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NPS Gene(Protein Coding)

Neuropeptide S

GCID:
GC10P127549
GIFtS:
45
Genes Participants
UDN Logo

Aliases for NPS Gene

Aliases for NPS Gene

  • Neuropeptide S 2 3 5
  • Prepro-Neuropeptide S 2

External Ids for NPS Gene

Previous GeneCards Identifiers for NPS Gene

  • GC10U900621
  • GC10P129237
  • GC10P129347
  • GC10P122920

Summaries for NPS Gene

GeneCards Summary for NPS Gene

NPS (Neuropeptide S) is a Protein Coding gene. Diseases associated with NPS include Spinocerebellar Ataxia 23 and Alcohol-Induced Mental Disorder. Among its related pathways are Signaling by GPCR and Peptide ligand-binding receptors.

UniProtKB/Swiss-Prot for NPS Gene

  • Modulates arousal and anxiety. May play an important anorexigenic role (By similarity). Binds to its receptor NPSR1 with nanomolar affinity to increase intracellular calcium concentrations (PubMed:15312648, PubMed:16790440).

Gene Wiki entry for NPS Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPS Gene

Genomics for NPS Gene

Products:

  1. Regulatory Element

Regulatory Elements for NPS Gene

Enhancers for NPS Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F127485 0.6 ENCODE 12.1 -63.7 -63718 0.2 HIC1 TEAD4 MAX MIER2 REST ZIC2 NPS GC10M127350
GH10F127486 0.6 ENCODE 10.7 -63.9 -63918 0.2 HIC1 MAX MIER2 FOS REST ZIC2 NPS GC10M127350
GH10F127944 1.3 FANTOM5 Ensembl ENCODE 1.6 +397.0 396952 3.4 MXI1 PKNOX1 JUN INSM2 ZNF266 MAX BRCA1 RFX5 ZNF366 SCRT2 ENSG00000232259 PTPRE ENSG00000227076 NPS GC10M127969
GH10F127534 0.6 Ensembl 0.4 -14.8 -14849 1.0 CTCF RFX1 MAZ ZNF654 SP3 HLF RAD21 CEBPA NPS GC10M127350
GH10F127618 0.6 ENCODE 0.2 +70.4 70419 2.9 ZNF664 CBX8 GLIS1 ZNF341 BHLHE40 INSM2 SP7 GC10M127629 NPS
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NPS on UCSC Golden Path with GeneCards custom track

Transcription factor binding sites by QIAGEN in the NPS gene promoter:

Genomic Location for NPS Gene

Chromosome:
10
Start:
127,549,349 bp from pter
End:
127,552,671 bp from pter
Size:
3,323 bases
Orientation:
Plus strand

Genomic View for NPS Gene

Genes around NPS on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPS Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NPS Gene

Proteins for NPS Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NPS Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P0C0P6-NPS_HUMAN
    Recommended name:
    Neuropeptide S
    Protein Accession:
    P0C0P6

    Protein attributes for NPS Gene

    Size:
    89 amino acids
    Molecular mass:
    10103 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPS Gene

Protein Expression for NPS Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NPS Gene

No Post-translational modifications

Other Protein References for NPS Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPS Gene

Domains & Families for NPS Gene

Gene Families for NPS Gene

HGNC:

Protein Domains for NPS Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NPS Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NPS: view

No data available for UniProtKB/Swiss-Prot for NPS Gene

Function for NPS Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for NPS Gene

UniProtKB/Swiss-Prot Function:
Modulates arousal and anxiety. May play an important anorexigenic role (By similarity). Binds to its receptor NPSR1 with nanomolar affinity to increase intracellular calcium concentrations (PubMed:15312648, PubMed:16790440).

Animal Model Products

  • Taconic Biosciences Mouse Models for NPS

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPS Gene

Localization for NPS Gene

Subcellular locations from UniProtKB/Swiss-Prot for NPS Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NPS gene
Compartment Confidence
extracellular 5
nucleus 3
plasma membrane 2
cytoskeleton 2
mitochondrion 2
endoplasmic reticulum 2
cytosol 2
golgi apparatus 2
lysosome 1
endosome 1

Gene Ontology (GO) - Cellular Components for NPS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
genes like me logo Genes that share ontologies with NPS: view

Pathways & Interactions for NPS Gene

genes like me logo Genes that share pathways with NPS: view

Interacting Proteins for NPS Gene

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)
http://string-db.org/version_10/api/image/networkList?limit=0&targetmode=proteins&caller_identity=gene_cards&network_flavor=evidence&identifiers=9606.ENSP00000381105%0d%0a9606.ENSP00000306662%0d%0a9606.ENSP00000217270%0d%0a9606.ENSP00000351755%0d%0a9606.ENSP00000332225%0d%0a9606.ENSP00000359899%0d%0a
Selected Interacting proteins: ENSP00000381105 for NPS Gene via STRING

