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Aliases for NPSR1-AS1 Gene

Subcategory (RNA class) for NPSR1-AS1 Gene

processed_transcript

Quality Score for this RNA gene is

3

Aliases for NPSR1-AS1 Gene

  • NPSR1 Antisense RNA 1 2 3
  • Asthma-Associated Alternatively Spliced Gene 1 2 3
  • NPSR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AAA1 3 6

External Ids for NPSR1-AS1 Gene

Summaries for NPSR1-AS1 Gene

Entrez Gene Summary for NPSR1-AS1 Gene

  • This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]

GeneCards Summary for NPSR1-AS1 Gene

NPSR1-AS1 (NPSR1 Antisense RNA 1) is an RNA Gene, and belongs to the processed_transcript RNA class. Diseases associated with NPSR1-AS1 include asthma.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPSR1-AS1 Gene

Genomics for NPSR1-AS1 Gene

Genomic Location for NPSR1-AS1 Gene

Start:
34,346,512 bp from pter
End:
34,871,582 bp from pter
Size:
525,071 bases
Orientation:
Minus strand

Genomic View for NPSR1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPSR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPSR1-AS1 Gene

No data available for Regulatory Elements for NPSR1-AS1 Gene

Proteins for NPSR1-AS1 Gene

Post-translational modifications for NPSR1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPSR1-AS1 Gene

Domains for NPSR1-AS1 Gene

Gene Families for NPSR1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NPSR1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPSR1-AS1 Gene

Function for NPSR1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPSR1-AS1 Gene

Localization for NPSR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPSR1-AS1 Gene

Pathways for NPSR1-AS1 Gene

SuperPathways for NPSR1-AS1 Gene

No Data Available

Interacting Proteins for NPSR1-AS1 Gene

Gene Ontology (GO) - Biological Process for NPSR1-AS1 Gene

None

No data available for Pathways by source for NPSR1-AS1 Gene

Transcripts for NPSR1-AS1 Gene

Unigene Clusters for NPSR1-AS1 Gene

NPSR1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NPSR1-AS1 Gene

No ASD Table

Relevant External Links for NPSR1-AS1 Gene

GeneLoc Exon Structure for
NPSR1-AS1
ECgene alternative splicing isoforms for
NPSR1-AS1

Expression for NPSR1-AS1 Gene

mRNA expression in normal human tissues for NPSR1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NPSR1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (11.9), Muscle - Skeletal (5.1), and Brain - Anterior cingulate cortex (BA24) (4.3).

SOURCE GeneReport for Unigene cluster for NPSR1-AS1 Gene Hs.487951

genes like me logo Genes that share expressions with NPSR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NPSR1-AS1 Gene

Orthologs for NPSR1-AS1 Gene

Evolution for NPSR1-AS1 Gene

ENSEMBL:
Gene Tree for NPSR1-AS1 (if available)
TreeFam:
Gene Tree for NPSR1-AS1 (if available)

No data available for Orthologs for NPSR1-AS1 Gene

Paralogs for NPSR1-AS1 Gene

No data available for Paralogs for NPSR1-AS1 Gene

Variants for NPSR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPSR1-AS1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type MAF
rs376825 -- 34,652,068(+) TAATC(A/C)CACTG intron-variant
rs450463 -- 34,652,146(+) CTATT(C/G)TACCC intron-variant
rs714140 -- 34,653,510(+) TTTCA(A/G)CATGA intron-variant
rs714588 -- 34,653,614(+) TGCAC(A/G)AAGCC intron-variant
rs720253 -- 34,390,560(+) aaatt(A/G)aagag intron-variant

Relevant External Links for NPSR1-AS1 Gene

HapMap Linkage Disequilibrium report
NPSR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NPSR1-AS1 Gene

Disorders for NPSR1-AS1 Gene

(1) MalaCards Diseases for NPSR1-AS1 Gene

Search for NPSR1-AS1 Gene in MalaCards »
genes like me logo Genes that share disorders with NPSR1-AS1: view

No data available for UniProtKB/Swiss-Prot for NPSR1-AS1 Gene

Publications for NPSR1-AS1 Gene

  1. Characterization of a common susceptibility locus for asthma-related traits. (PMID: 15073379) Laitinen T. … Kere J. (Science 2004) 2 3
  2. Replication of genetic association studies in asthma and related phenotypes. (PMID: 20395963) Undarmaa S. … Suzuki Y. (J. Hum. Genet. 2010) 3
  3. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G. … Rudan I. (PLoS Genet. 2013) 3
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for NPSR1-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPSR1-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPSR1-AS1
    • Block miRNA regulation of NPSR1-AS1 using miScript Target Protectors

    Sources for NPSR1-AS1 Gene

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