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NR1I3 Gene

protein-coding   GIFtS: 61

GC01M161199
nuclear receptor subfamily 1, group I, member 3
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
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Aliases & Descriptions
nuclear receptor subfamily 1, group I, member 31 2     Constitutive active response2 3
CAR1 2 3     constitutive active receptor2
MB671 2     MGC972092
CAR11 2     nuclear receptor subfamily 1 group I member 32
Constitutive activator of retinoid response2 3     MGC1504332
Orphan nuclear receptor MB672 3     orphan nuclear hormone receptor2
Constitutive androstane receptor2 3     MGC971442

External Ids:    HGNC: 79691   Entrez Gene: 99702   Ensembl: ENSG000001432577   UniProtKB: Q149943   

Search outside databases for aliases for NR1I3 gene

Previous GC identifers: GC01M158910 GC01M156931 GC01M157978 GC01M158416 GC01M158012 GC01M159466

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for NR1I3:
This gene encodes a member of the nuclear receptor superfamily, and is a key regulator of xenobiotic and endobiotic
metabolism. The protein binds to DNA as a monomer or a heterodimer with the retinoid X receptor and regulates the
transcription of target genes involved in drug metabolism and bilirubin clearance, such as cytochrome P450 family
members. Unlike most nuclear receptors, this transcriptional regulator is constitutively active in the absence of
ligand but is regulated by both agonists and inverse agonists. Ligand binding results in translocation of this protein
to the nucleus, where it activates or represses target gene transcription. These ligands include bilirubin, a variety
of foreign compounds, steroid hormones, and prescription drugs. Multiple transcript variants encoding different
isoforms have been found for this gene. (provided by RefSeq)

UniProtKB/Swiss-Prot: NR1I3_HUMAN, Q14994
Function: Binds and transactivates the retinoic acid response elements that control expression of the retinoic acid
receptor beta 2 and alcohol dehydrogenase 3 genes. Transactivates both the phenobarbital responsive element module of
the human CYP2B6 gene and the CYP3A4 xenobiotic response element

Gene Wiki entry for NR1I3 (Constitutive androstane receptor)
(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC and Ensembl (release 56), Regulatory elements and Epigenetics data according to SABiosciences)
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Regulatory elements:
"" SABiosciences Regulatory transcription factor binding sites in the NR1I3 gene upstream (promoter) region "":
PPAR-gamma2   PPAR-gamma1   COUP-TF1   HNF-4alpha2   CUTL1   RFX1   YY1   GR-beta   GR-alpha   Bach1   

Epigenetics:
"" Search SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for NR1I3 ""

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q23.3   Ensembl cytogenetic band:  1q23.3   HGNC cytogenetic band: 1q23.3

NR1I3 Gene in genomic location: bands according to Ensembl, locations according to "" (and/or Entrez Gene and/or Ensembl if different)
""

GeneLoc gene densities for chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01M161199:  view genomic region     (about GC identifiers)

Start:
161,199,456 bp from pter
End:
161,208,000 bp from pter
Size:
8,545 bases
Orientation:
minus strand
RefSeq DNA sequence:
NC_000001.10  NT_004487.19  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene, Novus Biologicals, and/or Sino Biological,
Biochemical Assays by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 May 2010 and Entrez Gene, Antibodies by Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abnova, OriGene, Novus Biologicals, and/or Epitomics)
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UniProtKB/Swiss-Prot: NR1I3_HUMAN, Q14994 (See protein sequence)
Recommended Name: Nuclear receptor subfamily 1 group I member 3  
Size: 352 amino acids; 39942 Da
Subunit: Heterodimer of NR1I3 and RXR. Interacts with PSMC4
Subcellular location: Nucleus (By similarity)
PDB structure from "" and Proteopedia "" :
1XV9 (3D) ""    1XVP (3D) ""    
Secondary accessions: Q5VTW5 Q5VTW6
Alternative splicing: 2 isoforms:  Q14994-1   Q14994-2   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (15 alternative transcripts): 
    NP_001070937.1  NP_001070938.1  NP_001070939.1  NP_001070940.1  NP_001070941.1  NP_001070942.1  NP_001070943.1  NP_001070944.1  
    NP_001070945.1  NP_001070946.1  NP_001070947.1  NP_001070948.1  NP_001070949.1  NP_001070950.1  NP_005113.1  


