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Aliases for NR2F1-AS1 Gene

Subcategory (RNA class) for NR2F1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NR2F1-AS1 Gene

  • NR2F1 Antisense RNA 1 2 3 5

External Ids for NR2F1-AS1 Gene

Previous GeneCards Identifiers for NR2F1-AS1 Gene

  • GC05M092747

Summaries for NR2F1-AS1 Gene

GeneCards Summary for NR2F1-AS1 Gene

NR2F1-AS1 (NR2F1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NR2F1-AS1 Gene

Genomics for NR2F1-AS1 Gene

Regulatory Elements for NR2F1-AS1 Gene

Enhancers for NR2F1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F093576 1.5 FANTOM5 ENCODE 10.9 +4.0 4033 10.1 PKNOX1 MLX ARID4B SIN3A FEZF1 ZNF2 ZNF302 ZNF416 ZNF143 ZNF548 NPM1P27 ENSG00000272406 POU5F2 MIR2277 NR2F1-AS1 ENSG00000251023 NR2F1 PIR38533
GH05F093606 1.2 Ensembl ENCODE 13.3 -22.0 -21990 1.5 PKNOX1 FEZF1 ZNF2 FOS ZNF263 REST TSHZ1 PPARG NFIL3 CBX8 NR2F1 NR2F1-AS1 ENSG00000278905 NPM1P27
GH05F093188 2.6 VISTA Ensembl ENCODE 5.9 +394.1 394052 5.5 ELF3 INSM2 FEZF1 BRCA1 RARA SCRT2 FOS EGR2 ZNF362 CEBPB NPM1P27 NR2F1-AS1 GC05P093190 POLD2P1
GH05F093563 1.1 Ensembl ENCODE 12.6 +21.1 21060 2.3 ELF3 ZSCAN9 RARA FOS CREM THAP11 MIXL1 ZNF362 CEBPB JUNB NR2F1-AS1 MIR2277 NR2F1 PIR38533
GH05F094110 1.1 ENCODE 11.5 -525.8 -525771 2.2 PKNOX1 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143 KLF13 ZNF263 NR2F1-AS1 LOC105379087 ENSG00000251023
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NR2F1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NR2F1-AS1 Gene

Chromosome:
5
Start:
93,409,356 bp from pter
End:
93,585,648 bp from pter
Size:
176,293 bases
Orientation:
Minus strand

Genomic View for NR2F1-AS1 Gene

Genes around NR2F1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NR2F1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NR2F1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NR2F1-AS1 Gene

Proteins for NR2F1-AS1 Gene

Post-translational modifications for NR2F1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NR2F1-AS1 Gene

Domains & Families for NR2F1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NR2F1-AS1 Gene

Function for NR2F1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NR2F1-AS1 Gene

Localization for NR2F1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NR2F1-AS1 Gene

Pathways & Interactions for NR2F1-AS1 Gene

SuperPathways for NR2F1-AS1 Gene

No Data Available

Interacting Proteins for NR2F1-AS1 Gene

Gene Ontology (GO) - Biological Process for NR2F1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NR2F1-AS1 Gene

Transcripts for NR2F1-AS1 Gene

Alternative Splicing Database (ASD) splice patterns (SP) for NR2F1-AS1 Gene

No ASD Table

Relevant External Links for NR2F1-AS1 Gene

GeneLoc Exon Structure for
NR2F1-AS1
ECgene alternative splicing isoforms for
NR2F1-AS1

Expression for NR2F1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NR2F1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NR2F1-AS1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x4.4) and Brain - Anterior cingulate cortex (BA24) (x4.1).
genes like me logo Genes that share expression patterns with NR2F1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NR2F1-AS1 Gene

Orthologs for NR2F1-AS1 Gene

Evolution for NR2F1-AS1 Gene

ENSEMBL:
Gene Tree for NR2F1-AS1 (if available)
TreeFam:
Gene Tree for NR2F1-AS1 (if available)

No data available for Orthologs for NR2F1-AS1 Gene

Paralogs for NR2F1-AS1 Gene

No data available for Paralogs for NR2F1-AS1 Gene

Variants for NR2F1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NR2F1-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10042892 -- 93,567,876(+) ATGAA(C/T)GTTTT intron-variant
rs10043203 -- 93,433,255(+) GTTTT(C/T)TCCTT intron-variant
rs10055670 -- 93,530,035(+) TCTAA(C/T)TTAGA intron-variant
rs10057092 -- 93,440,175(+) tctct(C/T)gctcg intron-variant
rs10058017 -- 93,581,852(+) ctctc(C/T)Cctct upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NR2F1-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv830404 CNV loss 17160897
nsv830402 CNV gain 17160897
nsv4918 CNV deletion 18451855
nsv1074856 CNV deletion 25765185
dgv954n67 CNV gain 20364138

Relevant External Links for NR2F1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NR2F1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NR2F1-AS1 Gene

Disorders for NR2F1-AS1 Gene

Relevant External Links for NR2F1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NR2F1-AS1

No disorders were found for NR2F1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NR2F1-AS1 Gene

Publications for NR2F1-AS1 Gene

  1. Integration of genome-wide approaches identifies lncRNAs of adult neural stem cells and their progeny in vivo. (PMID: 23583100) Ramos A.D. … Lim D.A. (Cell Stem Cell 2013) 2 3 64
  2. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NR2F1-AS1 Gene

Sources for NR2F1-AS1 Gene

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