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NPS Gene

protein-coding   GIFtS: 42
GCID: GC10P129347

Neuropeptide S

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Neuropeptide S1 2
Prepro-Neuropeptide S1 2

External Ids:    HGNC: 339401   Entrez Gene: 5948572   Ensembl: ENSG000002142857   OMIM: 6095135   UniProtKB: P0C0P63   

Export aliases for NPS gene to outside databases

Previous GC identifers: GC10U900621 GC10P129237 GC10P122920


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NPS Gene:
NPS (neuropeptide S) is a protein-coding gene. Diseases associated with NPS include gastrointestinal system disease, and pthirus pubis infestation.

UniProtKB/Swiss-Prot: NPS_HUMAN, P0C0P6
Function: Modulates arousal and anxiety. May play an important anorexigenic role. Binds to its receptor NPSR1 with
nanomolar affinity to increase intracellular calcium concentrations (By similarity)

Gene Wiki entry for NPS (Neuropeptide S) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000010.11  NC_018921.2  NT_030059.14  
Regulatory elements:
   Regulatory transcription factor binding sites in the NPS gene promoter:
         TBP   C/EBPbeta   HOXA3   CUTL1   FOXL1   Pax-3   S8   FOXO1a   Cart-1   FOXO1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for NPS

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NPS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q26.2   Ensembl cytogenetic band:  10q26.2   HGNC cytogenetic band: 10q26.2

NPS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NPS gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10P129347:  view genomic region     (about GC identifiers)

Start:
129,347,613 bp from pter      End:
129,350,935 bp from pter
Size:
3,323 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: NPS_HUMAN, P0C0P6 (See protein sequence)
Recommended Name: Neuropeptide S precursor  
Size: 89 amino acids; 10103 Da

Explore the universe of human proteins at neXtProt for NPS: NX_P0C0P6

Explore proteomics data for NPS at MOPED


See NPS Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001025184.1  
ENSEMBL proteins: 
 ENSP00000381105  
Reactome Protein details: P0C0P6

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
ENDOLIG: Endogenous ligands

1 InterPro protein domain:
 IPR028138 Neuropeptide_S

Graphical View of Domain Structure for InterPro Entry P0C0P6

ProtoNet protein and cluster: P0C0P6


NPS for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: NPS_HUMAN, P0C0P6
Function: Modulates arousal and anxiety. May play an important anorexigenic role. Binds to its receptor NPSR1 with
nanomolar affinity to increase intracellular calcium concentrations (By similarity)

Animal Models:

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
NPS_HUMAN, P0C0P6: Secreted
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular5
nucleus3
cytoskeleton2
endoplasmic reticulum2
golgi apparatus2
mitochondrion2
plasma membrane2
cytosol1
endosome1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region TAS--

NPS for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for NPS About    
See pathways by source

SuperPathContained pathways About
1Signaling by GPCR
Signaling by GPCR0.90
Signal Transduction0.58
GPCR downstream signaling0.90
2Peptide ligand-binding receptors
Class A/1 (Rhodopsin-like receptors)0.71
Peptide ligand-binding receptors0.60
GPCR ligand binding0.71
3Gastrin-CREB signalling pathway via PKC and MAPK
Gastrin-CREB signalling pathway via PKC and MAPK0.90
G alpha (q) signalling events0.90
4G alpha (s) signalling events
G alpha (s) signalling events

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


3 Reactome Pathways for NPS
    Peptide ligand-binding receptors
G alpha (q) signalling events
G alpha (s) signalling events



NPS for pathways           About GeneDecksing

    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NPS
Interactions:

    GeneGlobe Interaction Network for NPS

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for NPS (ENSP000003811054) via UniProtKB, MINT, STRING, and/or I2D (see all 183)
InteractantInteraction Details
GeneCardExternal ID(s)
ADMENSP000002781754STRING: ENSP00000278175
ADRB1ENSP000003583014STRING: ENSP00000358301
APPENSP000002849814STRING: ENSP00000284981
AVPR2ENSP000003380724STRING: ENSP00000338072
CASRENSP000002961544STRING: ENSP00000296154
About this table

