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Aliases for NPIPB11 Gene

Aliases for NPIPB11 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B11 2 3
  • Nuclear Pore Complex-Interacting Protein Family Member B11 3
  • NPIP 3

External Ids for NPIPB11 Gene

Summaries for NPIPB11 Gene

GeneCards Summary for NPIPB11 Gene

NPIPB11 (Nuclear Pore Complex Interacting Protein Family, Member B11) is a Protein Coding gene. An important paralog of this gene is ENSG00000233024.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB11 Gene

Genomics for NPIPB11 Gene

Genomic Location for NPIPB11 Gene

Start:
29,381,303 bp from pter
End:
29,404,786 bp from pter
Size:
23,484 bases
Orientation:
Minus strand

Genomic View for NPIPB11 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPB11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB11 Gene

No data available for Regulatory Elements for NPIPB11 Gene

Proteins for NPIPB11 Gene

  • Protein details for NPIPB11 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    E5RHQ5-NPB11_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B11
    Protein Accession:
    E5RHQ5
    Secondary Accessions:

    Protein attributes for NPIPB11 Gene

    Size:
    1161 amino acids
    Molecular mass:
    129208 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB11 Gene

Proteomics data for NPIPB11 Gene at MOPED

Post-translational modifications for NPIPB11 Gene

No Post-translational modifications

Other Protein References for NPIPB11 Gene

ENSEMBL proteins:

No data available for DME Specific Peptides for NPIPB11 Gene

Domains for NPIPB11 Gene

Protein Domains for NPIPB11 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NPB11_HUMAN
Family:
  • Belongs to the NPIP family.:
    • E5RHQ5
genes like me logo Genes that share domains with NPIPB11: view

No data available for Gene Families for NPIPB11 Gene

Function for NPIPB11 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPB11 Gene

Localization for NPIPB11 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NPIPB11 Gene

Membrane; Single-pass membrane protein.

Gene Ontology (GO) - Cellular Components for NPIPB11 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NPIPB11: view

Pathways for NPIPB11 Gene

SuperPathways for NPIPB11 Gene

No Data Available

Interacting Proteins for NPIPB11 Gene

Gene Ontology (GO) - Biological Process for NPIPB11 Gene

None

No data available for Pathways by source for NPIPB11 Gene

Transcripts for NPIPB11 Gene

mRNA/cDNA for NPIPB11 Gene

(2) REFSEQ mRNAs :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB11 Gene

No ASD Table

Relevant External Links for NPIPB11 Gene

GeneLoc Exon Structure for
NPIPB11
ECgene alternative splicing isoforms for
NPIPB11

Expression for NPIPB11 Gene

mRNA expression in normal human tissues for NPIPB11 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for NPIPB11 Gene

genes like me logo Genes that share expressions with NPIPB11: view

Orthologs for NPIPB11 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB11 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 73 (a)
ManyToMany
-- 37
  • 74 (a)
ManyToMany
LOC750787 36
  • 91.38 (n)
  • 83.45 (a)
Species with no ortholog for NPIPB11:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB11 Gene

ENSEMBL:
Gene Tree for NPIPB11 (if available)
TreeFam:
Gene Tree for NPIPB11 (if available)

Paralogs for NPIPB11 Gene

genes like me logo Genes that share paralogs with NPIPB11: view

Variants for NPIPB11 Gene

Sequence variations from dbSNP and Humsavar for NPIPB11 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs166294 -- 29,402,724(-) acaca(C/G)aGAGA intron-variant
rs185409 -- 29,393,180(+) TCATT(C/G)AAAAT intron-variant
rs187279 -- 29,402,471(-) caccg(C/T)ggcct intron-variant
rs194458 -- 29,402,245(-) TGCAT(C/T)ATGAA intron-variant
rs257867 -- 29,402,001(-) CGGCA(C/G)GCTAG intron-variant

Relevant External Links for NPIPB11 Gene

HapMap Linkage Disequilibrium report
NPIPB11

No data available for Structural Variations from Database of Genomic Variants (DGV) for NPIPB11 Gene

Disorders for NPIPB11 Gene

No disorders were found for NPIPB11 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPB11 Gene

Publications for NPIPB11 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4

Products for NPIPB11 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPIPB11
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPIPB11
    • Block miRNA regulation of NPIPB11 using miScript Target Protectors

    Sources for NPIPB11 Gene

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