    ENSEMBL proteins: 
    ENSP00000356961 ENSP00000356958 ENSP00000412672 ENSP00000406493 ENSP00000399361 ENSP00000407446 
    ENSP00000356960 ENSP00000356959 ENSP00000356962 ENSP00000356965 ENSP00000356963 


    Human Recombinant Proteins 
    ""Browse Purified and Recombinant Proteins at Millipore
    ""Browse Human Recombinant Proteins at Sigma-Aldrich
    "" Browse R&D Systems for human recombinant proteins
    ""Browse recombinant and purified proteins available from Enzo Life Sciences
    ""HuPro® and/or Recombinant Proteins from Abnova for NR1I3 ""
    "" Origene Purified Recombinant Human Protein: NR1I3
    ""Novus Biologicals Proteins for NR1I3  ""
    ""Browse Sino Biological Recombinant Proteins  ""

    2 Gene Ontology (GO) cellular component terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IEA--
    GO:0005829 cytosol ----
    About this table

    "" NR1I3 for ontologies           About GeneDecksing



    Antibodies for NR1I3: 
    ""Millipore Mono- and Polyclonal Antibodies for the study of NR1I3
    ""Sigma-Aldrich Antibodies for NR1I3
    ""R&D Systems Antibodies for NR1I3 (CAR/NR1I3)
    ""Monoclonal and Polyclonal Antibodies from Abnova (NR1I3)
    ""Browse Origene Antibodies ""
    ""Novus Biologicals Antibodies for NR1I3
    ""Browse antibodies at Epitomics

    Assays for NR1I3: 
    ""Browse Kits and Assays available from Millipore
    ""Browse ELISAs at Sigma-Aldrich
    "" Browse R&D Systems for biochemical assays
    ""Browse Enzo Life Sciences for kits & assays

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

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    "" NR1I3 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6 ):
     IPR013088 Znf_NHR/GATA
     IPR008946 Nucl_hormone_rcpt_ligand-bd
     IPR000536 Nucl_hrmn_rcpt_lig-bd_core
     IPR001628 Znf_hrmn_rcpt
     IPR001723 Str_hrmn_rcpt

    Graphical View of Domain Structure for InterPro Entry Q14994

    ProtoNet protein and cluster: Q14994

    2 Blocks protein families:
    IPB000324 Vitamin D receptor signature
    IPB001723 Steroid hormone receptor signature


    UniProtKB/Swiss-Prot: NR1I3_HUMAN, Q14994
    Domain: Composed by a short N-terminal domain followed by the DNA binding, hinge, and ligand binding/dimerization
    domains
    Similarity: Belongs to the nuclear hormone receptor family. NR1 subfamily
    Similarity: Contains 1 nuclear receptor DNA-binding domain

    (According to MGI May 08 2010, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Millipore, Abnova, siRNAs from Applied Biosystems, Sigma-Aldrich, Clones from Millipore, Sigma-Aldrich, OriGene, Sino Biological, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene.)
    About This Section

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    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Abnova Chimera RNAi Products for Gene knock-down (NR1I3)
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 15): NR1I3
    Origene shRNA RFP (see all 15): NR1I3
    Origene basic RS shRNA (see all 15): NR1I3

    ""Applied Biosystems Silencer® siRNAs for NR1I3
    ""Sigma-Aldrich siRNA Panels and siRNA for NR1I3
    Sigma-Aldrich shRNA Panels and shRNA for NR1I3
    Explore Sigma-Aldrich super-pooled esiRNAs
    Clones:""Browse Clones for the Expression of Recombinant Proteins Available from Millipore
    ""Browse iPSC Reprogramming Factors at Sigma-Aldrich
    "" Origene GFP tagged cDNA clones in CMV expression vector (see all 15): NR1I3
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 15): NR1I3
    Origene untagged cDNA clones in CMV expression vector (see all 15): NR1I3
    ""Browse Sino Biological Human cDNA Clones  ""