Gene Ontology (GO) - Biological Process for NPS Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007218 neuropeptide signaling pathway IEA --
GO:0008542 visual learning IEA --
GO:0010841 positive regulation of circadian sleep/wake cycle, wakefulness IEA --
GO:0032230 positive regulation of synaptic transmission, GABAergic IEA --
GO:0045760 positive regulation of action potential IEA --
genes like me logo Genes that share ontologies with NPS: view

No data available for SIGNOR curated interactions for NPS Gene

Drugs & Compounds for NPS Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NPS Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for NPS Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPS Gene

No ASD Table

Relevant External Links for NPS Gene

GeneLoc Exon Structure for
NPS
ECgene alternative splicing isoforms for
NPS

Expression for NPS Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NPS Gene

mRNA expression in normal human tissues for NPS Gene
mRNA expression by GTEx for NPS Gene

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for NPS Gene



NURSA nuclear receptor signaling pathways regulating expression of NPS Gene:

NPS

SOURCE GeneReport for Unigene cluster for NPS Gene:

Hs.643423
genes like me logo Genes that share expression patterns with NPS: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NPS Gene

Orthologs for NPS Gene

This gene was present in the common ancestor of chordates.

Orthologs for NPS Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia NPS 34 35
  • 98.13 (n)
rat
(Rattus norvegicus)
 Mammalia Nps 34
  • 82.58 (n)
mouse
(Mus musculus)
 Mammalia Nps 34 16 35
  • 81.44 (n)
dog
(Canis familiaris)
 Mammalia NPS 35
  • 78 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia NPS 35
  • 56 (a)
 OneToOne
lizard
(Anolis carolinensis)
 Reptilia NPS 35
  • 67 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia nps 34
  • 60.85 (n)
Species where no ortholog for NPS was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPS Gene

ENSEMBL:
Gene Tree for NPS (if available)
TreeFam:
Gene Tree for NPS (if available)

Paralogs for NPS Gene

No data available for Paralogs for NPS Gene

Variants for NPS Gene

Sequence variations from dbSNP and Humsavar for NPS Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs10765131 -- 127,548,928(+) TAGAT(A/G)TTCTT upstream-variant-2KB
rs10830121 -- 127,549,800(+) GGCTC(C/T)TGCAA intron-variant
rs10830122 -- 127,549,886(+) AATCA(A/T)AGTGA intron-variant
rs10830123 -- 127,551,386(+) GTTTC(C/G)ACTTC intron-variant
rs10830124 -- 127,552,145(+) AATTC(A/C)CAGGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NPS Gene

Variant ID Type Subtype PubMed ID
nsv1048716 CNV loss 25217958
nsv7607 CNV deletion 18451855

Variation tolerance for NPS Gene

Residual Variation Intolerance Score: 77.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.26; 62.46% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NPS Gene

Human Gene Mutation Database (HGMD)
NPS
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NPS Gene

Disorders for NPS Gene

MalaCards: The human disease database

(19) MalaCards diseases for NPS Gene - From: DISEASES

Disorder Aliases PubMed IDs
spinocerebellar ataxia 23
  • spinocerebellar ataxia type 23
alcohol-induced mental disorder
  • psychoses, alcoholic
reflex sympathetic dystrophy
  • reflex sympathetic dystrophy syndrome
epicondylitis
  • andrel epicondylitis
autonomic nervous system disease
  • autonomic nervous system disorder
- elite association - COSMIC cancer census association via MalaCards
Search NPS in MalaCards View complete list of genes associated with diseases

Relevant External Links for NPS

Genetic Association Database (GAD)
NPS
Human Genome Epidemiology (HuGE) Navigator
NPS
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NPS
genes like me logo Genes that share disorders with NPS: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NPS Gene

Publications for NPS Gene

  1. Neuropeptide S: a neuropeptide promoting arousal and anxiolytic-like effects. (PMID: 15312648) Xu Y.-L. … Civelli O. (Neuron 2004) 2 3 4 64
  2. Assessment of the neuropeptide S system in anxiety disorders. (PMID: 20705147) Donner J. … Hovatta I. (Biol. Psychiatry 2010) 3 46 64
  3. Coeliac disease-associated risk variants in TNFAIP3 and REL implicate altered NF-kappaB signalling. (PMID: 19240061) Trynka G. … Wijmenga C. (Gut 2009) 3 46 64
  4. Synthesis and biological activity of human neuropeptide S analogues modified in position 2. (PMID: 18181564) Camarda V. … Salvadori S. (J. Med. Chem. 2008) 2 3 64
  5. Structure-function relationships in the neuropeptide S receptor: molecular consequences of the asthma-associated mutation N107I. (PMID: 16790440) Bernier V. … Therien A.G. (J. Biol. Chem. 2006) 3 4 64

Products for NPS Gene

Sources for NPS Gene

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