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Aliases for NPHP3-AS1 Gene

Subcategory (RNA class) for NPHP3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NPHP3-AS1 Gene

  • NPHP3 Antisense RNA 1 2 3
  • NPHP3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 119 2
  • NCRNA00119 3

External Ids for NPHP3-AS1 Gene

ORGUL Members for NPHP3-AS1 Gene

Previous HGNC Symbols for NPHP3-AS1 Gene

  • NCRNA00119

Previous GeneCards Identifiers for NPHP3-AS1 Gene

  • GC03P132442

Summaries for NPHP3-AS1 Gene

GeneCards Summary for NPHP3-AS1 Gene

NPHP3-AS1 (NPHP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPHP3-AS1 Gene

Genomics for NPHP3-AS1 Gene

Genomic Location for NPHP3-AS1 Gene

Start:
132,721,750 bp from pter
End:
132,874,223 bp from pter
Size:
152,474 bases
Orientation:
Plus strand

Genomic View for NPHP3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPHP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPHP3-AS1 Gene

No data available for Regulatory Elements for NPHP3-AS1 Gene

Proteins for NPHP3-AS1 Gene

Post-translational modifications for NPHP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPHP3-AS1 Gene

Domains for NPHP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Function for NPHP3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPHP3-AS1 Gene

Localization for NPHP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NPHP3-AS1 Gene

Pathways for NPHP3-AS1 Gene

SuperPathways for NPHP3-AS1 Gene

No Data Available

Interacting Proteins for NPHP3-AS1 Gene

Gene Ontology (GO) - Biological Process for NPHP3-AS1 Gene

None

No data available for Pathways by source for NPHP3-AS1 Gene

Transcripts for NPHP3-AS1 Gene

mRNA/cDNA for NPHP3-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPHP3-AS1 Gene

NPHP3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NPHP3-AS1 Gene

No ASD Table

Relevant External Links for NPHP3-AS1 Gene

GeneLoc Exon Structure for
NPHP3-AS1
ECgene alternative splicing isoforms for
NPHP3-AS1

Expression for NPHP3-AS1 Gene

mRNA expression in normal human tissues for NPHP3-AS1 Gene

SOURCE GeneReport for Unigene cluster for NPHP3-AS1 Gene Hs.586111

genes like me logo Genes that share expressions with NPHP3-AS1: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Expression partners for NPHP3-AS1 Gene

Orthologs for NPHP3-AS1 Gene

Evolution for NPHP3-AS1 Gene

ENSEMBL:
Gene Tree for NPHP3-AS1 (if available)
TreeFam:
Gene Tree for NPHP3-AS1 (if available)

No data available for Orthologs for NPHP3-AS1 Gene

Paralogs for NPHP3-AS1 Gene

No data available for Paralogs for NPHP3-AS1 Gene

Variants for NPHP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPHP3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs28529492 -- 132,860,437(+) CATAG(A/G)TAGAC intron-variant
rs28552990 -- 132,830,275(+) TTTCC(C/T)TTTTT intron-variant
rs28558443 -- 132,803,808(+) AGCCC(C/T)CTCCC intron-variant
rs28439990 -- 132,837,071(+) GACTA(A/C)AGGCG intron-variant
rs28429095 -- 132,848,032(+) GTTAA(C/G)AAATG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NPHP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv517045 CNV Loss 19592680
esv25640 CNV Loss 19812545
nsv460856 CNV Gain 19166990
nsv877501 CNV Loss 21882294
esv273442 CNV Insertion 20981092
esv268475 CNV Insertion 20981092

Relevant External Links for NPHP3-AS1 Gene

HapMap Linkage Disequilibrium report
NPHP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Disorders for NPHP3-AS1 Gene

No disorders were found for NPHP3-AS1 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for NPHP3-AS1 Gene

Publications for NPHP3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for NPHP3-AS1 Gene

Sources for NPHP3-AS1 Gene

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