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Aliases for NPHP3-AS1 Gene

Subcategory (RNA class) for NPHP3-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NPHP3-AS1 Gene

  • NPHP3 Antisense RNA 1 2 3
  • NPHP3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 119 2
  • NCRNA00119 3

External Ids for NPHP3-AS1 Gene

ORGUL Members for NPHP3-AS1 Gene

Previous Symbols for NPHP3-AS1 Gene

  • NCRNA00119

Summaries for NPHP3-AS1 Gene

GeneCards Summary for NPHP3-AS1 Gene

NPHP3-AS1 (NPHP3 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPHP3-AS1 Gene

Genomics for NPHP3-AS1 Gene

Genomic Location for NPHP3-AS1 Gene

Start:
132,721,750 bp from pter
End:
132,874,223 bp from pter
Size:
152,474 bases
Orientation:
Plus strand

Genomic View for NPHP3-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPHP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPHP3-AS1 Gene

No data available for Regulatory Elements for NPHP3-AS1 Gene

Proteins for NPHP3-AS1 Gene

Post-translational modifications for NPHP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPHP3-AS1 Gene

Domains for NPHP3-AS1 Gene

Gene Families for NPHP3-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with NPHP3-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Function for NPHP3-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NPHP3-AS1 Gene

Localization for NPHP3-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for NPHP3-AS1 Gene

Pathways for NPHP3-AS1 Gene

SuperPathways for NPHP3-AS1 Gene

No Data Available

Interacting Proteins for NPHP3-AS1 Gene

Gene Ontology (GO) - Biological Process for NPHP3-AS1 Gene

None

No data available for Pathways by source for NPHP3-AS1 Gene

Transcripts for NPHP3-AS1 Gene

mRNA/cDNA for NPHP3-AS1 Gene

(4) Additional mRNA sequences :
(4) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPHP3-AS1 Gene

NPHP3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NPHP3-AS1 Gene

No ASD Table

Relevant External Links for NPHP3-AS1 Gene

GeneLoc Exon Structure for
NPHP3-AS1
ECgene alternative splicing isoforms for
NPHP3-AS1

Expression for NPHP3-AS1 Gene

mRNA expression in normal human tissues for NPHP3-AS1 Gene

SOURCE GeneReport for Unigene cluster for NPHP3-AS1 Gene Hs.586111

genes like me logo Genes that share expressions with NPHP3-AS1: view

Orthologs for NPHP3-AS1 Gene

Evolution for NPHP3-AS1 Gene

ENSEMBL:
Gene Tree for NPHP3-AS1 (if available)
TreeFam:
Gene Tree for NPHP3-AS1 (if available)

No data available for Orthologs for NPHP3-AS1 Gene

Paralogs for NPHP3-AS1 Gene

No data available for Paralogs for NPHP3-AS1 Gene

Variants for NPHP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPHP3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs719299 -- 132,775,411(-) GAGCA(C/T)GCCAA intron-variant
rs719300 -- 132,775,603(-) TGAAT(A/G)TGAGG intron-variant
rs723481 -- 132,865,667(-) TAGCT(A/T)TTGGG intron-variant
rs747328 -- 132,724,817(-) tatga(C/T)ctctt intron-variant
rs899432 -- 132,738,551(+) TTCCT(A/G)GAGAT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NPHP3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv517045 CNV Loss 19592680
esv25640 CNV Loss 19812545
nsv460856 CNV Gain 19166990
nsv877501 CNV Loss 21882294
esv273442 CNV Insertion 20981092
esv268475 CNV Insertion 20981092

Relevant External Links for NPHP3-AS1 Gene

HapMap Linkage Disequilibrium report
NPHP3-AS1

Disorders for NPHP3-AS1 Gene

No disorders were found for NPHP3-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Publications for NPHP3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PMID: 21139048) Danielsen J.M. … Nielsen M.L. (Mol. Cell Proteomics 2011) 3
  3. Systematic and quantitative assessment of the ubiquitin-modified proteome. (PMID: 21906983) Kim W. … Gygi S.P. (Mol. Cell 2011) 3

Products for NPHP3-AS1 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPHP3-AS1
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPHP3-AS1
    • Block miRNA regulation of NPHP3-AS1 using miScript Target Protectors

    Sources for NPHP3-AS1 Gene

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