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Aliases for NPM3 Gene

Aliases for NPM3 Gene

  • Nucleophosmin/Nucleoplasmin 3 2 3
  • Nucleophosmin/Nucleoplasmin Family, Member 3 3
  • Nucleoplasmin-3 3
  • TMEM123 3
  • PORMIN 3

External Ids for NPM3 Gene

Previous GeneCards Identifiers for NPM3 Gene

  • GC10M102434
  • GC10M102774
  • GC10M103672
  • GC10M103205
  • GC10M103532
  • GC10M097171

Summaries for NPM3 Gene

Entrez Gene Summary for NPM3 Gene

  • The protein encoded by this gene is related to the nuclear chaperone phosphoproteins, nucleoplasmin and nucleophosmin. This protein is strongly expressed in diverse cell types where it localizes primarily to the nucleus. Based on its similarity to nucleoplasmin and nucleophosmin, this protein likely functions as a molecular chaperone in the cell nucleus. [provided by RefSeq, Oct 2008]

GeneCards Summary for NPM3 Gene

NPM3 (Nucleophosmin/Nucleoplasmin 3) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding. An important paralog of this gene is NPM1.

UniProtKB/Swiss-Prot for NPM3 Gene

  • May act as a chaperone

Gene Wiki entry for NPM3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPM3 Gene

Genomics for NPM3 Gene

Regulatory Elements for NPM3 Gene

Transcription factor binding sites by QIAGEN in the NPM3 gene promoter:

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NPM3 Gene

Start:
101,781,325 bp from pter
End:
101,783,413 bp from pter
Size:
2,089 bases
Orientation:
Minus strand

Genomic View for NPM3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPM3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPM3 Gene

Proteins for NPM3 Gene

  • Protein details for NPM3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O75607-NPM3_HUMAN
    Recommended name:
    Nucleoplasmin-3
    Protein Accession:
    O75607
    Secondary Accessions:
    • Q9UNY6

    Protein attributes for NPM3 Gene

    Size:
    178 amino acids
    Molecular mass:
    19344 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPM3 Gene

Proteomics data for NPM3 Gene at MOPED

Post-translational modifications for NPM3 Gene

Other Protein References for NPM3 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPM3 Gene

Domains for NPM3 Gene

Protein Domains for NPM3 Gene

Suggested Antigen Peptide Sequences for NPM3 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

O75607

UniProtKB/Swiss-Prot:

NPM3_HUMAN :
  • O75607
Family:
  • Belongs to the nucleoplasmin family.
genes like me logo Genes that share domains with NPM3: view

No data available for Gene Families for NPM3 Gene

Function for NPM3 Gene

Molecular function for NPM3 Gene

UniProtKB/Swiss-Prot Function: May act as a chaperone

Gene Ontology (GO) - Molecular Function for NPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 22190034
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with NPM3: view

Phenotypes for NPM3 Gene

GenomeRNAi human phenotypes for NPM3:
genes like me logo Genes that share phenotypes with NPM3: view

Animal Model Products

CRISPR Products

miRNA for NPM3 Gene

miRTarBase miRNAs that target NPM3

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NPM3

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for NPM3 Gene

Localization for NPM3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NPM3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NPM3 Gene COMPARTMENTS Subcellular localization image for NPM3 gene
Compartment Confidence
nucleus 5
extracellular 2
cytoskeleton 1
cytosol 1

Gene Ontology (GO) - Cellular Components for NPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IEA --
genes like me logo Genes that share ontologies with NPM3: view

Pathways for NPM3 Gene

SuperPathways for NPM3 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPM3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006364 rRNA processing IEA --
GO:0009303 rRNA transcription IEA --
genes like me logo Genes that share ontologies with NPM3: view

No data available for Pathways by source for NPM3 Gene

Transcripts for NPM3 Gene

mRNA/cDNA for NPM3 Gene

Unigene Clusters for NPM3 Gene

Nucleophosmin/nucleoplasmin 3:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NPM3

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPM3 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b
SP1: -
SP2: - -
SP3: - -
SP4:

Relevant External Links for NPM3 Gene

GeneLoc Exon Structure for
NPM3
ECgene alternative splicing isoforms for
NPM3

Expression for NPM3 Gene

mRNA expression in normal human tissues for NPM3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NPM3 Gene

SOURCE GeneReport for Unigene cluster for NPM3 Gene Hs.90691

mRNA Expression by UniProt/SwissProt for NPM3 Gene

O75607-NPM3_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expressions with NPM3: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for NPM3 Gene

Orthologs for NPM3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NPM3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NPM3 35
  • 100 (n)
  • 100 (a)
NPM3 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NPM3 35
  • 87.43 (n)
  • 91.43 (a)
NPM3 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NPM3 35
  • 88.69 (n)
  • 95.76 (a)
NPM3 36
  • 84 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Npm3 35
  • 82.29 (n)
  • 84 (a)
Npm3 16
Npm3 36
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NPM3 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NPM3 36
  • 89 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Npm3 35
  • 80.98 (n)
  • 83.44 (a)
chicken
(Gallus gallus)
Aves NPM3 35
  • 67.88 (n)
  • 64.23 (a)
NPM3 36
  • 62 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NPM3 36
  • 56 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii npm1b 36
  • 17 (a)
ManyToMany
Species with no ortholog for NPM3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NPM3 Gene

ENSEMBL:
Gene Tree for NPM3 (if available)
TreeFam:
Gene Tree for NPM3 (if available)

Paralogs for NPM3 Gene

Paralogs for NPM3 Gene

Selected SIMAP similar genes for NPM3 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for NPM3 Gene

genes like me logo Genes that share paralogs with NPM3: view

Variants for NPM3 Gene

Sequence variations from dbSNP and Humsavar for NPM3 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type MAF
rs760187 -- 101,783,520(-) CGGGT(A/C/G)CGGCT upstream-variant-2KB
rs935444 -- 101,783,203(-) AATGC(C/G)GAGGG intron-variant
rs935445 -- 101,783,202(-) ATGCG(C/G)AGGGT intron-variant
rs2592833 -- 101,783,255(-) GGAGA(A/G)GCTGA intron-variant
rs2592834 -- 101,782,859(-) CGGAG(C/G)ACGTG reference, missense

Structural Variations from Database of Genomic Variants (DGV) for NPM3 Gene

Variant ID Type Subtype PubMed ID
dgv171n67 CNV Gain 20364138

Relevant External Links for NPM3 Gene

HapMap Linkage Disequilibrium report
NPM3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NPM3 Gene

Disorders for NPM3 Gene

(1) University of Copenhagen DISEASES for NPM3 Gene

genes like me logo Genes that share disorders with NPM3: view

No data available for UniProtKB/Swiss-Prot for NPM3 Gene

Publications for NPM3 Gene

  1. Cloning, expression and nuclear localization of human NPM3, a member of the nucleophosmin/nucleoplasmin family of nuclear chaperones. (PMID: 11722795) Shackleford G.M. … MacArthur C.A. (BMC Genomics 2001) 2 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Nucleolar proteome dynamics. (PMID: 15635413) Andersen J.S. … Mann M. (Nature 2005) 3
  4. A human protein-protein interaction network: a resource for annotating the proteome. (PMID: 16169070) Stelzl U. … Wanker E.E. (Cell 2005) 3
  5. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3

Products for NPM3 Gene

Sources for NPM3 Gene

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