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Aliases for NPIP Gene

Aliases for NPIP Gene

  • Nuclear Pore Complex Interacting Protein Family, Member A1 Pseudogene 3
  • CTB-134H23.2 5

External Ids for NPIP Gene

Previous GeneCards Identifiers for NPIP Gene

  • GC16P014754
  • GC16P015695
  • GC16P014951
  • GC16P014997
  • GC16P016397
  • GC16P014930
  • GC16P014938
  • GC16P015017
  • GC16M014840
  • GC16P014844

Summaries for NPIP Gene

GeneCards Summary for NPIP Gene

NPIP (Nuclear Pore Complex Interacting Protein Family, Member A1 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIP Gene

Genomics for NPIP Gene

Regulatory Elements for NPIP Gene

Enhancers for NPIP Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NPIP on UCSC Golden Path with GeneCards custom track

Genomic Location for NPIP Gene

Chromosome:
16
Start:
29,037,834 bp from pter
End:
29,052,726 bp from pter
Size:
14,893 bases
Orientation:
Plus strand

Genomic View for NPIP Gene

Genes around NPIP on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIP Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIP Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIP Gene

Proteins for NPIP Gene

  • Protein details for NPIP Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A067ZUK6
    Recommended name:
    Nuclear pore complex-interacting protein
    Protein Accession:
    A0A067ZUK6

    Protein attributes for NPIP Gene

    Size:
    208 amino acids
    Molecular mass:
    24153 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIP Gene

Proteomics data for NPIP Gene at MOPED

Post-translational modifications for NPIP Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIP Gene

Domains & Families for NPIP Gene

Protein Domains for NPIP Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NPIP Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NPIP: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NPIP Gene

Function for NPIP Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIP Gene

Localization for NPIP Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NPIP Gene COMPARTMENTS Subcellular localization image for NPIP gene
Compartment Confidence
nucleus 4
cytosol 3
endoplasmic reticulum 1
extracellular 1
mitochondrion 1
peroxisome 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NPIP Gene

Pathways & Interactions for NPIP Gene

SuperPathways for NPIP Gene

No Data Available

Interacting Proteins for NPIP Gene

Gene Ontology (GO) - Biological Process for NPIP Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPIP Gene

Drugs & Compounds for NPIP Gene

No Compound Related Data Available

Transcripts for NPIP Gene

mRNA/cDNA for NPIP Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIP Gene

No ASD Table

Relevant External Links for NPIP Gene

GeneLoc Exon Structure for
NPIP

Expression for NPIP Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for NPIP Gene

Orthologs for NPIP Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIP Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 71 (a)
ManyToMany
-- 36
  • 91 (a)
ManyToMany
-- 36
  • 85 (a)
ManyToMany
-- 36
  • 89 (a)
ManyToMany
-- 36
  • 92 (a)
ManyToMany
Species with no ortholog for NPIP:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIP Gene

ENSEMBL:
Gene Tree for NPIP (if available)
TreeFam:
Gene Tree for NPIP (if available)

Paralogs for NPIP Gene

(1) SIMAP similar genes for NPIP Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NPIP: view

No data available for Paralogs for NPIP Gene

Variants for NPIP Gene

Structural Variations from Database of Genomic Variants (DGV) for NPIP Gene

Variant ID Type Subtype PubMed ID
dgv811e1 CNV Complex 17122850
nsv905356 CNV Gain 21882294
dgv812e1 CNV Complex 17122850
nsv511045 OTHER Complex 20534489
nsv7277 OTHER Inversion 18451855
dgv813e1 CNV Complex 17122850
esv32598 CNV Gain 17666407
dgv2604n71 CNV Gain 21882294
nsv433435 CNV Gain 18776910
nsv905361 CNV Gain 21882294
nsv905362 CNV Loss 21882294
dgv814e1 CNV Complex 17122850
essv12354 CNV CNV 17122850
nsv499081 OTHER Inversion 21111241
esv22206 CNV Gain+Loss 19812545
nsv442710 CNV CNV 18776908
nsv136 OTHER Inversion 15895083
dgv2n1 OTHER Inversion 15895083
dgv2605n71 CNV Gain 21882294
nsv819280 CNV Loss 19587683
nsv499138 OTHER Inversion 21111241
nsv905369 CNV Loss 21882294
esv2631582 CNV Gain 19546169
nsv9356 CNV Gain 18304495
nsv471384 CNV Duplication 19718026
nsv905370 CNV Gain 21882294
dgv2606n71 CNV Loss 21882294
dgv2607n71 CNV Gain 21882294
nsv905374 CNV Gain 21882294

Variation tolerance for NPIP Gene

Gene Damage Index Score: 5.68; 72.95% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar and Relevant External Links for NPIP Gene

Disorders for NPIP Gene

No disorders were found for NPIP Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPIP Gene

Publications for NPIP Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 67

Products for NPIP Gene

Sources for NPIP Gene

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