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Aliases for NR2F1-AS1 Gene

Subcategory (RNA class) for NR2F1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NR2F1-AS1 Gene

  • NR2F1 Antisense RNA 1 2 3 5

External Ids for NR2F1-AS1 Gene

Previous GeneCards Identifiers for NR2F1-AS1 Gene

  • GC05M092747

Summaries for NR2F1-AS1 Gene

GeneCards Summary for NR2F1-AS1 Gene

NR2F1-AS1 (NR2F1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NR2F1-AS1 Gene

Genomics for NR2F1-AS1 Gene

Regulatory Elements for NR2F1-AS1 Gene

Enhancers for NR2F1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05G093606 1.5 Ensembl ENCODE dbSUPER 13.3 -21.9 -21939 1.4 PKNOX1 FOXA2 FEZF1 ZNF2 FOS ZNF263 TSHZ1 REST PPARG NFIL3 NR2F1 NR2F1-AS1 ENSG00000278905 MIR2277
GH05G093576 1.8 FANTOM5 ENCODE dbSUPER 10.9 +4.0 4033 10.1 MLX FEZF1 YY1 ZNF416 ZNF143 ZNF548 ZNF263 SP3 NFYC ZFP41 NPM1P27 MIR2277 NR2F1-AS1 ENSG00000251023 NR2F1 PIR38533
GH05G093563 1.3 Ensembl ENCODE dbSUPER 12.6 +21.1 21060 2.3 ELF3 FOXA2 ZSCAN9 RARA FOS RELB CREM THAP11 MIXL1 ZNF362 NR2F1-AS1 MIR2277 NR2F1 PIR38533
GH05G093188 2.4 VISTA ENCODE 5.9 +394.1 394052 5.5 ELF3 FOXA2 INSM2 FEZF1 BRCA1 RARA SCRT2 FOS EGR2 ZNF362 NR2F1-AS1 GC05P093190 POLD2P1
GH05G093357 1.2 Ensembl ENCODE 11.1 +226.3 226275 3.3 PKNOX1 FEZF1 YY1 GATA2 FOS ZNF263 YY2 TSHZ1 SMARCB1 ZNF518A NR2F1-AS1 GC05P093406 POLD2P1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NR2F1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NR2F1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000184048 -1653 200 CBX8 RNF2 SUZ12 CBX2 EZH2

Genomic Location for NR2F1-AS1 Gene

Chromosome:
5
Start:
93,409,356 bp from pter
End:
93,585,648 bp from pter
Size:
176,293 bases
Orientation:
Minus strand

Genomic View for NR2F1-AS1 Gene

Genes around NR2F1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NR2F1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NR2F1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NR2F1-AS1 Gene

Proteins for NR2F1-AS1 Gene

Post-translational modifications for NR2F1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NR2F1-AS1 Gene

Domains & Families for NR2F1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NR2F1-AS1 Gene

Function for NR2F1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NR2F1-AS1 Gene

Localization for NR2F1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NR2F1-AS1 Gene

Pathways & Interactions for NR2F1-AS1 Gene

SuperPathways for NR2F1-AS1 Gene

No Data Available

Interacting Proteins for NR2F1-AS1 Gene

Gene Ontology (GO) - Biological Process for NR2F1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NR2F1-AS1 Gene

Drugs & Compounds for NR2F1-AS1 Gene

No Compound Related Data Available

Transcripts for NR2F1-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for NR2F1-AS1 Gene

No ASD Table

Relevant External Links for NR2F1-AS1 Gene

GeneLoc Exon Structure for
NR2F1-AS1
ECgene alternative splicing isoforms for
NR2F1-AS1

Expression for NR2F1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NR2F1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NR2F1-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.4) and Brain - Anterior cingulate cortex (BA24) (x4.1).
genes like me logo Genes that share expression patterns with NR2F1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NR2F1-AS1 Gene

Orthologs for NR2F1-AS1 Gene

Evolution for NR2F1-AS1 Gene

ENSEMBL:
Gene Tree for NR2F1-AS1 (if available)
TreeFam:
Gene Tree for NR2F1-AS1 (if available)

No data available for Orthologs for NR2F1-AS1 Gene

Paralogs for NR2F1-AS1 Gene

No data available for Paralogs for NR2F1-AS1 Gene

Variants for NR2F1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NR2F1-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000002005 -- 93,469,504(+) TCATA(A/G)GAAAA intron-variant
rs1000033369 -- 93,469,700(+) ATACT(C/T)GAACC intron-variant
rs1000047708 -- 93,516,694(+) GATGT(G/T)CTGAC intron-variant
rs1000061679 -- 93,583,209(+) CGCGC(A/T)GATCC upstream-variant-2KB
rs1000065108 -- 93,471,896(+) TTAAC(C/T)AATAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NR2F1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv954n67 CNV gain 20364138
nsv1074856 CNV deletion 25765185
nsv4918 CNV deletion 18451855
nsv830402 CNV gain 17160897
nsv830404 CNV loss 17160897

Relevant External Links for NR2F1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NR2F1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NR2F1-AS1 Gene

Disorders for NR2F1-AS1 Gene

Relevant External Links for NR2F1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NR2F1-AS1

No disorders were found for NR2F1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NR2F1-AS1 Gene

Publications for NR2F1-AS1 Gene

  1. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. (PMID: 23583100) Ramos A.D. … Lim D.A. (Cell Stem Cell 2013) 2 3 64
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NR2F1-AS1 Gene

Sources for NR2F1-AS1 Gene

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