290073
esv2750079 CNV deletion 23290073
esv2750080 CNV deletion 23290073
esv3581841 CNV loss 25503493
esv3637349 CNV loss 21293372
esv3637351 CNV loss 21293372
nsv1113738 CNV deletion 24896259
nsv1131217 CNV deletion 24896259
nsv1141674 CNV deletion 24896259
nsv1681 CNV deletion 18451855
nsv510408 OTHER sequence alteration 20534489
nsv570579 CNV loss 21841781
nsv827449 CNV gain 20364138
nsv94578 CNV deletion 16902084

Relevant External Links for NR2F2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NR2F2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NR2F2-AS1 Gene

Disorders for NR2F2-AS1 Gene

Relevant External Links for NR2F2-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NR2F2-AS1

No disorders were found for NR2F2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NR2F2-AS1 Gene

Publications for NR2F2-AS1 Gene

  1. Genome-wide meta-analysis identifies new susceptibility loci for migraine. (PMID: 23793025) Anttila V. … . (Nat. Genet. 2013) 3 64
  2. Family-based genome-wide association study of frontal I, oscillations identifies potassium channel gene KCNJ6. (PMID: 22554406) Kang S.J. … Porjesz B. (Genes Brain Behav. 2012) 3 64
  3. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. (PMID: 17554300) (Nature 2007) 3 64
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NR2F2-AS1 Gene

Sources for NR2F2-AS1 Gene

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