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Aliases for NPIPB15 Gene

Aliases for NPIPB15 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B15 2 3
  • Nuclear Pore Complex Interacting Protein-Like 2 2 3
  • Nuclear Pore Complex-Interacting Protein-Like 2 3 4
  • NPIPL2 3 4
  • Nuclear Pore Complex-Interacting Protein Family Member B15 3
  • A-761H5.4 3

External Ids for NPIPB15 Gene

Previous Symbols for NPIPB15 Gene

  • NPIPL2

Summaries for NPIPB15 Gene

GeneCards Summary for NPIPB15 Gene

NPIPB15 (Nuclear Pore Complex Interacting Protein Family, Member B15) is a Protein Coding gene. An important paralog of this gene is NPIPB11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB15 Gene

Genomics for NPIPB15 Gene

Genomic Location for NPIPB15 Gene

Start:
74,377,290 bp from pter
End:
74,392,115 bp from pter
Size:
14,826 bases
Orientation:
Plus strand

Genomic View for NPIPB15 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPB15 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB15 Gene

No data available for Regulatory Elements for NPIPB15 Gene

Proteins for NPIPB15 Gene

  • Protein details for NPIPB15 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    A6NHN6-NPB15_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B15
    Protein Accession:
    A6NHN6
    Secondary Accessions:
    • C9J9U8

    Protein attributes for NPIPB15 Gene

    Size:
    443 amino acids
    Molecular mass:
    51267 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB15 Gene

Proteomics data for NPIPB15 Gene at MOPED

Post-translational modifications for NPIPB15 Gene

  • Modification sites at PhosphoSitePlus
  • Glycosylation at Asn111

Other Protein References for NPIPB15 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NPIPB15 Gene

Domains for NPIPB15 Gene

Protein Domains for NPIPB15 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NPB15_HUMAN
Family:
  • Belongs to the NPIP family.:
    • A6NHN6
genes like me logo Genes that share domains with NPIPB15: view

No data available for Gene Families for NPIPB15 Gene

Function for NPIPB15 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPB15 Gene

Localization for NPIPB15 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NPIPB15 Gene

Secreted.

Gene Ontology (GO) - Cellular Components for NPIPB15 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
genes like me logo Genes that share ontologies with NPIPB15: view

Pathways for NPIPB15 Gene

SuperPathways for NPIPB15 Gene

No Data Available

Interacting Proteins for NPIPB15 Gene

Gene Ontology (GO) - Biological Process for NPIPB15 Gene

None

No data available for Pathways by source for NPIPB15 Gene

Transcripts for NPIPB15 Gene

mRNA/cDNA for NPIPB15 Gene

(20) REFSEQ mRNAs :
(6) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB15 Gene

No ASD Table

Relevant External Links for NPIPB15 Gene

GeneLoc Exon Structure for
NPIPB15
ECgene alternative splicing isoforms for
NPIPB15

Expression for NPIPB15 Gene

mRNA expression in normal human tissues for NPIPB15 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB15 Gene

This gene is overexpressed in Testis (4.8).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for NPIPB15 Gene

genes like me logo Genes that share expressions with NPIPB15: view

Orthologs for NPIPB15 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB15 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 74 (a)
ManyToMany
-- 37
  • 89 (a)
ManyToMany
-- 37
  • 83 (a)
ManyToMany
-- 37
  • 87 (a)
ManyToMany
-- 37
  • 88 (a)
ManyToMany
Species with no ortholog for NPIPB15:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB15 Gene

ENSEMBL:
Gene Tree for NPIPB15 (if available)
TreeFam:
Gene Tree for NPIPB15 (if available)

Paralogs for NPIPB15 Gene

genes like me logo Genes that share paralogs with NPIPB15: view

Variants for NPIPB15 Gene

Sequence variations from dbSNP and Humsavar for NPIPB15 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs1808423 -- 74,382,887(-) ATACC(A/G)AAAAT intron-variant
rs1941226 -- 74,380,931(+) gcctg(C/T)cagga intron-variant
rs3096406 -- 74,378,000(-) AGCCA(A/G)ATGAG synonymous-codon, reference
rs3096407 -- 74,377,998(-) CCAAA(A/T)GAGGA reference, missense
rs3096408 -- 74,377,944(-) GAGGC(A/G)GCCAG intron-variant

Relevant External Links for NPIPB15 Gene

HapMap Linkage Disequilibrium report
NPIPB15

No data available for Structural Variations from Database of Genomic Variants (DGV) for NPIPB15 Gene

Disorders for NPIPB15 Gene

No disorders were found for NPIPB15 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPB15 Gene

Publications for NPIPB15 Gene

  1. Genome duplications and other features in 12 Mb of DNA sequence from human chromosome 16p and 16q. (PMID: 10493829) Loftus B.J. … Adams M.D. (Genomics 1999) 3
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for NPIPB15 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPIPB15
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPIPB15
    • Block miRNA regulation of NPIPB15 using miScript Target Protectors

    Sources for NPIPB15 Gene

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