    UniProtKB/Swiss-Prot: NR1I3_HUMAN, Q14994
    Function: Binds and transactivates the retinoic acid response elements that control expression of the retinoic acid
    receptor beta 2 and alcohol dehydrogenase 3 genes. Transactivates both the phenobarbital responsive element module of
    the human CYP2B6 gene and the CYP3A4 xenobiotic response element
    Induction: By dexamethasone

    Genatlas biochemistry entry for NR1I3:
    nuclear receptor subfamily 1,group I,member 3,putatively heterodimerizing with RXR(s),expressed as several isoforms

    5/10 Gene Ontology (GO) molecular function terms (GO ID links to tree view) (see all 10 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003677 DNA binding TAS9783588
    GO:0003700 transcription factor activity IEA--
    GO:0003707 steroid hormone receptor activity ----
    GO:0003713 transcription coactivator activity TAS9783588
    GO:0004879 ligand-dependent nuclear receptor activity TAS8114692
    About this table

    "" NR1I3 for ontologies           About GeneDecksing

    Animal Models: 5 MGI mutant phenotypes (inferred from 7 alleles""(MGI details for Nr1i3):

    growth/sizehomeostasis/metabolismlife span-post-weaning/agingliver/biliary systemreproductive system

    "" NR1I3 for phenotypes           About GeneDecksing

    (Pathways according to Millipore, Cell Signaling Technology, Sigma-Aldrich, Applied Biosystems GeneAssist, KEGG and/or UniProtKB, (map by GeneGo),
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 May 2010 via Entrez Gene).
    About This Section

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    "" NR1I3 for pathways           About GeneDecksing

    1 "" Millipore Pathway for NR1I3
      ""  Selected targets of GCR-alpha

    3 "" Sigma-Aldrich "Your Favorite Gene" Pathways for  NR1I3  (Your Favorite Gene powered by Ingenuity)
      ""  LPS/IL-1 Mediated Inhibition of RXR Function
    PXR/RXR Activation
    Xenobiotic Metabolism Signaling

    "" SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NR1I3

    5/32 Interacting proteins for NR1I3 (ENSP000003569583 Q149941) via UniProtKB, MINT, and/or STRING (carddisp.pl?gene=NR1I3&search=CAR&rf=/home/genecards/current/website/CARddisp.pl&interactions=32&suff=txt#int">see all 32 ""
    InteractantInteraction Details
    GeneCardExternal ID(s)
    CHD9Q3L8U1-31EBI-960794,EBI-960730
    CYP1A2ENSP000003420073STRING: ENSP00000342007
    NCOR1ENSP000002687123STRING: ENSP00000268712
    NCOR2ENSP000003485513STRING: ENSP00000348551
    NR0B1ENSP000003682533STRING: ENSP00000368253
    About this table

    3 Gene Ontology (GO) biological process terms (GO ID links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006355 regulation of transcription, DNA-dependent IEA--
    GO:0007165 signal transduction TAS8020947 9783588
    GO:0016481 negative regulation of transcription ----
    About this table

    "" NR1I3 for ontologies           About GeneDecksing


    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

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    "" NR1I3 for compounds           About GeneDecksing

    "" Enzo Life Sciences drugs & compounds for NR1I3
    ""Sigma-Aldrich Small Molecules for NR1I3:
    Small Molecule - Allosteric Modulator

    "" Compounds for NR1I3 available from Tocris Bioscience
    CompoundAction CAS number
    CITCOSelective CAR agonist
    About this table


    10/216 ""Novoseek chemical compound relationships for NR1I3 gene (see all 216 )
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    tcpobop 100.00 84 16799968 (5), 17948939 (4), 17314319 (4), 15563456 (4) (see all 47)
    androstane 100.00 629 16635107 (4), 11518807 (4), 18457031 (3), 14963109 (3) (see all 100)
    phenobarbital 100.00 225 19708687 (7), 12124310 (7), 10454578 (7), 17904175 (6) (see all 100)
    citco 45.37 15 19588937 (2), 15990349 (2), 20185760 (1), 19202563 (1) (see all 13)
    androstanol 40.56 14 12554751 (2), 18692084 (1), 18474683 (1), 17948939 (1) (see all 13)
    androstenol 35.86 15 12807759 (3), 11457660 (3), 17962186 (1), 16929008 (1) (see all 11)
    bilirubin 24.63 44 17108061 (5), 15464257 (5), 14702117 (5), 12644704 (5) (see all 18)
    oltipraz 20.24 14 18474683 (6), 18418891 (5), 19144771 (1), 18488193 (1) (see all 5)
    pregnenolone 16alpha-carbonitrile 17.88 12 15596064 (2), 19845433 (1), 19162173 (1), 19144771 (1) (see all 11)
    diallylsulfide 14.07 10 17353348 (6), 19695238 (1), 19144771 (1), 16679304 (1) (see all 5)
    About this table

