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NPSR1 Gene

protein-coding   GIFtS: 51

GC07P034664
neuropeptide S receptor 1
(Previous name: G protein-coupled receptor 154 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbol: GPR154)
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
ASRT2 2, 5
GPR154 2, 3, 5
GPRA 1, 2, 3, 5
NPSR 2
OTTHUMP00000125228 2
OTTHUMP00000125229 2
PGR14 1, 2, 3, 5
VRR1 2, 5
Descriptions
G protein-coupled receptor 154 1, 2
G protein-coupled receptor for asthma susceptibility 2
G-protein coupled receptor 154 3
G-protein coupled receptor PGR14 3
G-protein coupled receptor for asthma susceptibility 3
neuropeptide S receptor 1 2
vasopressin receptor-related receptor 1 2
External Ids
HGNC: 236311
Entrez Gene: 3871292
UniProtKB: Q6W5P43
Ensembl: ENSG000001872587
Search outside databases for aliases for NPSR1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for NPSR1:
This gene is a member of the G protein-coupled receptor 1 family and encodes a plasma membrane
protein. Increased expression of this gene in ciliated cells of the respiratory epithelium and in
bronchial smooth muscle cells is associated with asthma. Mutations in this gene have also been
associated with this disease. Alternatively spliced variants which encode different protein
isoforms have been described; however, not all variants have been fully characterized. [provided
by RefSeq]

UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4
Function: May be active in signaling pathway in an autocrine or paracrine fashion in several
tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on
cell growth. Involved in pathogenesis of asthma and other IgE-mediated diseases

Gene Wiki entry for NPSR1 (Neuropeptide_S_receptor)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the NPSR1 gene  

Entrez Gene cytogenetic band: 7p14.3   Ensembl cytogenetic band:  7p14.3   HGNC cytogenetic band: 7p14.3

NPSR1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 7         GeneLoc Exon Structure

GeneLoc location for GC07P034664:     (about GC identifiers)

Start:
34,664,422 bp from pter
End:
34,884,469 bp from pter
Size:
220,048 bases
Orientation:
plus strand

1 alternative location:
Chr7+,CRA_TCAG 34,742,034-34,962,952     
RefSeq DNA sequence:
NC_000007.12  NT_007819.16  NT_079592.2  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4 (See protein sequence)
Recommended Name: Neuropeptide S receptor  
Size: 371 amino acids; 42687 Da
Subcellular location: Isoform 1: Cell membrane; Multi-pass membrane protein
Subcellular location: Isoform 3: Cell membrane; Multi-pass membrane protein
Subcellular location: Isoform 4: Cell membrane; Multi-pass membrane protein
Subcellular location: Isoform 2: Cytoplasm
Subcellular location: Isoform 5: Cytoplasm
Subcellular location: Isoform 6: Cytoplasm
Subcellular location: Isoform 7: Cytoplasm
Subcellular location: Isoform 9: Cytoplasm
Miscellaneous: Only isoforms with 7 transmembrane topology (isoform 1, isoform 3 and isoform 4) are
transported into the plasma membrane in transfected cells, while the truncated ones retain
intracellular compartments
Secondary accessions: Q2XP58 Q56H76 Q56H77 Q56H78 Q6JSL4 Q6JSL5 Q6JSL6 Q6JSL7 Q6JSL8 Q6W5P3 Q6ZMB8
Alternative splicing: 9 isoforms:  Q6W5P4-1   Q6W5P4-2   Q6W5P4-3   Q6W5P4-4   Q6W5P4-5   Q6W5P4-6   Q6W5P4-7   Q6W5P4-8   
Q6W5P4-9   

Post-translational modifications:

  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins (2 alternative transcripts): 
    NP_997055.1  NP_997056.1  


    ENSEMBL proteins: 
    ENSP00000334093 ENSP00000370965 ENSP00000370950 ENSP00000379402 ENSP00000353788 ENSP00000370955 
    ENSP00000370953 ENSP00000352839 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (GPR154)
    Human Recombinant Proteins from Abnova (GPR154)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005737 cytoplasm IEA--
    GO:0005886 plasma membrane IEA--
    GO:0016021 integral to membrane IEA--
    About this table

    Antibodies for NPSR1: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Sigma-Aldrich Antibodies for NPSR1
    Browse R&D Systems for Antibodies
    Antibodies from Abcam (GPR154), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (GPR154)
    Novus Biologicals Antibodies for NPSR1

