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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

NPY6R Gene

pseudogene GIFtS: 41
GCID: GC05P137171

neuropeptide Y receptor Y6 (pseudogene)

Explore 1 disease affiliated with
NPY6R via

MalaCards

our new
Human Malady Compendium

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

This gene clusters with an RNA gene
Subcategory (RNA class): lncRNA

Quality score for the ORGUL clustered with this gene is 5

Aliases
Neuropeptide Y Receptor Y6 (Pseudogene)¹ ²		NPY6-R³
PP2¹ ² ³ ⁵		NPY Y1-Like Receptor³
NPY1RL¹ ² ³		Putative Pancreatic Polypeptide Receptor 2³
Y2B² ³

External Ids:	HGNC: 7959¹	Entrez Gene: 4888²	Ensembl: ENSG00000226306⁷	OMIM: 601770⁵	UniProtKB: Q99463³

ORGUL members:	fRNAdb¹⁰:FR064641
	NCBI:XR_000088
	NONCODE:n340643 n405560
	RNAdb:LIT2069

Export aliases for NPY6R gene to outside databases

Previous GC identifers: GC05P137018 GC05P137816 GC05P137174 GC05P137213 GC05P137220 GC05P132328

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: NPY6R_HUMAN, Q99463

Function: When expressed, is unable to bind pancreatic polypeptide (PP), neuropeptide Y (NPY), or peptide YY (PYY),

suggesting that either it is functionally inactive or that it may have acquired a pancreatic polypeptide-independent

function

Gene Wiki entry for NPY6R (Neuropeptide Y receptor Y6)

fRNAdb sequence ontology for NPY6R:
mature_transcript - A transcript which has undergone the necessary modifications, if any, for its function. In eukaryotes this includes, for example, processing of introns, cleavage, base modification, and modifications to the 5' and/or the 3' ends, other than addition of bases. In bacteria functional mRNAs are usually not modified.

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000005.9 NC_018916.1 NT_034772.6

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the NPY6R gene promoter:
Sp1 p53 AP-1 ATF-2 STAT3 STAT5A c-Jun
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for NPY6R

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPY6R

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 5q31.2 Ensembl cytogenetic band: 5q31.2 HGNC cytogenetic band: 5q31.2

NPY6R Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NPY6R gene location

GeneLoc information about chromosome 5 GeneLoc Exon Structure

GeneLoc location for GC05P137171: view genomic region (about GC identifiers)

Start:	137,136,882 bp from pter	End:	137,146,440 bp from pter
Size:	9,559 bases	Orientation:	plus strand

ORGUL member locations:
Legend (see complete legend)

n405560
FR0064641
n340643

lncRNA
Full Legend

137136881 137141660 137146439 chr5

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
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About This Section

UniProtKB/Swiss-Prot: NPY6R_HUMAN, Q99463 (See protein sequence)

Recommended Name: Putative neuropeptide Y receptor type 6

Size: 290 amino acids; 33180 Da

Subcellular location: Membrane; Multi-pass membrane protein (Potential)

Caution: Could be the product of a pseudogene. According to PubMed:8910290, PubMed:8910373 and PubMed:9013614, the

human NPY6R gene is an expressed pseudogene containing a premature stop codon and encoding a non-functional truncated

protein missing the last transmembrane domain. A single base pair deletion relative to the mouse ortholog, results in

a truncated protein lacking the seventh transmembrane domain

Secondary accessions: D3DQB4

Explore the universe of human proteins at neXtProt for NPY6R: NX_Q99463

Post-translational modifications:

View modification sites using PhosphoSitePlus²

View neXtProt modification sites for NX_Q99463

NPY6R Protein expression data from MOPED and PaxDb: --

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Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005887	integral to plasma membrane	TAS	8910373

NPY6R for ontologies About GeneDecksing

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(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

NPY6R for domains About GeneDecksing

4 InterPro domains/families:

IPR000986 NeuroY6_rcpt

IPR017452 GPCR_Rhodpsn_7TM

IPR000276 GPCR_Rhodpsn

IPR000611 NPY_rcpt

Graphical View of Domain Structure for InterPro Entry Q99463

ProtoNet protein and cluster: Q99463

UniProtKB/Swiss-Prot: NPY6R_HUMAN, Q99463

Similarity: Belongs to the G-protein coupled receptor 1 family

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

Function Summary:

UniProtKB/Swiss-Prot: NPY6R_HUMAN, Q99463

Function: When expressed, is unable to bind pancreatic polypeptide (PP), neuropeptide Y (NPY), or peptide YY (PYY),

suggesting that either it is functionally inactive or that it may have acquired a pancreatic polypeptide-independent

function

Genatlas biochemistry entry for NPY6R:

neuropeptide Y receptor Y6,expressed in pancreas,G protein coupled receptor superfamily

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Gene Ontology (GO): 1 molecular function term (GO ID links to tree view): About this table

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0004983	neuropeptide Y receptor activity	IEA	--

NPY6R for ontologies About GeneDecksing

Animal Models:
1 MGI mutant phenotype (inferred from 1 allele) (MGI details for Npy6r):

behavior/neurological

NPY6R for phenotypes About GeneDecksing

(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Unified GeneCards pathways About this table

See pathways by source

Super-pathway

contained gene-specific pathways

Neuropeptides signaling through G-protein alpha-i & G-protein alpha-q

Peptide GPCRs

0.46

Class A/1 (Rhodopsin-like receptors)

GPCRs, Class A Rhodopsin-like

0.41

2 BioSystems Pathways for NPY6R

	GPCRs, Class A Rhodopsin-like
	Peptide GPCRs

Interactions:

SABiosciences Gene Network Central^TM Interacting Genes and Proteins Network for NPY6R

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

Browse Small Molecules at EMD Millipore

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Search CenterWatch for drugs/clinical trials and news about NPY6R

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

Unigene Cluster for NPY6R:

Neuropeptide Y receptor Y6 (pseudogene)

Hs.643466 [show with all ESTs]

Unigene Representative Sequence: NR_002713

3 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000510937(uc011cyf.2) ENST00000503807 ENST00000412807

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Additional cDNA sequence:

AK297855.1 AK299427.1 NR_002713.3 U59431.1 U67780.1

2 DOTS entries:

DT.440836 DT.91790661

2 AceView cDNA sequences:

BF793417 AL600141

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

NPY6R expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: TATAAACCCT

About this image

NPY6R expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

1 LifeMap In Vivo Development Anatomical Compartment/Cell

Tissue

Anatomical Compartment

Cell

Category (developmental path)

Bone

Maxillary Process

Bone

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Genevestigator expression for NPY6R

SOURCE GeneReport for Unigene cluster: Hs.643466

UniProtKB/Swiss-Prot: NPY6R_HUMAN, Q99463

Tissue specificity: Expressed in heart, skeletal muscle, gastrointestinal tissues, spleen, brain and adrenal glands

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In Situ
Assay Products:

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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for NPY6R gene from 1 species (see representative species ) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Npy6r⁵	neuropeptide Y receptor Y6	--		18 (23.74 cM) 44270127

ENSEMBL Gene Tree for NPY6R (if available)
TreeFam Gene Tree for NPY6R (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 5 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs187344391^1,2		--	137135086(+)	`TCAAAA/TTTTAT`	1	--	us2k¹		0	--	--	--	--
rs116122652^1,2	F,	--	137135262(+)	`TTCCCT/AGCTCC`	1	--	us2k¹		1		WA	118
rs192071015^1,2		--	137135285(+)	`CCCAGA/CGATGC`	1	--	us2k¹		0	--	--	--	--
rs148899577^1,2		--	137135286(+)	`CCAGCA/GATGCT`	1	--	us2k¹		0	--	--	--	--
rs143573454^1,2		--	137135532(+)	`TCTCTC/TAATAT`	1	--	us2k¹		0	--	--	--	--
rs148033842^1,2		--	137135563(+)	`CTAGCC/TTTTGC`	1	--	us2k¹		0	--	--	--	--
rs182807319^1,2		--	137135581(+)	`CTATAC/TATGGA`	1	--	us2k¹		0	--	--	--	--
rs75761145^1,2	F,	--	137135777(+)	`CCATAG/ATACAC`	1	--	us2k¹		1		WA	118
rs187275647^1,2		--	137135778(+)	`CATAGC/TACACA`	1	--	us2k¹		0	--	--	--	--
rs17171590^1,2	C,F,H,	--	137135984(+)	`CCTTGG/ACTTAG`	1	--	us2k¹		14		NA NS EA WA	1322

HapMap Linkage Disequilibrium report for NPY6R (137136882 - 137146440 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NPY6R: --

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

NPY6R for disorders           About GeneDecksing

OMIM gene information: 601770
1 disease for NPY6R:    About MalaCards

pancreatitis

Export disorders for NPY6R gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for NPY6R gene integrated from 9 sources:
(articles sorted by number of sources associating them with NPY6R)

Utopia: connect your pdf to the dynamic
world of online information

Inactivation of a novel neuropeptide Y/peptide YY receptor gene in primate species. (PubMed id 8910290)^{1, 2, 3} Matsumoto M.... Yamaguchi T. (1996)
Molecular characterization of a second mouse pancreatic polypeptide receptor and its inactivated human homologue. (PubMed id 8910373)^{1, 2, 3} Gregor P....McCaleb M.L. (1996)
Molecular genetic analysis of a human neuropeptide Y receptor. The human homolog of the murine 'Y5' receptor may be a pseudogene. (PubMed id 9013614)^{1, 2} Rose P.M.... Fernandes P. (1997)
Neuropeptide Y receptor gene y6: multiple deaths or resurrections? (PubMed id 11027673)^{1, 9} Starback P....Larhammar D. (2000)
Neuropeptide Y-family receptors Y6 and Y7 in chicken. Cloning, pharmacological characterization, tissue distribution and conserved synteny with human chromosome region. (PubMed id 16640567)⁹ Bromee T....Larhammar D. (2006)
GR231118 (1229U91) and other analogues of the C-terminus of neuropeptide Y are potent neuropeptide Y Y1 receptor antagonists and neuropeptide Y Y4 receptor agonists. (PubMed id 9669502)⁹ Parker E.M....Salisbury B.G. (1998)
(PubMed id 9549761)¹⁰
(PubMed id 15608161)¹⁰

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 4888	HGNC: 7959	AceView: NPY6R	Ensembl:ENSG00000226306	euGenes: HUgn4888
ECgene: NPY6R	H-InvDB: NPY6R

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for NPY6R	Pharmacogenomics, SNPs, Pathways

Intellectual Property for NPY6R gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for NPY6R gene:
Search GeneIP for patents involving NPY6R

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

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About This Section


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GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 27 Apr 2013

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Category			VWF (GIFTS: 73) von Willebrand factor
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NPY6R Gene

neuropeptide Y receptor Y6 (pseudogene)

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NPY6R Gene

neuropeptide Y receptor Y6 (pseudogene)

Aliasesfor NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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for NPY6R gene

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