NPVF Gene
protein-coding GIFtS : 51
GCID: GC07 M025264
neuropeptide VF precursor (Previous name: chromosome 7 open reading frame 9 ) (Previous symbol: C7orf9 )
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Aliasesfor NPVF gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Neuropeptide VF Precursor 1 2 FMRFamide-Related Peptides2 C7orf91 2 3 Neuropeptide NPVF2 RFRP1 2 3 RFamide-Related Peptide2 Chromosome 7 Open Reading Frame 91 Neuropeptide VF3
Export aliases for NPVF gene to outside databases Previous GC identifer: GC07M025231
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Summariesfor NPVF gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section UniProtKB/Swiss-Prot: RFRP_HUMAN, Q9HCQ7 Function : Neuropeptide RFRP-1 acts as a potent negative regulator of gonadotropin synthesis and secretion.Neuropeptides NPSF and NPVF efficiently inhibit forskolin-induced production of cAMP, but RFRP-2 shows no inhibitory activity. Neuropeptide RFRP-1 induces secretion of prolactin in rats. Neuropeptide NPVF blocks morphine-induced analgesia
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Genomic Viewsfor NPVF gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NPVF gene promoter: E2F-4 E2F-3a E2F-5 Lmo2 E2F-2 CREB E2F E2F-1 Nkx6-1 deltaCREB Other transcription factors Search SABiosciences Chromatin IP Primers for NPVF Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPVF
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7p21-p15 Ensembl cytogenetic band: 7p15.3 HGNC cytogenetic band: 7p21-p15 NPVF Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M025264: view genomic region
(about GC identifiers )
Start:
25,264,189 bp from pter
End:
25,268,105 bp from pter
Size:
3,917 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 25,315,484-25,319,401
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Proteinsfor NPVF gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: RFRP_HUMAN, Q9HCQ7 (See
protein sequence )Recommended Name: FMRFamide-related peptides precursor Size : 196 amino acids; 22309 Da
Subcellular location : Secreted
Mass spectrometry : Mass=1428.85; Method=MALDI; Range=81-92; Source=PubMed:20027225;
Mass spectrometry : Mass=969.56; Method=MALDI; Range=124-131; Source=PubMed:20027225;
Secondary accessions : A4D164 Q7LE27 Q96PI9Alternative splicing : 2 isoforms : Q9HCQ7-1 Q9HCQ7-2 Explore the universe of human proteins at neXtProt for NPVF: NX_Q9HCQ7 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q9HCQ7 NPVF Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_071433.3 ENSEMBL proteins: ENSP00000222674 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005576 extracellular region
IEA -- GO:0016020 membrane
NAS --
NPVF for ontologies About GeneDecksing NPVF Antibody Products: Assay Products for NPVF:
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Protein
Domains / Familiesfor NPVF gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NPVF for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q9HCQ7 ProtoNet protein and cluster: Q9HCQ7
UniProtKB/Swiss-Prot: RFRP_HUMAN, Q9HCQ7 Similarity : Belongs to the FARP (FMRFamide related peptide) family
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Functionfor NPVF gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: RFRP_HUMAN, Q9HCQ7 Function : Neuropeptide RFRP-1 acts as a potent negative regulator of gonadotropin synthesis and secretion.Neuropeptides NPSF and NPVF efficiently inhibit forskolin-induced production of cAMP, but RFRP-2 shows no inhibitory activity. Neuropeptide RFRP-1 induces secretion of prolactin in rats. Neuropeptide NPVF blocks morphine-induced analgesia
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NPVF (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NPVFOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NPVF (NM_022150 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NPVF Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NPVF
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPVF
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0004930 G-protein coupled receptor activity
NAS -- GO:0005102 receptor binding
-- --
NPVF for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for NPVF :
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Pathways & Interactionsfor NPVF gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Neuropeptides signaling through G-protein alpha-i & G-protein alpha-q
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for NPVF
NPVF for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NPVF STRING Interaction
Network Preview (showing 3 interactants - click image to see more details)3 Interacting proteins for NPVF (Q9HCQ7 1 , 2 , 3 ENSP00000222674 4 ) via UniProtKB, MINT, STRING , and/or I2D Interactant Interaction Details GeneCard External ID(s) ABL1 P00519 1 , 2 , 3 , ENSP00000361423 4 EBI-1753111,EBI-375543 MINT-8110671 I2D:
score=3 STRING: ENSP00000361423 FYN P06241 1 , 3 , ENSP00000357656 4 EBI-1753111,EBI-515315 I2D:
score=2 STRING: ENSP00000357656 NCK1 P16333 1 , 3 , ENSP00000288986 4 EBI-1753111,EBI-389883 I2D:
score=2 STRING: ENSP00000288986
About this table Gene Ontology (GO): 3 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0007218 neuropeptide signaling pathway
NAS 11025660 GO:0019233 sensory perception of pain
-- -- GO:0032277 negative regulation of gonadotropin secretion
IDA --
NPVF for ontologies About GeneDecksing
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Drugs & Compoundsfor NPVF gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NPVF 1 HMDB Compound for NPVF About this table Search CenterWatch for drugs/clinical trials and news about NPVF / RFRP
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Transcriptsfor NPVF gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NPVF gene: NM_022150.3 Unigene Cluster for NPVF:
Neuropeptide VF precursor Hs.60473 [show with all ESTs ] Unigene Representative Sequence: NM_022150 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000222674 (uc003sxo.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NPVF (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NPVFOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NPVF (NM_022150 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NPVF Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NPVF
Additional cDNA sequence: AB040290.1 AF330057.1 AF440392.1
1 DOTS entry : DT.208309
14 AceView cDNA sequences :
BU739069 AA017622 AB040290 AA010974 BV203459 BM714303 NM_022150 BG206774 AF330057 AF440392 AA017528 AA011146 BX282962 R84948 GeneLoc Exon Structure
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Expression for NPVF gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NPVF expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GTTGACAAAT
About this image NPVF expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Brain Hypothalamus Brain Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See NPVF Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NPVF SOURCE GeneReport for Unigene cluster: Hs.60473 UniProtKB/Swiss-Prot: RFRP_HUMAN, Q9HCQ7 Tissue specificity : Isoform 1 is specifically expressed in the retina. Neuropeptides RFRP-1 and NPVF are detected inthe hypothalamus SABiosciences Custom PCR Arrays for NPVF Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NPVFBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NPVF QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NPVF QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NPVF In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPVF
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Orthologsfor NPVF gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for NPVF gene from 3/9 species (see all 9 ) About this table
ENSEMBL Gene Tree for NPVF (if available)TreeFam Gene Tree for NPVF (if available)
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Paralogsfor NPVF gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor NPVF gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NPVF (25264189 - 25268105 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for NPVF 1 Indel : 59400
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NPVF
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Disorders
/ Diseasesfor NPVF gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NPVF for disorders About GeneDecksing 2 diseases for NPVF : About MalaCards macular dystrophy retinitis 1 disease from the University of Copenhagen DISEASES database for NPVF :Pain agnosia Human Genome Epidemiology (HuGE) Navigator: NPVF (1 document)Export disorders for NPVF gene to outside databases
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Publicationsfor NPVF gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NPVF gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with NPVF) Utopia : connect your pdf to the dynamic world of online information
Genomic structure and assessment of the retinally expressed RFamide- related peptide gene in dominant cystoid macular dystrophy. (PubMed id 11951088) 1 , 2 , 3, 9 Schulz H.L.... Weber B.H.F. (2002) New neuropeptides containing carboxy-terminal RFamide and their receptor in mammals. (PubMed id 11025660) 1 , 2 , 9 Hinuma S.... Fujino M. (2000) Identification of human GnIH homologs, RFRP-1 and RFR P-3, and the cognate receptor, GPR147 in the human hypothalamic pituitary axis. (PubMed id 20027225) 1 , 2 Ubuka T....Bentley G.E. (2009) Human chromosome 7: DNA sequence and biology. (PubMed id 12690205) 1 , 2 Scherer S.W.... Tsui L.-C. (2003) The DNA sequence of human chromosome 7. (PubMed id 12853948) 1 , 2 Hillier L.W.... Wilson R.K. (2003) Identification and characterization of novel mammalian neuropeptide FF-like peptides that attenuate morphine-induced antinociception. (PubMed id 11481330) 1 , 2 Liu Q.... Austin C.P. (2001) EST mining of the UniGene dataset to identify retina-specific genes. (PubMed id 11173868) 1 , 3 Stohr H....Weber B.H. (2000) Systematic identification of SH3 domain-mediated human protein-protein interactions by peptide array target screening. (PubMed id 17474147) 1 Wu C....Li S.S. (2007) Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548) 1 Bonaldo M.F.... Soares M.B. (1996) Evidence that RF-amide related peptides are inhibitor s of reproduction in mammals. (PubMed id 19362107) 9 Clarke I.J....Smith J.T. (2009)
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External Searches for NPVF gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NPVF gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NPVF gene
(According to HUGE )
About This Section --
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Specialized Databases showing NPVF gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NPVF Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NPVF gene: Search GeneIP for patents involving NPVF GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NPVF gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NPVF OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NPVF OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NPVF OriGene Protein Over-expression Lysate for NPVF Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NPVF Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NPVF OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NPVF Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NPVF OriGene Custom Protein Services for NPVF OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NPVF QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NPVF QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPVF QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NPVF QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NPVF QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NPVF
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NPVF Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPVF
Search ThermoFisher Antibodies for NPVF
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NPVF
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