    2 PharmGKB drug compound relationships for NR1I3 gene
    Drug compound PharmGKB Relations PubMed IDs for articles supporting these relationships
    vitamin dFA  11991950
    xenobioticsFA  GN  15194709 12464260
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 223 Homo sapiens; Apr 2 2010) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Millipore and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene, microRNA from SABiosciences,
    Tagged/untagged cDNA clones from OriGene, Primers from OriGene and/or SABiosciences,
    Expression Assays from Applied Biosystems)
    About This Section

      User Feedback
    Inhib.
    RNA:
    ""Browse for Gene Knock-down Tools from Millipore
    ""Abnova Chimera RNAi Products for Gene knock-down (NR1I3)
    ""Applied Biosystems Silencer® siRNAs:  NM_001077469  NM_001077470  NM_001077471  NM_001077472  NM_001077473  NM_001077474  NM_001077475  NM_001077476  
    NM_001077477  NM_001077478  NM_001077479  NM_001077480  NM_001077481  NM_001077482  NM_005122  
    "" Origene 29mer shRNA kits in GFP-retroviral vector (see all 15): NR1I3
    Origene shRNA RFP (see all 15): NR1I3
    Origene basic RS shRNA (see all 15): NR1I3

    ""Sigma-Aldrich siRNA Panels and siRNA for NR1I3
    Sigma-Aldrich shRNA Panels and shRNA for NR1I3
    Explore Sigma-Aldrich super-pooled esiRNAs

    microRNA:""Search SABiosciences for microRNAs that regulate NR1I3: ""
    Assays:  ""Applied Biosystems TaqMan® Gene Expression Assays:  
    NM_001077469  NM_001077470  NM_001077471  NM_001077472  NM_001077473  NM_001077474  NM_001077475  NM_001077476  
    NM_001077477  NM_001077478  NM_001077479  NM_001077480  NM_001077481  NM_001077482  NM_005122  


    Clones:"" Origene GFP tagged cDNA clones in CMV expression vector (see all 15): NR1I3
    Origene Myc/DDK tagged cDNA clones in CMV expression vector (see all 15): NR1I3
    Origene untagged cDNA clones in CMV expression vector (see all 15): NR1I3
    Primers:"" Origene genome-wide validated SYBR primer pairs: NR1I3
    ""SABiosciences RT2 qPCR Primer Assay for NR1I3: PPH01278A ""

    REFSEQ mRNAs for NR1I3 gene (15 alternative transcripts): 

    NM_001077469.1  NM_001077470.1  NM_001077471.1  NM_001077472.1  NM_001077473.1  NM_001077474.1  NM_001077475.1  NM_001077476.1  
    NM_001077477.1  NM_001077478.1  NM_001077479.1  NM_001077480.1  NM_001077481.1  NM_001077482.1  NM_005122.3  

    Additional cDNA sequence: 

    AB307702.1 AK303757.1 AK303796.1 AK310773.1 AK316208.1 AY572806.1 AY572808.1 AY572810.1 
    AY572811.1 AY572812.1 AY572813.1 AY572816.1 AY572817.1 AY572818.1 AY572819.1 AY572820.1 
    AY572821.1 AY572822.1 AY572823.1 AY572824.1 AY572825.1 AY572827.1 BC069626.1 BC121120.1 
    BC121121.1 DQ022681.1 

    14 DOTS entries:

    DT.121424716  DT.118470  DT.95212776  DT.75101308  DT.121424516  DT.121424730  DT.121424744  DT.121424507 
    DT.121424513  DT.121424575  DT.91855775  DT.75170204  DT.91931603  DT.97809200 

    24/70 AceView cDNA sequences (see all 70 ):

