Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NPIPB8 Gene

Aliases for NPIPB8 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B8 2 3

External Ids for NPIPB8 Gene

Summaries for NPIPB8 Gene

GeneCards Summary for NPIPB8 Gene

NPIPB8 (Nuclear Pore Complex Interacting Protein Family, Member B8) is a Protein Coding gene. An important paralog of this gene is NPIPB11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB8 Gene

Genomics for NPIPB8 Gene

Genomic Location for NPIPB8 Gene

Start:
28,637,654 bp from pter
End:
28,658,725 bp from pter
Size:
21,072 bases
Orientation:
Plus strand

Genomic View for NPIPB8 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPB8 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB8 Gene

No data available for Regulatory Elements for NPIPB8 Gene

Proteins for NPIPB8 Gene

  • Protein details for NPIPB8 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    E9PQR5-NPIB8_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B8
    Protein Accession:
    E9PQR5
    Secondary Accessions:

    Protein attributes for NPIPB8 Gene

    Size:
    432 amino acids
    Molecular mass:
    49617 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB8 Gene

Proteomics data for NPIPB8 Gene at MOPED

Post-translational modifications for NPIPB8 Gene

No Post-translational modifications

Other Protein References for NPIPB8 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NPIPB8 Gene

Domains for NPIPB8 Gene

Protein Domains for NPIPB8 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NPIB8_HUMAN
Family:
  • Belongs to the NPIP family.:
    • E9PQR5
genes like me logo Genes that share domains with NPIPB8: view

No data available for Gene Families for NPIPB8 Gene

Function for NPIPB8 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPB8 Gene

Localization for NPIPB8 Gene

No data available for Gene Ontology (GO) - Cellular Components for NPIPB8 Gene

Pathways for NPIPB8 Gene

SuperPathways for NPIPB8 Gene

No Data Available

Interacting Proteins for NPIPB8 Gene

Gene Ontology (GO) - Biological Process for NPIPB8 Gene

None

No data available for Pathways by source for NPIPB8 Gene

Transcripts for NPIPB8 Gene

mRNA/cDNA for NPIPB8 Gene

(15) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB8 Gene

No ASD Table

Relevant External Links for NPIPB8 Gene

GeneLoc Exon Structure for
NPIPB8
ECgene alternative splicing isoforms for
NPIPB8

Expression for NPIPB8 Gene

mRNA expression in normal human tissues for NPIPB8 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB8 Gene

This gene is overexpressed in Testis (10.5).
genes like me logo Genes that share expressions with NPIPB8: view

Orthologs for NPIPB8 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB8 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 82 (a)
ManyToMany
-- 37
  • 87 (a)
ManyToMany
-- 37
  • 85 (a)
ManyToMany
-- 37
  • 89 (a)
ManyToMany
-- 37
  • 91 (a)
ManyToMany
Species with no ortholog for NPIPB8:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB8 Gene

ENSEMBL:
Gene Tree for NPIPB8 (if available)
TreeFam:
Gene Tree for NPIPB8 (if available)

Paralogs for NPIPB8 Gene

genes like me logo Genes that share paralogs with NPIPB8: view

Variants for NPIPB8 Gene

Sequence variations from dbSNP and Humsavar for NPIPB8 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs181183 -- 28,651,879(+) gcctc(C/G)gcctc intron-variant
rs389266 -- 28,658,513(-) TTGGG(C/T)TTGGG synonymous-codon, reference
rs389271 -- 28,658,507(-) TTGGG(C/T)GATTG synonymous-codon, reference
rs1054098 -- 28,639,954(-) AGTAC(A/T)CAATG intron-variant
rs1061042 -- 28,636,905(+) CAATA(C/T)CGATT upstream-variant-2KB

Relevant External Links for NPIPB8 Gene

HapMap Linkage Disequilibrium report
NPIPB8

No data available for Structural Variations from Database of Genomic Variants (DGV) for NPIPB8 Gene

Disorders for NPIPB8 Gene

No disorders were found for NPIPB8 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPB8 Gene

Publications for NPIPB8 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4

Products for NPIPB8 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPIPB8
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPIPB8
    • Block miRNA regulation of NPIPB8 using miScript Target Protectors

    Sources for NPIPB8 Gene

    Back to Top

    Content