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Aliases for NPIPA5 Gene

Aliases for NPIPA5 Gene

  • Nuclear Pore Complex Interacting Protein Family, Member A5 2 3
  • Nuclear Pore Complex-Interacting Protein Family Member A5 3
  • NPIP 3

External Ids for NPIPA5 Gene

Summaries for NPIPA5 Gene

GeneCards Summary for NPIPA5 Gene

NPIPA5 (Nuclear Pore Complex Interacting Protein Family, Member A5) is a Protein Coding gene. An important paralog of this gene is NPIPB11.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPA5 Gene

Genomics for NPIPA5 Gene

Genomic Location for NPIPA5 Gene

Start:
15,363,624 bp from pter
End:
15,413,398 bp from pter
Size:
49,775 bases
Orientation:
Minus strand

Genomic View for NPIPA5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPIPA5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPA5 Gene

No data available for Regulatory Elements for NPIPA5 Gene

Proteins for NPIPA5 Gene

  • Protein details for NPIPA5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    E9PKD4-NPIA5_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member A5
    Protein Accession:
    E9PKD4
    Secondary Accessions:
    • Q0P618

    Protein attributes for NPIPA5 Gene

    Size:
    350 amino acids
    Molecular mass:
    40105 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for NPIPA5 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NPIPA5 Gene

Proteomics data for NPIPA5 Gene at MOPED

Post-translational modifications for NPIPA5 Gene

No Post-translational modifications

Other Protein References for NPIPA5 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPIPA5 Gene

Domains for NPIPA5 Gene

Protein Domains for NPIPA5 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

NPIA5_HUMAN
Family:
  • Belongs to the NPIP family.:
    • E9PKD4
genes like me logo Genes that share domains with NPIPA5: view

No data available for Gene Families for NPIPA5 Gene

Function for NPIPA5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPIPA5 Gene

Localization for NPIPA5 Gene

No data available for Gene Ontology (GO) - Cellular Components for NPIPA5 Gene

Pathways for NPIPA5 Gene

SuperPathways for NPIPA5 Gene

No Data Available

Interacting Proteins for NPIPA5 Gene

Gene Ontology (GO) - Biological Process for NPIPA5 Gene

None

No data available for Pathways by source for NPIPA5 Gene

Transcripts for NPIPA5 Gene

mRNA/cDNA for NPIPA5 Gene

(22) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPA5 Gene

No ASD Table

Relevant External Links for NPIPA5 Gene

GeneLoc Exon Structure for
NPIPA5
ECgene alternative splicing isoforms for
NPIPA5

Expression for NPIPA5 Gene

mRNA expression in normal human tissues for NPIPA5 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPA5 Gene

This gene is overexpressed in Brain - Cerebellum (5.2) and Brain - Cerebellar Hemisphere (4.3).
genes like me logo Genes that share expressions with NPIPA5: view

Orthologs for NPIPA5 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPA5 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 83 (a)
OneToMany
Species with no ortholog for NPIPA5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPA5 Gene

ENSEMBL:
Gene Tree for NPIPA5 (if available)
TreeFam:
Gene Tree for NPIPA5 (if available)

Paralogs for NPIPA5 Gene

Pseudogenes.org Pseudogenes for NPIPA5 Gene

genes like me logo Genes that share paralogs with NPIPA5: view

Variants for NPIPA5 Gene

Sequence variations from dbSNP and Humsavar for NPIPA5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs153005 -- 15,392,491(+) tgggc(A/C)aggac intron-variant
rs153006 -- 15,393,260(+) catgg(A/G)tgaag intron-variant
rs153007 -- 15,393,351(+) aacaa(A/T)gagaa intron-variant
rs166133 -- 15,391,464(+) CTACC(A/G)TCTTA intron-variant
rs168768 -- 15,383,203(+) catgt(A/G)agttt upstream-variant-2KB, intron-variant

Relevant External Links for NPIPA5 Gene

HapMap Linkage Disequilibrium report
NPIPA5

No data available for Structural Variations from Database of Genomic Variants (DGV) for NPIPA5 Gene

Disorders for NPIPA5 Gene

No disorders were found for NPIPA5 Gene.

No data available for UniProtKB/Swiss-Prot for NPIPA5 Gene

Publications for NPIPA5 Gene

  1. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang A.G. … Kim N.S. (Biochem. Biophys. Res. Commun. 2006) 3
  2. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3
  3. Novel retinal and cone photoreceptor transcripts revealed by human macular expression profiling. (PMID: 18055785) Hornan D.M. … Webster A.R. (Invest. Ophthalmol. Vis. Sci. 2007) 3
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4

Products for NPIPA5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPIPA5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPIPA5
    • Block miRNA regulation of NPIPA5 using miScript Target Protectors

    Sources for NPIPA5 Gene

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