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Aliases for NPSR1-AS1 Gene

Subcategory (RNA class) for NPSR1-AS1 Gene

processed_transcript

Quality Score for this RNA gene is

3

Aliases for NPSR1-AS1 Gene

  • NPSR1 Antisense RNA 1 2 3
  • Asthma-Associated Alternatively Spliced Gene 1 2 3
  • NPSR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AAA1 3 6

External Ids for NPSR1-AS1 Gene

Summaries for NPSR1-AS1 Gene

Entrez Gene Summary for NPSR1-AS1 Gene

  • This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]

GeneCards Summary for NPSR1-AS1 Gene

NPSR1-AS1 (NPSR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the processed_transcript RNA class. Diseases associated with NPSR1-AS1 include asthma.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPSR1-AS1 Gene

Genomics for NPSR1-AS1 Gene

Genomic Location for NPSR1-AS1 Gene

Start:
34,346,512 bp from pter
End:
34,871,582 bp from pter
Size:
525,071 bases
Orientation:
Minus strand

Genomic View for NPSR1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPSR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPSR1-AS1 Gene

No data available for Regulatory Elements for NPSR1-AS1 Gene

Proteins for NPSR1-AS1 Gene

Post-translational modifications for NPSR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPSR1-AS1 Gene

Domains for NPSR1-AS1 Gene

Gene Families for NPSR1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NPSR1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPSR1-AS1 Gene

Function for NPSR1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPSR1-AS1 Gene

Localization for NPSR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPSR1-AS1 Gene

Pathways for NPSR1-AS1 Gene

SuperPathways for NPSR1-AS1 Gene

No Data Available

Interacting Proteins for NPSR1-AS1 Gene

Gene Ontology (GO) - Biological Process for NPSR1-AS1 Gene

None

No data available for Pathways by source for NPSR1-AS1 Gene

Transcripts for NPSR1-AS1 Gene

Unigene Clusters for NPSR1-AS1 Gene

NPSR1 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPSR1-AS1
    • Block miRNA regulation of NPSR1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for NPSR1-AS1

    Primer Products

    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for NPSR1-AS1 Gene

    No ASD Table

    Relevant External Links for NPSR1-AS1 Gene

    GeneLoc Exon Structure for
    NPSR1-AS1
    ECgene alternative splicing isoforms for
    NPSR1-AS1

    Expression for NPSR1-AS1 Gene

    mRNA expression in normal human tissues for NPSR1-AS1 Gene

    mRNA differential expression in normal tissues according to GTEx for NPSR1-AS1 Gene

    This gene is overexpressed in Kidney - Cortex (11.9), Muscle - Skeletal (5.1), and Brain - Anterior cingulate cortex (BA24) (4.3).

    SOURCE GeneReport for Unigene cluster for NPSR1-AS1 Gene Hs.487951

    genes like me logo Genes that share expressions with NPSR1-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NPSR1-AS1 Gene

    Orthologs for NPSR1-AS1 Gene

    Evolution for NPSR1-AS1 Gene

    ENSEMBL:
    Gene Tree for NPSR1-AS1 (if available)
    TreeFam:
    Gene Tree for NPSR1-AS1 (if available)

    No data available for Orthologs for NPSR1-AS1 Gene

    Paralogs for NPSR1-AS1 Gene

    No data available for Paralogs for NPSR1-AS1 Gene

    Variants for NPSR1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for NPSR1-AS1 Gene

    SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
    rs376825 -- 34,652,068(+) TAATC(A/C)CACTG intron-variant
    rs450463 -- 34,652,146(+) CTATT(C/G)TACCC intron-variant
    rs714140 -- 34,653,510(+) TTTCA(A/G)CATGA intron-variant
    rs714588 -- 34,653,614(+) TGCAC(A/G)AAGCC intron-variant
    rs720253 -- 34,390,560(+) aaatt(A/G)aagag intron-variant

    Relevant External Links for NPSR1-AS1 Gene

    HapMap Linkage Disequilibrium report
    NPSR1-AS1

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NPSR1-AS1 Gene

    Disorders for NPSR1-AS1 Gene

    MalaCards: The human disease database

    MalaCards: The human disease database. (1) Diseases for NPSR1-AS1 Gene including...

    Search for NPSR1-AS1 Gene in MalaCards »
    genes like me logo Genes that share disorders with NPSR1-AS1: view

    No data available for UniProtKB/Swiss-Prot for NPSR1-AS1 Gene

    Publications for NPSR1-AS1 Gene

    1. Characterization of a common susceptibility locus for asthma-related traits. (PMID: 15073379) Laitinen T. … Kere J. (Science 2004) 2 3
    2. Replication of genetic association studies in asthma and related phenotypes. (PMID: 20395963) Undarmaa S. … Suzuki Y. (J. Hum. Genet. 2010) 3
    3. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for NPSR1-AS1 Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate NPSR1-AS1
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for NPSR1-AS1
      • Block miRNA regulation of NPSR1-AS1 using miScript Target Protectors

      Sources for NPSR1-AS1 Gene

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