    CB124867 AI262949 AY572818 AY572809 AY572806 AY572808 AA918394 AY572815 
    AY572817 BM719939 AY572823 AY572813 BC069626 AY572816 AV652750 AY572820 
    AV652653 AY572821 AY572826 AY572814 AY572807 AY572827 AV652691 CB157668 

    "" highest scoring ESTs for NR1I3:

    AL698144 BC069626 BG400160 CB124867 Z30425 AA679391 AA953989 AI086203 AI222584 AI240710 

    Unigene Cluster for NR1I3:

    Nuclear receptor subfamily 1, group I, member 3
    Hs.349642  [show with all ESTs]
    Unigene Representative Sequence: AK303757


    GeneLoc Exon Structure

    5/12 Alternative Splicing Database (ASD) splice patterns (SP) for NR1I3 (see all 12 )

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10
    SP1:                                                              -           -         
    SP2:                                                  -                       -         
    SP3:                                                  -     -     -           -         
    SP4:        -     -                                                           -         
    SP5:        -     -                                   -                       -         

    About this scheme

    ECgene alternative splicing isoforms for NR1I3

    16 Ensembl transcripts including schematic representations:
    ENST00000367982  ENST00000367979  ENST00000491193  ENST00000488651  ENST00000464422  ENST00000479324  
    ENST00000483482  ENST00000428574  ENST00000442691  ENST00000412844  ENST00000437437  ENST00000367981  
    ENST00000367980  ENST00000367983  ENST00000367985  ENST00000367984  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 223 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems, Primers from OriGene and/or SABiosciences )
    About This Section

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    NR1I3 expression in normal and diseased human tissues

    "" Applied Biosystems TaqMan ® Gene Expression Assays for NR1I3

    1""  / 2""  / 3""

    4 probe-sets matching NR1I3 gene

    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank
    105_at2, 3 U95-A 1 1.00 1.00 1.00 1.00 Z30425 0.80 1.00 0.91 1
    207007_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005122 0.60 1.00 0.82 1
    207007_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    1570188_at2 U133Plus2 1 0.46 1.00 -- -- -- -- -- -- --
    About this table

    "" NR1I3 for expression           About GeneDecksing

    Data from Genenote  (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GCCCTCTTCT

    SOURCE GeneReport for Unigene cluster: Hs.349642

    Expression variation in blood from EXPOLDB for NR1I3

    UniProtKB/Swiss-Prot: NR1I3_HUMAN, Q14994
    Tissue specificity: Predominantly expressed in liver

    Primers:"" Origene genome-wide validated SYBR primer pairs: NR1I3 ""
    ""SABiosciences RT2 qPCR Primer Assay for NR1I3: PPH01278A ""
    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI May 08 2010, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section

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    Orthologs for NR1I3 gene from 4 species
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    NR1I31   -- nuclear receptor subfamily 1, group I, member 3 86.07(n)
    85.01(a)
    488653  XM_545770.2  XP_545770.2 
    chimpanzee
    (Pan troglodytes)
    NR1I31   -- nuclear receptor subfamily 1, group I, member 3 99.81(n)
    99.71(a)
    458014  XM_514444.2  XP_514444.2 
    rat
    (Rattus norvegicus)
    Nr1i31   -- nuclear receptor subfamily 1, group I, member 3 81.47(n)
    79.71(a)
    65035  NM_022941.2  NP_075230.1 
    mouse
    (Mus musculus)
    Nr1i31, 5 1 (92.60 cM)5
    nuclear receptor subfamily 1, group I, member 31, 5 80.75(n)1
    74.71(a)1
    123551  NM_009803.31  NP_033933.21 
     AA2099885  AF0093265  (see all 13)
    About this table        Species with no ortholog for NR1I3

    ENSEMBL Gene Tree for NR1I3
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

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    Paralogs for NR1I3 gene
    VDR2  PPARD2  NR1I22  RARG2  PPARA2  THRB2  RARA2  NR1H42  
    RARB2  NR1D22  RORA2  RORB2  RORC2  NR1D12  PPARG2  NR1H22  
    THRA2  NR1H32  