    Assays for NPSR1: 
    Invitrogen Assays for NPSR1
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    3 InterPro domains/families:
     IPR017452 GPCR_Rhodpsn_supfam
     IPR000276 7TM_GPCR_Rhodpsn
     IPR001817 Vasoprsn_rcpt


       GeneDecks  NPSR1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry Q6W5P4

    ProtoNet protein and cluster: Q6W5P4

    UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4
    Similarity: Belongs to the G-protein coupled receptor 1 family

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (NPSR1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (GPR154)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_207172

                  Applied Biosystems Silencer® siRNAs for NPSR1

                  Sigma-Aldrich siRNA and siRNA Panels for NPSR1  
                         Sigma-Aldrich shRNA for NPSR1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_207172
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_207172
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_207172 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_207173

    UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4
    Function: May be active in signaling pathway in an autocrine or paracrine fashion in several
    tissues. Receptor for neuropeptide S, it may mediate its action, such as inhibitory effects, on
    cell growth. Involved in pathogenesis of asthma and other IgE-mediated diseases

    3 MGI mutant phenotypes (inferred from 1 allele(MGI details for Npsr1):

    homeostasis/metabolismimmune systemrespiratory system

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004872 receptor activity IEA--
    GO:0004930 G-protein coupled receptor activity IEA--
    GO:0005000 vasopressin receptor activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section


     Gene Network CentralTM Interacting Genes and Proteins Network for  NPSR1 


    5/7 Interacting proteins for NPSR1 (ENSP000003709503) via UniProtKB, MINT, and/or STRING (see all 7 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    ENSG00000197085ENSP000003506423STRING (score=.922)
    ADAM33ENSP000003489123STRING (score=.894)
    PHF11ENSP000003675703STRING (score=.877)
    GPR44ENSP000003328123STRING (score=.848)
    PTGDRENSP000003034243STRING (score=.753)
    About this table

    2 Gene Ontology (GO) biological process terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0007165 signal transduction IEA--
    GO:0007186 G-protein coupled receptor protein signaling pathway IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for NPSR1

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (NPSR1)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (GPR154)
                   OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2): NM_207172

                  Sigma-Aldrich siRNA and siRNA Panels for NPSR1  
                         Sigma-Aldrich shRNA for NPSR1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_207172  NM_207173  

    REFSEQ mRNAs for NPSR1 gene (2 alternative transcripts): 

    NM_207172.1   NM_207173.1   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_207172  NM_207173  

                   OriGene GFP tagged cDNA clones in CMV expression vector (see all 2): NM_207172
                                     Myc/DDK tagged cDNA clones in CMV expression vector (see all 2): NM_207172
                                     untagged cDNA clones in CMV expression vector (see all 2): NM_207172 

    Additional cDNA sequence: 

    AK172847.1 AY255536.1 AY310326.1 AY310327.1 AY310328.1 AY310329.1 AY310332.1 AY956446.1 
    AY956447.1 AY956448.1 BC132693.1 BC132695.1 BC144380.1 

    5 DOTS entries:

    DT.97798466  DT.75119172  DT.121106215  DT.435241  DT.102832532 

    14 AceView cDNA sequences:

    AY310328 AY310331 AY310332 AY310327 AY310330 NM_207172 NM_207173 AY255536 
    AY310326 AY310329 CD673194 BM828553 AK172847 AI500347 

    highest scoring ESTs for NPSR1:

    AY310327 AY310328 AI500347 NM_207172 NM_207173 AY255536 AY310329 CD673194 AA004400 AA608722 

    Unigene Cluster for NPSR1:

    Neuropeptide S receptor 1
    Hs.652373  [show with all ESTs]
    Unigene Representative Sequence: AY310326


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for NPSR1

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10
    SP1:                          -                                       
    SP2:                          -     -                                 
    SP3:                    -     -                                       
    SP4:                    -     -     -                                 
    SP5:                                                                  

    About this scheme

    ECgene alternative splicing isoforms for NPSR1

    8 Ensembl transcripts including schematic representations:
    ENST00000334481  ENST00000381553  ENST00000381539  ENST00000396095  ENST00000360581  ENST00000381544  
    ENST00000381542  ENST00000359791  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    NPSR1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for NPSR1

    1 / 3Data from (Publications) and GNF BioGPS
        About these images

    About these images

    CGAP SAGE TAG: --

    SOURCE GeneReport for Unigene cluster: Hs.652373

    UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4
    Tissue specificity: Ubiquitous. Isoform 1 is predominantly expressed in smooth muscle, and isoform
    4 is predominantly expressed in epithelial cells. In bronchial biopsies, isoform 4 is expressed in
    smooth muscle cells of asthma patients, but not in control patients; whereas in epithelial cells,
    isoform 4 expression is consistently stronger in asthma patients

