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Aliases for NR2F2-AS1 Gene

Subcategory (RNA class) for NR2F2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NR2F2-AS1 Gene

  • NR2F2 Antisense RNA 1 2 3 5
  • NR2F2 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NR2F2-AS1 Gene

Previous GeneCards Identifiers for NR2F2-AS1 Gene

  • GC15M096671

Summaries for NR2F2-AS1 Gene

GeneCards Summary for NR2F2-AS1 Gene

NR2F2-AS1 (NR2F2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NR2F2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NR2F2-AS1 Gene

Genomics for NR2F2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NR2F2-AS1 Gene

Promoters and enhancers for NR2F2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15I096319 Promoter/Enhancer 3.3 UCNEbase EPDnew FANTOM5 Ensembl ENCODE dbSUPER 15.6 -13.3 -13270 41.9 CLOCK ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF213 E2F8 ZNF143 ZNF263 NR2F2 NR2F2-AS1 LINC00924 ENSG00000275322 GC15M096552 MIR1469 LOC101927263 PIR46489
GH15I096260 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 +63.9 63923 5.9 PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A FEZF1 ZNF48 ETS1 ATF7 NR2F2 NR2F2-AS1 MIR1469 GC15M096545 GC15P096285 ENSG00000275443
GH15I096272 Enhancer 1.4 Ensembl ENCODE dbSUPER 11.1 +51.9 51919 6.1 HDGF PKNOX1 SMAD1 ARNT IRF4 ZNF766 CBX5 E2F8 FOS KLF13 NR2F2 NR2F2-AS1 GC15P096285 GC15M096545 ENSG00000275443
GH15I095556 Enhancer 1.5 FANTOM5 Ensembl ENCODE 10.2 +768.9 768924 4.1 PKNOX1 CLOCK ARNT FEZF1 ZNF2 IRF4 ZNF766 CBX5 ZNF213 FOS NR2F2 NR2F2-AS1 LOC105370995 LOC105370993
GH15I096052 Enhancer 1.2 Ensembl ENCODE 10.4 +274.0 273989 2.3 PKNOX1 FOXA2 ARNT FEZF1 ZNF2 YY1 ZNF213 REST ZNF592 SREBF1 LINC01197 NR2F2 NR2F2-AS1 MIR1469 LINC00924 LOC105370998 GC15M096550 ENSG00000275443
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NR2F2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NR2F2-AS1 Gene

Genomic Locations for NR2F2-AS1 Gene
chr15:96,110,040-96,327,361
(GRCh38/hg38)
Size:
217,322 bases
Orientation:
Minus strand
chr15:96,670,598-96,870,590
(GRCh37/hg19)

Genomic View for NR2F2-AS1 Gene

Genes around NR2F2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NR2F2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NR2F2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NR2F2-AS1 Gene

Proteins for NR2F2-AS1 Gene

Post-translational modifications for NR2F2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NR2F2-AS1 Gene

Domains & Families for NR2F2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NR2F2-AS1 Gene

Function for NR2F2-AS1 Gene

Phenotypes From GWAS Catalog for NR2F2-AS1 Gene

Phenotypes for NR2F2-AS1 Gene

GenomeRNAi human phenotypes for NR2F2-AS1:
genes like me logo Genes that share phenotypes with NR2F2-AS1: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NR2F2-AS1 Gene

Localization for NR2F2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NR2F2-AS1 Gene

Pathways & Interactions for NR2F2-AS1 Gene

SuperPathways for NR2F2-AS1 Gene

No Data Available

Interacting Proteins for NR2F2-AS1 Gene

Gene Ontology (GO) - Biological Process for NR2F2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NR2F2-AS1 Gene

Drugs & Compounds for NR2F2-AS1 Gene

No Compound Related Data Available

Transcripts for NR2F2-AS1 Gene

mRNA/cDNA for NR2F2-AS1 Gene

(6) Additional mRNA sequences :
(15) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NR2F2-AS1 Gene

NR2F2 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NR2F2-AS1 Gene

No ASD Table

Relevant External Links for NR2F2-AS1 Gene

GeneLoc Exon Structure for
NR2F2-AS1
ECgene alternative splicing isoforms for
NR2F2-AS1

Expression for NR2F2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NR2F2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NR2F2-AS1 Gene

This gene is overexpressed in Ovary (x5.7).

SOURCE GeneReport for Unigene cluster for NR2F2-AS1 Gene:

Hs.58690
genes like me logo Genes that share expression patterns with NR2F2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NR2F2-AS1 Gene

Orthologs for NR2F2-AS1 Gene

Evolution for NR2F2-AS1 Gene

ENSEMBL:
Gene Tree for NR2F2-AS1 (if available)
TreeFam:
Gene Tree for NR2F2-AS1 (if available)

No data available for Orthologs for NR2F2-AS1 Gene

Paralogs for NR2F2-AS1 Gene

No data available for Paralogs for NR2F2-AS1 Gene

Variants for NR2F2-AS1 Gene

Sequence variations from dbSNP and Humsavar for NR2F2-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1085307757 uncertain-significance, not specified 96,326,353(-) G/A intron_variant
rs1000013624 -- 96,173,409(-) G/T genic_downstream_transcript_variant, intron_variant
rs1000016573 -- 96,212,317(-) A/C genic_downstream_transcript_variant, intron_variant
rs1000031457 -- 96,218,483(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000036781 -- 96,241,137(-) A/G genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NR2F2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv448n67 CNV gain 20364138
esv1010146 OTHER inversion 20482838
esv2661870 CNV deletion 23128226
esv2668718 CNV deletion 23128226
esv2750078 CNV deletion 23290073
esv2750079 CNV deletion 23290073
esv2750080 CNV deletion 23290073
esv3581841 CNV loss 25503493
esv3637349 CNV loss 21293372
esv3637351 CNV loss 21293372
nsv1113738 CNV deletion 24896259
nsv1131217 CNV deletion 24896259
nsv1141674 CNV deletion 24896259
nsv1681 CNV deletion 18451855
nsv510408 OTHER sequence alteration 20534489
nsv570579 CNV loss 21841781
nsv827449 CNV gain 20364138
nsv94578 CNV deletion 16902084

Additional Variant Information for NR2F2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NR2F2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NR2F2-AS1 Gene

Disorders for NR2F2-AS1 Gene

Additional Disease Information for NR2F2-AS1

No disorders were found for NR2F2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NR2F2-AS1 Gene

Publications for NR2F2-AS1 Gene

  1. Genome-wide meta-analysis identifies new susceptibility loci for migraine. (PMID: 23793025) Anttila V … Palotie A (Nature genetics 2013) 3 58
  2. Family-based genome-wide association study of frontal θ oscillations identifies potassium channel gene KCNJ6. (PMID: 22554406) Kang SJ … Porjesz B (Genes, brain, and behavior 2012) 3 58
  3. Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls. (PMID: 17554300) Wellcome Trust Case Control Consortium (Nature 2007) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for NR2F2-AS1 Gene

Sources for NR2F2-AS1 Gene

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