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Aliases for NPIPB9 Gene

Aliases for NPIPB9 Gene

  • Nuclear Pore Complex Interacting Protein Family Member B9 2 3 5
  • Nuclear Pore Complex Interacting Protein Family, Member B9 2

External Ids for NPIPB9 Gene

Previous GeneCards Identifiers for NPIPB9 Gene

  • GC16P028782
  • GC16P028783
  • GC16P028752

Summaries for NPIPB9 Gene

GeneCards Summary for NPIPB9 Gene

NPIPB9 (Nuclear Pore Complex Interacting Protein Family Member B9) is a Protein Coding gene. An important paralog of this gene is NPIPB7.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB9 Gene

Genomics for NPIPB9 Gene

Regulatory Elements for NPIPB9 Gene

Enhancers for NPIPB9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F028490 0.7 ENCODE 11 -248.7 -248701 6.9 HDGF PKNOX1 ARNT MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 SULT1A2 ENSG00000261766 NUPR1 SGF29 NPIPB9 CDC37P1 APOBR TUFM ENSG00000261832
GH16F028185 1.5 FANTOM5 Ensembl ENCODE 11 -551.0 -550986 12.3 HDGF PKNOX1 FEZF1 BRCA1 ZNF121 ELK1 CBX5 ZNF207 FOS ZNF263 SBK1 ENSG00000261766 NPIPB9 XPO6 ENSG00000246465 SGF29 APOBR GC16M028181 RNY1P10
GH16F027796 0.6 ENCODE 10 -946.6 -946554 0.2 ELF3 ARID4B SIN3A ZSCAN9 DNMT3B RARA CHAMP1 ZNF143 MIXL1 THAP11 NPIPB9 NPIPB7 NPIPB6 GC16M027762 GC16P027839
GH16F028291 0.6 ENCODE 10 -450.0 -449964 2.5 PKNOX1 MLX ZFP64 ARID4B SIN3A ZNF2 SLC30A9 ZNF766 ZNF143 DEK NPIPB7 SULT1A2 NPIPB9 NPIPB6 EIF3C CDC37P1 ENSG00000246465 GC16P028319
GH16F028821 0.6 ENCODE 9.8 +81.4 81404 4.4 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TUFM SMG1P2 ENSG00000260853 MIR4517 CA5AP1 SGF29 ENSG00000260367 CDC37P1 NPIPB9 NPIPB11
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NPIPB9 on UCSC Golden Path with GeneCards custom track

Genomic Location for NPIPB9 Gene

28,742,728 bp from pter
28,772,850 bp from pter
30,123 bases
Plus strand

Genomic View for NPIPB9 Gene

Genes around NPIPB9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPB9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB9 Gene

Proteins for NPIPB9 Gene

  • Protein details for NPIPB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Nuclear pore complex-interacting protein family member B9
    Protein Accession:

    Protein attributes for NPIPB9 Gene

    429 amino acids
    Molecular mass:
    49181 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB9 Gene

Post-translational modifications for NPIPB9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPB9 Gene

Domains & Families for NPIPB9 Gene

Protein Domains for NPIPB9 Gene


Graphical View of Domain Structure for InterPro Entry



  • Belongs to the NPIP family.
  • Belongs to the NPIP family.
genes like me logo Genes that share domains with NPIPB9: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for NPIPB9 Gene

Function for NPIPB9 Gene

Animal Model Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPB9 Gene

Localization for NPIPB9 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPIPB9 Gene

Pathways & Interactions for NPIPB9 Gene

SuperPathways for NPIPB9 Gene

No Data Available

Interacting Proteins for NPIPB9 Gene

Gene Ontology (GO) - Biological Process for NPIPB9 Gene


No data available for Pathways by source and SIGNOR curated interactions for NPIPB9 Gene

Transcripts for NPIPB9 Gene

mRNA/cDNA for NPIPB9 Gene

(20) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB9 Gene

No ASD Table

Relevant External Links for NPIPB9 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NPIPB9 Gene

mRNA expression in normal human tissues for NPIPB9 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB9 Gene

This gene is overexpressed in Testis (x6.5).

NURSA nuclear receptor signaling pathways regulating expression of NPIPB9 Gene:

genes like me logo Genes that share expression patterns with NPIPB9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NPIPB9 Gene

Orthologs for NPIPB9 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB9 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 92 (a)
-- 35
  • 91 (a)
-- 35
  • 89 (a)
-- 35
  • 87 (a)
-- 35
  • 71 (a)
Species where no ortholog for NPIPB9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB9 Gene

Gene Tree for NPIPB9 (if available)
Gene Tree for NPIPB9 (if available)

Paralogs for NPIPB9 Gene

Variants for NPIPB9 Gene

Sequence variations from dbSNP and Humsavar for NPIPB9 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111820095 -- 28,753,713(+) TGTGC(A/G)CCATC intron-variant, upstream-variant-2KB
rs111976270 -- 28,742,137(+) TCCAG(C/T)GAAAA intron-variant
rs112289862 -- 28,750,282(+) CGTGT(C/G)AGCGC intron-variant, upstream-variant-2KB
rs112327863 -- 28,739,879(+) TGCTC(-/TGTGTGTGTGTG)TGTGT intron-variant
rs112409659 -- 28,763,334(+) CTTTG(A/G)GTAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NPIPB9 Gene

Variant ID Type Subtype PubMed ID
dgv13n14 CNV gain 18776910
dgv2830n100 CNV gain 25217958
dgv813e212 CNV loss 25503493
esv2758640 CNV gain+loss 17122850
esv3368363 CNV duplication 20981092
nsv1059555 CNV gain 25217958
nsv1064483 CNV loss 25217958
nsv1066415 CNV gain 25217958
nsv1776 CNV deletion 18451855
nsv974890 CNV duplication 23825009
nsv978052 CNV duplication 23825009
nsv978210 CNV duplication 23825009
nsv984301 CNV duplication 23825009

Variation tolerance for NPIPB9 Gene

Gene Damage Index Score: 0.45; 9.94% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NPIPB9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NPIPB9 Gene

Disorders for NPIPB9 Gene

Relevant External Links for NPIPB9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NPIPB9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPB9 Gene

Publications for NPIPB9 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NPIPB9 Gene

Sources for NPIPB9 Gene

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