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for NPSR1 gene from 5/8 species (see all 8 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    NPSR11   -- neuropeptide S receptor 1 88.14(n)
    88.95(a)
    482394  XM_539511.2  XP_539511.2 
    chimpanzee
    (Pan troglodytes)
    NPSR11   -- neuropeptide S receptor 1 99.01(n)
    98.92(a)
    747277  XM_001168820.1  XP_001168820.1 
    cow
    (Bos taurus)
    NPSR11   -- neuropeptide S receptor 1 90.72(n)
    90.54(a)
    519486  XM_864762.2  XP_869855.1 
    rat
    (Rattus norvegicus)
    Npsr11   -- neuropeptide S receptor 1 86.88(n)
    89.22(a)
    300458  XM_235968.4  XP_235968.4 
    mouse
    (Mus musculus)
    Npsr11, 5 95
    neuropeptide S receptor 11, 5 86.61(n)1
    89.22(a)1
    3192391  NM_175678.31  NP_783609.11 
     AK0339575  AK0414515  (see all 10)
    About this table        Species with no ortholog for NPSR1

    ENSEMBL Gene Tree for NPSR1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for NPSR1 gene
    AVPR22  GPR192  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/1569 NCBI SNPs in NPSR1 are shown (see all 1569 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 652)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 7 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs8870201,2
    A,C,F,H,O34664507(+) CACTCG/AGCTGC 2 -- ut51 ese313Minor allele frequency- A:0.47NA EU EA WA NS 1076
    rs25305431,2
    A,C,F,H,O34662484(+) TTGTAC/TAGATA 2 -- ng5110Minor allele frequency- N:0.01EU EA WA NA NS 726
    rs10235561,2
    A,C,F,H,O34663070(+) ATACTC/TATTTG 2 -- ng5113Minor allele frequency- T:0.42EU EA WA NA NS 1050
    rs7271621,2
    A,C,F,H,O34840563(-) GTTTTC/GCTTTT 2 S/R mis117Minor allele frequency- N:0.00NA EA EU WA NS 1395
    rs21688911,2
    A,C,F,H,O34663953(-) AGGGCG/AGTTCT 2 -- ng5113Minor allele frequency- A:0.06NA EU EA WA NS 1074
    rs25305451,2
    A,C,F,H,O34663665(+) CTTCCC/TTGCCT 2 -- ng519Minor allele frequency- T:0.27NA EU EA WA NS 650
    rs21254041,2
    A,C,F,H34663913(-) TAAGCT/CACAAC 2 -- ng5110Minor allele frequency- C:0.16EU EA WA NS 932
    rs10235551,2
    A,C,F,H34662904(+) CCACAT/ACAACT 2 -- ng5116Minor allele frequency- A:0.43NA EA EU WA NS 1321
    rs25305471,2
    A,C,F,H34664447(+) GCCTCC/TGTTCA 2 -- ut51 ese310Minor allele frequency- T:0.40EU EA WA NS 916
    rs3249811,2
    A,C,F,H34784638(+) TATTAT/ATTGGC 2 I/N mis123Minor allele frequency- A:0.47NS EU EA WA NA 1662
    About this table

    HapMap Linkage Disequilibrium images for NPSR1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 608595   disorders: 608584  

    UniProtKB/Swiss-Prot: NPSR1_HUMAN, Q6W5P4

  • NPSR1 is associated with susceptibility to asthma and elevated serum IgE levels
    [MIM:608584]. Polymorphisms may influence the development of asthma and bronchial
    hyperresponsiveness in adult, and are significantly associated with allergic sensitization and
    rhinoconjunctivis, as well as asthma in children
  • 2 Novoseek disease relationships for NPSR1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    asthma allergic 64.66 2 17210045 (2)
    asthma 58.97 50 18340359 (4), 15710598 (4), 15947423 (3), 18305139 (3) (see all 11)
    About this table

    Human Gene Mutation Database: NPSR1
    Human Genome Epidemiology Navigator: NPSR1 (14 documents)

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/37 PubMed articles for NPSR1 gene (see all 37 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 387129 HGNC: 23631 AceView: GPR154 Ensembl:ENSG00000187258 euGenes: HUgn387129
    ECgene: NPSR1 H-InvDB: NPSR1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    SeattleSNPshttp://pga.gs.washington.edu/data/gpr154/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for NPSR1:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for NPSR1 Antibodies for NPSR1
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     Antibodies for NPSR1

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