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Aliases for NPTN-IT1 Gene

Subcategory (RNA class) for NPTN-IT1 Gene

lncRNA

Quality Score for this RNA gene is

3

Aliases for NPTN-IT1 Gene

  • NPTN Intronic Transcript 1 2 3
  • NPTN Intronic Transcript 1 (Non-Protein Coding) 2 3
  • Long Non-Coding RNA, Low Expression In Tumor 3
  • Low Expression In Tumor 2
  • Long Non-Coding RNA 2
  • LncRNA-LET 3

External Ids for NPTN-IT1 Gene

ORGUL Members for NPTN-IT1 Gene

Previous GeneCards Identifiers for NPTN-IT1 Gene

  • GC15U901473

Summaries for NPTN-IT1 Gene

GeneCards Summary for NPTN-IT1 Gene

NPTN-IT1 (NPTN Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPTN-IT1 Gene

Genomics for NPTN-IT1 Gene

Genomic Location for NPTN-IT1 Gene

Chromosome:
15
Start:
73,566,938 bp from pter
End:
73,569,543 bp from pter
Size:
2,606 bases
Orientation:
Minus strand

Genomic View for NPTN-IT1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPTN-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPTN-IT1 Gene

No data available for Regulatory Elements for NPTN-IT1 Gene

Proteins for NPTN-IT1 Gene

Post-translational modifications for NPTN-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPTN-IT1 Gene

Domains & Families for NPTN-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPTN-IT1 Gene

Function for NPTN-IT1 Gene

Animal Model Products

  • Taconic Biosciences Mouse Models for NPTN-IT1 TF1107 Nptn

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPTN-IT1 Gene

Localization for NPTN-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPTN-IT1 Gene

Pathways & Interactions for NPTN-IT1 Gene

SuperPathways for NPTN-IT1 Gene

No Data Available

Interacting Proteins for NPTN-IT1 Gene

Gene Ontology (GO) - Biological Process for NPTN-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPTN-IT1 Gene

Drugs & Compounds for NPTN-IT1 Gene

No Compound Related Data Available

Transcripts for NPTN-IT1 Gene

mRNA/cDNA for NPTN-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPTN-IT1 Gene

NPTN intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NPTN-IT1 Gene

No ASD Table

Relevant External Links for NPTN-IT1 Gene

GeneLoc Exon Structure for
NPTN-IT1
ECgene alternative splicing isoforms for
NPTN-IT1

Expression for NPTN-IT1 Gene

SOURCE GeneReport for Unigene cluster for NPTN-IT1 Gene Hs.656678

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for NPTN-IT1 Gene

Orthologs for NPTN-IT1 Gene

Evolution for NPTN-IT1 Gene

ENSEMBL:
Gene Tree for NPTN-IT1 (if available)
TreeFam:
Gene Tree for NPTN-IT1 (if available)

No data available for Orthologs for NPTN-IT1 Gene

Paralogs for NPTN-IT1 Gene

No data available for Paralogs for NPTN-IT1 Gene

Variants for NPTN-IT1 Gene

Relevant External Links for NPTN-IT1 Gene

HapMap Linkage Disequilibrium report
NPTN-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPTN-IT1 Gene

Disorders for NPTN-IT1 Gene

Relevant External Links for NPTN-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NPTN-IT1
genes like me logo Genes that share disorders with NPTN-IT1: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPTN-IT1 Gene

Publications for NPTN-IT1 Gene

  1. Repression of the long noncoding RNA-LET by histone deacetylase 3 contributes to hypoxia-mediated metastasis. (PMID: 23395002) Yang F. … Sun S.H. (Mol. Cell 2013) 2 67
  2. Long noncoding RNA-LET, which is repressed by EZH2, inhibits cell proliferation and induces apoptosis of nasopharyngeal carcinoma cell. (PMID: 26243049) Sun Q. … Yang C. (Med. Oncol. 2015) 67
  3. Long non-coding RNA-LET is a positive prognostic factor and exhibits tumor-suppressive activity in gallbladder cancer. (PMID: 25213660) Ma M.Z. … Quan Z.W. (Mol. Carcinog. 2014) 67
  4. Long noncoding RNA high expression in hepatocellular carcinoma facilitates tumor growth through enhancer of zeste homolog 2 in humans. (PMID: 21769904) Yang F. … Sun S.H. (Hepatology 2011) 67
  5. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R. … Stanton L.W. (Nat. Biotechnol. 2004) 67

Products for NPTN-IT1 Gene

Sources for NPTN-IT1 Gene

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