Gene Ontology (GO): 5 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007218neuropeptide signaling pathway IEA--
GO:0008542visual learning IEA--
GO:0032230positive regulation of synaptic transmission, GABAergic IEA--
GO:0045760positive regulation of action potential IEA--
GO:0051968positive regulation of synaptic transmission, glutamatergic IEA--

NPS for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for NPS



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for NPS gene: 
NM_001030013.1  

Unigene Cluster for NPS:

Neuropeptide S
Hs.643423
Unigene Representative Sequence: NM_001030013
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000398023(uc001ljx.1)
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GenScript: all cDNA clones in your preferred vector (see all 2): NPS (NM_080594)
DNA2.0 Custom Codon Optimized Gene Synthesis Service for NPS
Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPS
Primer
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GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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NPS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: ACTAAGTGTG
NPS Expression
About this image

NPS Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

NPS Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.643423
    Custom PCR Arrays for NPS
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for NPS gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Nps1 , 5 neuropeptide S1, 5 81.44(n)1
73.86(a)1
  7 (81.27 cM)5
1000432541  NM_001163611.11  NP_001157083.11 
 1352686195 
lizard
(Anolis carolinensis)
Reptilia NPS6
neuropeptide S
67(a)
1 ↔ 1
3(53569447-53569635)
tropical clawed frog
(Xenopus tropicalis)
Amphibia nps1 neuropeptide S 60.85(n)
61.63(a)
  101735179  XM_004912718.1  XP_004912775.1 


ENSEMBL Gene Tree for NPS (if available)
TreeFam Gene Tree for NPS (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for NPS (see all 186)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 10 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs591215431,2
C--122919006(+) CCTGC-/ATGC/ATGCGT/ATGCGTGT/AT
GCGTGTGTGT
/ATGCGTGTGTGTGT
gtgtg
3 -- us2k1 cds10--------
rs115975031,2
C,F,H--129345622(+) atggcG/Acatgg 1 -- us2k114Minor allele frequency- A:0.10NS EA NA WA CSA 627
rs1918009751,2
--129345631(+) GGTCCC/TAGCTA 1 -- us2k10--------
rs1500409211,2
--129345685(+) AGGCTA/GCAGTG 1 -- us2k10--------
rs1840120401,2
--129345784(+) CTCCTA/GCCAAT 1 -- us2k10--------
rs110181891,2
C,F,H--129345788(+) TGCCAA/GTTCTA 1 -- us2k122Minor allele frequency- G:0.12NS EA NA WA 2766
rs1453945201,2
--129345871(+) TTTCCA/GCTTAA 1 -- us2k10--------
rs1903128451,2
--129345906(+) CTACAG/TGCAAA 1 -- us2k10--------
rs2013427121,2
--129346016(+) GTTCC-/TGCA  
        
TGCGT
1 -- us2k10--------
rs78980561,2
C--129346020(+) CCtgcA/C/Gtgtgt 1 -- us2k12CSA 3

HapMap Linkage Disequilibrium report for NPS (129347613 - 129350935 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for NPS:    About this table    
Variant IDTypeSubtypePubMed ID
nsv7607CNV Loss18451855

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing NPS
DNA2.0 Custom Variant and Variant Library Synthesis for NPS

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 609513    OMIM disorders: --

Selected diseases for NPS (see all 29):    
About MalaCards
gastrointestinal system disease    pthirus pubis infestation    complex regional pain syndrome    wolfram syndrome
fibromyalgia    pain agnosia    sleep apnea    sleep disorder
leber hereditary optic neuropathy    encephalomyopathy    mitochondrial encephalomyopathy    optic atrophy
agnosia    anxiety disorder    paine syndrome    anorexia nervosa
migraine    skin disease    vascular disease    neuropathy

