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Aliases for NPIPB9 Gene

Aliases for NPIPB9 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B9 2 3

External Ids for NPIPB9 Gene

Summaries for NPIPB9 Gene

GeneCards Summary for NPIPB9 Gene

NPIPB9 (Nuclear Pore Complex Interacting Protein Family, Member B9) is a Protein Coding gene. An important paralog of this gene is NPIPB11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB9 Gene

Genomics for NPIPB9 Gene

Genomic Location for NPIPB9 Gene

Start:
28,751,787 bp from pter
End:
28,772,850 bp from pter
Size:
21,064 bases
Orientation:
Plus strand

Genomic View for NPIPB9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB9 Gene

No data available for Regulatory Elements for NPIPB9 Gene

Proteins for NPIPB9 Gene

  • Protein details for NPIPB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F8W1W9-NPIB9_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B9
    Protein Accession:
    F8W1W9
    Secondary Accessions:

    Protein attributes for NPIPB9 Gene

    Size:
    429 amino acids
    Molecular mass:
    49181 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB9 Gene

Proteomics data for NPIPB9 Gene at MOPED

Post-translational modifications for NPIPB9 Gene

No Post-translational modifications

Other Protein References for NPIPB9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPIPB9 Gene

Domains for NPIPB9 Gene

Protein Domains for NPIPB9 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NPIB9_HUMAN
Family:
  • Belongs to the NPIP family.:
    • F8W1W9
genes like me logo Genes that share domains with NPIPB9: view

No data available for Gene Families for NPIPB9 Gene

Function for NPIPB9 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPB9 Gene

Localization for NPIPB9 Gene

No data available for Gene Ontology (GO) - Cellular Components for NPIPB9 Gene

Pathways for NPIPB9 Gene

SuperPathways for NPIPB9 Gene

No Data Available

Interacting Proteins for NPIPB9 Gene

Gene Ontology (GO) - Biological Process for NPIPB9 Gene

None

No data available for Pathways by source for NPIPB9 Gene

Transcripts for NPIPB9 Gene

mRNA/cDNA for NPIPB9 Gene

(20) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB9 Gene

No ASD Table

Relevant External Links for NPIPB9 Gene

GeneLoc Exon Structure for
NPIPB9
ECgene alternative splicing isoforms for
NPIPB9

Expression for NPIPB9 Gene

mRNA expression in normal human tissues for NPIPB9 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB9 Gene

This gene is overexpressed in Testis (6.5).
genes like me logo Genes that share expressions with NPIPB9: view

Orthologs for NPIPB9 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 71 (a)
ManyToMany
-- 37
  • 87 (a)
ManyToMany
-- 37
  • 92 (a)
ManyToMany
-- 37
  • 89 (a)
ManyToMany
-- 37
  • 91 (a)
ManyToMany
Species with no ortholog for NPIPB9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB9 Gene

ENSEMBL:
Gene Tree for NPIPB9 (if available)
TreeFam:
Gene Tree for NPIPB9 (if available)

Paralogs for NPIPB9 Gene

genes like me logo Genes that share paralogs with NPIPB9: view

Variants for NPIPB9 Gene

Sequence variations from dbSNP and Humsavar for NPIPB9 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs233640 -- 28,765,772(-) ctgtc(A/T)cacac intron-variant
rs383215 -- 28,765,857(-) gaacc(A/G)tttga intron-variant
rs389186 -- 28,761,733(+) gagtc(A/G)ggcat intron-variant
rs857295 -- 28,761,653(+) gcagg(C/T)agatc intron-variant
rs2411933 -- 28,765,808(+) ggagt(A/G)cagtg intron-variant

Relevant External Links for NPIPB9 Gene

HapMap Linkage Disequilibrium report
NPIPB9

No data available for Structural Variations from Database of Genomic Variants (DGV) for NPIPB9 Gene

Disorders for NPIPB9 Gene

No disorders were found for NPIPB9 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPB9 Gene

Publications for NPIPB9 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for NPIPB9 Gene

Sources for NPIPB9 Gene

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