NPSR1-AS1 Gene
RNA gene GIFtS: 28
GCID: GC07M034387
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NPSR1 antisense RNA 1(Previous name: NPSR1 antisense RNA 1 (non-protein coding) )
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Aliases
for NPSR1-AS1 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
Subcategory (RNA class): lncRNA
Quality score for this RNA gene is 3
| Aliases |
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| NPSR1 Antisense RNA 11 2 | | AAA11 2 5 | | IMAGE:48275851 | | NPSR1 Antisense RNA 1 (Non-Protein Coding)1 |
Export aliases for NPSR1-AS1 gene to outside databases |
Summaries
for NPSR1-AS1 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for NPSR1-AS1:
This gene is located within a region that has been associated with asthma susceptibility. The locus is considerednon-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Threealternatively spliced transcript variants have been identified for this gene. (provided by RefSeq, May 2010)
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Genomic Views
for NPSR1-AS1 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000007.13 NC_018918.1 NT_007819.17 NT_079592.2
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for NPSR1-AS1
Other transcription factors
Search SABiosciences Chromatin IP Primers for NPSR1-AS1
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPSR1-AS1 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 7p14.3 Ensembl cytogenetic band: 7p14.3 HGNC cytogenetic band: 7p14.3NPSR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 7 GeneLoc Exon Structure GeneLoc location for GC07M034387: view genomic region
(about GC identifiers)
Start:
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34,386,124 bp from pter |
End:
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34,911,194 bp from pter |
Size:
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525,071 bases |
Orientation:
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minus strand |
1 alternative location:
| Chr7-,CRA_TCAG 34,430,522-34,918,952 |
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Proteins
for NPSR1-AS1 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
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UniProtKB: --
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Protein
Domains /
Families
for NPSR1-AS1 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
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Function
for NPSR1-AS1 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPSR1-AS1 |
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Pathways & Interactions
for NPSR1-AS1 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NPSR1-AS1
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Drugs & Compounds
for NPSR1-AS1 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
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 Browse Tocris compounds for NPSR1-AS1
Search CenterWatch for drugs/clinical trials and news about NPSR1-AS1 
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Transcripts
for NPSR1-AS1 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
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REFSEQ mRNAs for NPSR1-AS1 gene (8 alternative transcripts): NM_207283.1 NM_207284.1 NM_207285.1 NM_207286.1 NM_207287.1 NM_207288.1 NM_207289.1 NM_207290.1 Unigene Cluster for NPSR1-AS1: NPSR1 antisense RNA 1 Hs.487951 [show with all ESTs]Unigene Representative Sequence: NR_03366411 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000419766(lincRNA)(uc010kwo.2 uc010kwp.2 uc003tdz.3 uc010kwq.2)
ENST00000439852(lincRNA)(uc003teb.1) ENST00000358772(lincRNA) ENST00000431669(lincRNA)(uc011kaq.1)
ENST00000428922(lincRNA)(uc010kwx.1) ENST00000436945(lincRNA)(uc010kwy.3) ENST00000539747(lincRNA)
ENST00000537560(lincRNA) ENST00000535640(lincRNA) ENST00000544556(lincRNA) ENST00000442669(lincRNA)(uc003tek.4)
Additional cDNA sequence: AY312365.1 AY312366.1 AY312369.1 AY312370.1 AY312371.1 AY312372.1 AY312373.1 AY321515.1 BC031961.1 BC130477.1 BX649082.1 NR_015356.2 NR_033664.1 NR_033665.1 U85653.1 8 DOTS entries: DT.102832533 DT.102832535 DT.203579 DT.445112 DT.75119637 DT.91958215 DT.102832529 DT.102832531 24/30 AceView cDNA sequences (see all 30): NM_207285 AY312371 NM_207287 U85653 AY312367 NM_207289 AY312368 NM_207286 AY321516 AY312369 T95260 BC031961 AY312373 BX649082 AY312372 AY321515 BG723002 NM_207288 BX489286 NM_207290 AY312365 AY312370 AY312364 NM_207283
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for NPSR1-AS1 About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 |
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| SP1: | | | | | | | | | | | | | |
| SP2: | | | - | | | | | | | | | | |
| SP3: | | | | | | | - | | | | | |
ECgene alternative splicing isoforms for NPSR1-AS1
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Expression
for NPSR1-AS1 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| Expression evidence for NPSR1-AS1:none
NPSR1-AS1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCATTAGCTC
About this image
Genevestigator expression for NPSR1-AS1
SOURCE GeneReport for Unigene cluster: Hs.487951
SABiosciences Custom PCR Arrays for NPSR1-AS1
Primer
Products: |  | Browse OriGene genome-wide validated SYBR primer pairs
Browse OriGene validated miRNA SYBR primer pairs
| | | Search SABiosciences RT2 qPCR
Primer Assays in human, mouse, rat NPSR1-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NPSR1-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NPSR1-AS1 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPSR1-AS1 |
Orthologs
for NPSR1-AS1 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
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ENSEMBL Gene Tree for NPSR1-AS1 (if available)
TreeFam Gene Tree for NPSR1-AS1 (if available) |
Paralogs
for NPSR1-AS1 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
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Genomic Variants
for NPSR1-AS1 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
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| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 7 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
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HapMap Linkage Disequilibrium report for NPSR1-AS1 (34386124 - 34636124 bp, first 250kb of NPSR1-AS1)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NPSR1-AS1: -- | SABiosciences Cancer Mutation PCR Assays |
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Disorders
/ Diseases
for NPSR1-AS1 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
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NPSR1-AS1 for disorders About GeneDecksing
OMIM gene information: 608596
OMIM disorders: --
1  disease for NPSR1-AS1: About MalaCardsasthma
Export disorders for NPSR1-AS1 gene to outside databases
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Publications
for NPSR1-AS1 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
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PubMed articles for NPSR1-AS1 gene integrated from 9 sources:
(articles sorted by number of sources associating them with NPSR1-AS1) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Characterization of a common susceptibility locus for asthma-related traits. (PubMed id 15073379)1, 3 Laitinen T....Kere J. (2004)
- Replication of genetic association studies in asthma and related phenotypes. (PubMed id 20395963)1 Undarmaa S....Suzuki Y. (2010)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
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External Searches for NPSR1-AS1 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
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Genome Databases showing NPSR1-AS1 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
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Other Databases showing NPSR1-AS1 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NPSR1-AS1 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
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About This Section
| Patent Information for NPSR1-AS1 gene:
Search GeneIP for patents involving NPSR1-AS1
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for NPSR1-AS1 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
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|  | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NPSR1-AS1 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NPSR1-AS1 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPSR1-AS1 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NPSR1-AS1 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NPSR1-AS1 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NPSR1-AS1 |
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 | | | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPSR1-AS1 |
|  |  |  | | | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NPSR1-AS1 |
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