15 diseases from the University of Copenhagen DISEASES database for NPS:
Migraine     Asthma     Pain agnosia     Complex regional pain syndrome
Rhinitis     Sleep disorder     Dermatitis     Alzheimer's disease
Schizophrenia     Vascular disease     Arthritis     Psoriasis
Diabetes mellitus     Kidney failure     Fibromyalgia

NPS for disorders           About GeneDecksing

Genetic Association Database (GAD): NPS
Human Genome Epidemiology (HuGE) Navigator: NPS (18 documents)

Export disorders for NPS gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NPS gene, integrated from 10 sources (see all 20):
(articles sorted by number of sources associating them with NPS)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Neuropeptide S: a neuropeptide promoting arousal and anxiolytic-like effects. (PubMed id 15312648)1, 2, 3 Xu Y.-L....Civelli O. (Neuron 2004)
  2. Assessment of the neuropeptide S system in anxiety disorders. (PubMed id 20705147)1, 4 Donner J....Hovatta I. (Biol. Psychiatry 2010)
  3. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PubMed id 19240061)1, 4 Trynka G....Wijmenga C. (Gut 2009)
  4. Synthesis and biological activity of human neuropeptide S analogues modified in position 2. (PubMed id 18181564)1, 3 Camarda V....Salvadori S. (J. Med. Chem. 2008)
  5. Neuropeptide S stimulates human monocyte chemotaxis via NPS receptor activation. (PubMed id 23142110)1 Filaferro M....Vitale G. (Peptides 2013)
  6. Non-synonymous polymorphism in the neuropeptide S precursor gene and sleep apnea. (PubMed id 20405330)1 SA!nchez-de-la-Torre M....BarbAc F. (amp 2011)
  7. Neurobiology, pharmacology, and medicinal chemistry of neuropeptide S and its receptor. (PubMed id 19824051)1 Guerrini R....Calo' G. (Med Res Rev 2010)
  8. Genome-wide association identifies the ABO blood group as a major locus associated with serum levels of soluble E-selectin. (PubMed id 19729612)4 Paterson A.D....Bull S.B. (Arterioscler. Thromb. Vasc. Biol. 2009)
  9. Neuropeptide S is a stimulatory anxiolytic agent: a behavioural study in mice. (PubMed id 18376418)1 Rizzi A....Calo G. (Br. J. Pharmacol. 2008)
  10. Downstream target genes of the neuropeptide S-NPSR1 pathway. (PubMed id 16926187)1 Vendelin J....Kere J. (Hum. Mol. Genet. 2006)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 594857 HGNC: 33940 Ensembl:ENSG00000214285 euGenes: HUgn594857 ECgene: NPS
H-InvDB: NPS

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for NPS Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NPS gene:
Search GeneIP for patents involving NPS

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Pre-validated RT2 qPCR Primer Assay in human, mouse, rat NPS  GeneGlobe Interaction Network for NPS
 Regulatory tfbs in NPS promoter
 GenScript Custom Purified and Recombinant Proteins Services for NPS GenScript cDNA clones with any tag delivered in your preferred vector for NPS
 GenScript Custom Assay Services for NPS GenScript Custom overexpressing Cell Line Services for NPS
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 Vector-based siRNA and miRNA, Ready for Transfection Gene Mutant Library, Variants up to 10^11
 Plasmid Preparation Custom Peptide Services
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 Search Tocris compounds for NPS
 Browse Sino Biological Proteins
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 Search Sino Biological for antibodies, proteins & pathways
 Protein Production Services
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

 Novus Biologicals
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 See all of Abcam's Antibodies, Kits and Proteins for NPS
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 Proteins for NPS
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 Browse ESI BIO Cell Lines and PureStem Progenitors for NPS
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 Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPS
 Browse SwitchGear 3'UTR luciferase reporter plasmids for NPS
 Browse SwitchGear Promoter luciferase reporter plasmids for NPS
 Search ThermoFisher Antibodies for NPS
 Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPS
 inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for NPS
 inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for NPS
 LSBio Antibodies in human, mouse, rat for NPS
Customized transgenic rodents for:
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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