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Aliases for NPIPP1 Gene

Aliases for NPIPP1 Gene

  • Nuclear Pore Complex Interacting Protein Pseudogene 1 2 3 5

External Ids for NPIPP1 Gene

Previous GeneCards Identifiers for NPIPP1 Gene

  • GC00U930285
  • GC16M015203
  • GC16M015204
  • GC16M015205
  • GC16M015206
  • GC16M015208

Summaries for NPIPP1 Gene

GeneCards Summary for NPIPP1 Gene

NPIPP1 (Nuclear Pore Complex Interacting Protein Pseudogene 1) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPP1 Gene

Genomics for NPIPP1 Gene

Regulatory Elements for NPIPP1 Gene

Enhancers for NPIPP1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16G014300 1.7 FANTOM5 ENCODE dbSUPER 5.1 +817.3 817300 10.9 HDGF PKNOX1 FOXA2 MLX ZFP64 WRNIP1 ARID4B SIN3A DMAP1 YBX1 MIR193BHG NPIPP1 MKL2 MIR365A GC16P014304
GH16G015140 1.7 FANTOM5 Ensembl ENCODE dbSUPER 4.8 -21.0 -21036 8.5 ZNF76 KLF17 ZNF121 GLIS2 ZNF366 SCRT2 SP3 ZEB2 ZFP69B ZNF341 LOC100505915 PDXDC1 NPIPP1 NPIPA2 GC16P015150 MIR6511B2
GH16G014283 1.4 Ensembl ENCODE 5.7 +838.1 838094 3.7 MLX CREB3L1 ZFP64 YY1 SLC30A9 ZNF143 SP3 SSRP1 ZNF610 GLIS1 ENSG00000183458 NPIPA3 LOC100505915 NPIPA2 ENSG00000261819 BFAR PKD1P6 MIR193BHG NPIPP1 GC16P014288
GH16G014362 1.3 Ensembl ENCODE 4.9 +759.2 759166 3.3 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B SLC30A9 FOS SP5 NOMO1 NPIPP1 LINC02130 GC16M014339
GH16G015826 1.2 Ensembl ENCODE dbSUPER 5.1 -704.9 -704907 3.9 BCOR ZNF133 ZMYM3 NR2F2 ZNF664 JUND HDAC2 ADNP ZNF512 KLF9 MYH11 RNU6-213P FOPNL NPIPP1 ENSG00000227827 ENSG00000263335 NOMO3 ENSG00000280429
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NPIPP1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NPIPP1 Gene

Chromosome:
16
Start:
15,104,298 bp from pter
End:
15,123,498 bp from pter
Size:
19,201 bases
Orientation:
Minus strand

Genomic View for NPIPP1 Gene

Genes around NPIPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPP1 Gene

Proteins for NPIPP1 Gene

Post-translational modifications for NPIPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPP1 Gene

Domains & Families for NPIPP1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPIPP1 Gene

Function for NPIPP1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPP1 Gene

Localization for NPIPP1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NPIPP1 gene
Compartment Confidence
plasma membrane 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NPIPP1 Gene

Pathways & Interactions for NPIPP1 Gene

SuperPathways for NPIPP1 Gene

No Data Available

Interacting Proteins for NPIPP1 Gene

Gene Ontology (GO) - Biological Process for NPIPP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPIPP1 Gene

Drugs & Compounds for NPIPP1 Gene

No Compound Related Data Available

Transcripts for NPIPP1 Gene

mRNA/cDNA for NPIPP1 Gene

(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPP1 Gene

No ASD Table

Relevant External Links for NPIPP1 Gene

GeneLoc Exon Structure for
NPIPP1
ECgene alternative splicing isoforms for
NPIPP1

Expression for NPIPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPIPP1 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPP1 Gene

This gene is overexpressed in Brain - Cerebellum (x6.1) and Brain - Cerebellar Hemisphere (x5.5).

NURSA nuclear receptor signaling pathways regulating expression of NPIPP1 Gene:

NPIPP1
genes like me logo Genes that share expression patterns with NPIPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPP1 Gene

Orthologs for NPIPP1 Gene

Evolution for NPIPP1 Gene

ENSEMBL:
Gene Tree for NPIPP1 (if available)
TreeFam:
Gene Tree for NPIPP1 (if available)

No data available for Orthologs for NPIPP1 Gene

Paralogs for NPIPP1 Gene

No data available for Paralogs for NPIPP1 Gene

Variants for NPIPP1 Gene

Relevant External Links for NPIPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPIPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPIPP1 Gene

Disorders for NPIPP1 Gene

No disorders were found for NPIPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPIPP1 Gene

Publications for NPIPP1 Gene

No publications were found for NPIPP1 Gene.

Products for NPIPP1 Gene

Sources for NPIPP1 Gene

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