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Aliases for NPIPB6 Gene

Aliases for NPIPB6 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B6 2 3
  • Nuclear Pore Complex-Interacting Protein Family Member B6 3
  • Nuclear Pore Complex-Interacting Protein B Type 3
  • NPIPB 3

External Ids for NPIPB6 Gene

Summaries for NPIPB6 Gene

GeneCards Summary for NPIPB6 Gene

NPIPB6 (Nuclear Pore Complex Interacting Protein Family, Member B6) is a Protein Coding gene. An important paralog of this gene is NPIPB11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB6 Gene

Genomics for NPIPB6 Gene

Genomic Location for NPIPB6 Gene

Start:
28,342,512 bp from pter
End:
28,363,508 bp from pter
Size:
20,997 bases
Orientation:
Minus strand

Genomic View for NPIPB6 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPB6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB6 Gene

No data available for Regulatory Elements for NPIPB6 Gene

Proteins for NPIPB6 Gene

  • Protein details for NPIPB6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    E9PJ23-NPIB6_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B6
    Protein Accession:
    E9PJ23
    Secondary Accessions:

    Protein attributes for NPIPB6 Gene

    Size:
    425 amino acids
    Molecular mass:
    49162 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB6 Gene

Proteomics data for NPIPB6 Gene at MOPED

Post-translational modifications for NPIPB6 Gene

No Post-translational modifications

Other Protein References for NPIPB6 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPIPB6 Gene

Domains for NPIPB6 Gene

Protein Domains for NPIPB6 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

E9PJ23

UniProtKB/Swiss-Prot:

NPIB6_HUMAN :
  • E9PJ23
Family:
  • Belongs to the NPIP family.
genes like me logo Genes that share domains with NPIPB6: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for NPIPB6 Gene

Function for NPIPB6 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPB6 Gene

Localization for NPIPB6 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPIPB6 Gene

Pathways for NPIPB6 Gene

SuperPathways for NPIPB6 Gene

No Data Available

Interacting Proteins for NPIPB6 Gene

Gene Ontology (GO) - Biological Process for NPIPB6 Gene

None

No data available for Pathways by source for NPIPB6 Gene

Transcripts for NPIPB6 Gene

mRNA/cDNA for NPIPB6 Gene

(10) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NPIPB6

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB6 Gene

No ASD Table

Relevant External Links for NPIPB6 Gene

GeneLoc Exon Structure for
NPIPB6
ECgene alternative splicing isoforms for
NPIPB6

Expression for NPIPB6 Gene

mRNA expression in normal human tissues for NPIPB6 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB6 Gene

This gene is overexpressed in Testis (15.3).
genes like me logo Genes that share expressions with NPIPB6: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NPIPB6 Gene

Orthologs for NPIPB6 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB6 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 84 (a)
ManyToMany
-- 36
  • 81 (a)
ManyToMany
-- 36
  • 80 (a)
ManyToMany
-- 36
  • 83 (a)
ManyToMany
-- 36
  • 80 (a)
ManyToMany
Species with no ortholog for NPIPB6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB6 Gene

ENSEMBL:
Gene Tree for NPIPB6 (if available)
TreeFam:
Gene Tree for NPIPB6 (if available)

Paralogs for NPIPB6 Gene

genes like me logo Genes that share paralogs with NPIPB6: view

Variants for NPIPB6 Gene

Sequence variations from dbSNP and Humsavar for NPIPB6 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs40825 -- 28,347,369(-) GTGGA(C/T)TTCAG intron-variant, upstream-variant-2KB
rs374667 -- 28,342,777(+) TGATT(G/T)TTCCA missense, reference, downstream-variant-500B
rs399735 -- 28,364,474(+) TCGCG(G/T)GCCAG upstream-variant-2KB
rs418082 -- 28,364,834(+) CAGCA(C/G)CGACA upstream-variant-2KB
rs457403 -- 28,342,902(+) GAAGC(A/C/G)GGACA reference, missense, downstream-variant-500B

Relevant External Links for NPIPB6 Gene

HapMap Linkage Disequilibrium report
NPIPB6

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NPIPB6 Gene

Disorders for NPIPB6 Gene

No disorders were found for NPIPB6 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPB6 Gene

Publications for NPIPB6 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for NPIPB6 Gene

Sources for NPIPB6 Gene

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