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Aliases for NPIPA3 Gene

Aliases for NPIPA3 Gene

  • Nuclear Pore Complex Interacting Protein Family Member A3 2 3 5
  • Nuclear Pore Complex Interacting Protein Family, Member A3 2

External Ids for NPIPA3 Gene

Previous GeneCards Identifiers for NPIPA3 Gene

  • GC16P014857
  • GC16P014869

Summaries for NPIPA3 Gene

GeneCards Summary for NPIPA3 Gene

NPIPA3 (Nuclear Pore Complex Interacting Protein Family Member A3) is a Protein Coding gene. An important paralog of this gene is NPIPA2.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPA3 Gene

Genomics for NPIPA3 Gene

Regulatory Elements for NPIPA3 Gene

Enhancers around NPIPA3 on UCSC Golden Path with GeneCards custom track

Genomic Location for NPIPA3 Gene

14,706,473 bp from pter
14,726,338 bp from pter
19,866 bases
Plus strand

Genomic View for NPIPA3 Gene

Genes around NPIPA3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPA3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPA3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPA3 Gene

Proteins for NPIPA3 Gene

  • Protein details for NPIPA3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Nuclear pore complex-interacting protein family member A3
    Protein Accession:

    Protein attributes for NPIPA3 Gene

    350 amino acids
    Molecular mass:
    40061 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPA3 Gene

Post-translational modifications for NPIPA3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPA3 Gene

Domains & Families for NPIPA3 Gene

Protein Domains for NPIPA3 Gene


Graphical View of Domain Structure for InterPro Entry



  • Belongs to the NPIP family.
  • Belongs to the NPIP family.
genes like me logo Genes that share domains with NPIPA3: view

No data available for Gene Families and Suggested Antigen Peptide Sequences for NPIPA3 Gene

Function for NPIPA3 Gene

Animal Model Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPA3 Gene

Localization for NPIPA3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPIPA3 Gene

Pathways & Interactions for NPIPA3 Gene

SuperPathways for NPIPA3 Gene

No Data Available

Interacting Proteins for NPIPA3 Gene

Gene Ontology (GO) - Biological Process for NPIPA3 Gene


No data available for Pathways by source and SIGNOR curated interactions for NPIPA3 Gene

Transcripts for NPIPA3 Gene

mRNA/cDNA for NPIPA3 Gene

(14) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPA3 Gene

No ASD Table

Relevant External Links for NPIPA3 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NPIPA3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NPIPA3 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPA3 Gene

This gene is overexpressed in Brain - Cerebellum (x6.1) and Brain - Cerebellar Hemisphere (x5.0).

NURSA nuclear receptor signaling pathways regulating expression of NPIPA3 Gene:

genes like me logo Genes that share expression patterns with NPIPA3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NPIPA3 Gene

Orthologs for NPIPA3 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPA3 Gene

Organism Taxonomy Gene Similarity Type Details
(Pan troglodytes)
Mammalia -- 35
  • 84 (a)
Species where no ortholog for NPIPA3 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPA3 Gene

Gene Tree for NPIPA3 (if available)
Gene Tree for NPIPA3 (if available)

Paralogs for NPIPA3 Gene

Variants for NPIPA3 Gene

Sequence variations from dbSNP and Humsavar for NPIPA3 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs111888895 -- 14,717,579(+) TTTGT(A/G)TATTT intron-variant
rs113099505 -- 14,721,215(+) TCCCA(A/T)TGTGC intron-variant
rs200000305 -- 14,726,177(+) GTCTG(C/T)TCACT intron-variant, downstream-variant-500B, reference, missense
rs200350422 -- 14,710,035(+) TATAT(A/T)TTTTT intron-variant, upstream-variant-2KB
rs200682125 -- 14,725,900(+) GCAGC(A/G)GAGCA intron-variant, downstream-variant-500B, reference, synonymous-codon, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NPIPA3 Gene

Variant ID Type Subtype PubMed ID
dgv2738n100 CNV gain 25217958
dgv2740n100 CNV loss 25217958
dgv2741n100 CNV gain+loss 25217958
dgv2742n100 CNV gain 25217958
dgv4916n54 CNV loss 21841781
esv2758632 CNV gain+loss 17122850
esv2760416 CNV gain+loss 21179565
esv2762254 CNV gain+loss 21179565
esv28787 CNV gain+loss 19812545
nsv1141276 CNV duplication 24896259
nsv984262 CNV duplication 23825009
nsv978187 CNV duplication 23825009
nsv952928 CNV deletion 24416366
nsv952927 CNV deletion 24416366
nsv833144 CNV gain 17160897
nsv821150 CNV deletion 20802225
nsv7277 OTHER inversion 18451855
nsv511045 OTHER complex 20534489
nsv510676 CNV deletion 20534489
nsv1740 CNV deletion 18451855
nsv1160345 CNV duplication 26073780
nsv1160344 CNV deletion 26073780
nsv1153585 CNV duplication 26484159
nsv1144757 CNV deletion 24896259
nsv1143811 CNV deletion 24896259
nsv1141277 CNV duplication 24896259

Relevant External Links for NPIPA3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPIPA3 Gene

Disorders for NPIPA3 Gene

Relevant External Links for NPIPA3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NPIPA3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPA3 Gene

Publications for NPIPA3 Gene

  1. Novel retinal and cone photoreceptor transcripts revealed by human macular expression profiling. (PMID: 18055785) Hornan D.M. … Webster A.R. (Invest. Ophthalmol. Vis. Sci. 2007) 3 64
  2. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 4 64

Products for NPIPA3 Gene

Sources for NPIPA3 Gene

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