    "" NR1I3 for paralogs           About GeneDecksing


    (SNPs according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Genotyping Reagents from Applied Biosystems)
    About This Section

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    10/25 NCBI SNPs in NR1I3 are shown (see all 25 )
    (Click "" for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 70)
    ABGenomic DataTranscription Related DataAllele Frequencies
    SNP IDValidChr 1 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs25028041,2
    C,F,A,H132566439(+) acacaG/CaGAGA 15 -- ng51""5Minor allele frequency- C:0.47NA EA 168""
    ""
    rs25028051,2
    C,F,O,A132566799(+) ttacaC/Tagata 15 -- ng51""17Minor allele frequency- N:0.00NS EA NA 1220""
    --
    rs23074171,2
    C,F132556358(-) GGGGAA/TAGTGG 15 -- ng31""1Minor allele frequency- T:0.01NA 170""
    ""
    rs23074241,2
    C,F,O,A,H161202605(-) CTGCCC/TGTCTT 30 P ref1 syn1 ese3""40Minor allele frequency- T:0.36NA EA NS MN WA 4784""
    ""
    rs23074251,2
    C,F161203118(-) CTGTCG/AGCAGA 30 /S syn1 ref1 ese3""10Minor allele frequency- A:0.00NA NS EA MN 994""
    --
    rs25018721,2
    C,F,A,H132562123(-) tactcG/Aggagg 15 -- int1""3Minor allele frequency- A:0.50NA 8""
    --
    rs25018741,2
    C,F,A,H132561366(-) TGAGGC/TCAGGA 15 -- int1""6Minor allele frequency- T:0.43NA WA 130""
    ""
    rs30035961,2
    C,F,A,H132561157(+) GATCAG/AACCAA 15 -- int1""14Minor allele frequency- A:0.49NS EA NA WA 1046""
    ""
    rs25018731,2
    C,F,A,H132561478(-) CTCACA/GGAAGT 15 -- int1""13Minor allele frequency- G:0.42NS EA NA WA 1050""
    ""
    rs23074261,2
    C,F,O132563174(-) CCCCAA/GTGGAA 15 -- int1""11Minor allele frequency- G:0.01NA NS EA 932""
    About this table

    HapMap Linkage Disequilibrium images for NR1I3 (up to first 250kb)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)  ""
          Database of Genomic Variants (DGV) variations for NR1I3: --

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, LSDB, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
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    "" NR1I3 for disorders           About GeneDecksing

    OMIM: 603881

    10/67 ""Novoseek disease relationships for NR1I3 gene (see all 67 )

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    nuclear accumulation 20.02 17 15591315 (3), 19895823 (2), 11861787 (2), 10454578 (2) (see all 12)
    cholestasis 7.12 13 15684063 (3), 16565602 (2), 19925451 (1), 19433268 (1) (see all 10)
    hepatotoxicity 6.47 13 16109766 (2), 15358766 (2), 12376703 (2), 18457366 (1) (see all 10)
    hyperplasia; liver 6.42 3 18798339 (2), 16231353 (1)
    tumor promotion 5.29 6 15492232 (2), 20404936 (1), 18925944 (1), 18187584 (1) (see all 5)
    stage iii nsclc 4.95 4 12738723 (4)
    hypertrophy; liver 3.68 2 19378387 (1), 18187584 (1)
    cholestasis intrahepatic 3.41 4 19433268 (1), 19196849 (1), 16550034 (1), 15382119 (1)
    arthritis chronic 2.81 3 17455111 (2), 17108061 (1)
    cirrhosis, familial 2.62 1 16550034 (1)
    About this table

    Human Gene Mutation Database: NR1I3
    Human Genome Epidemiology Navigator: NR1I3 (4 documents)

    (Possibly Related Articles in Doctor's Guide)
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      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
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    93/331 PubMed articles for NR1I3 gene (see all 331 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Search String
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 9970 HGNC: 7969 AceView: NR1I3 Ensembl:ENSG00000143257 euGenes: HUgn9970
    ECgene: NR1I3 H-InvDB: NR1I3
    (According to HUGE)
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      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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      --
    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from XenneX, Inc.)
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    Patent Information for NR1I3 gene: ""
    Search GeneIP for patents involving NR1I3

    GeneCards and IP: ""
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search


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