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Aliases for NPHP3-AS1 Gene

Subcategory (RNA class) for NPHP3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NPHP3-AS1 Gene

  • NPHP3 Antisense RNA 1 2 3 5
  • NPHP3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 119 2
  • NCRNA00119 3

External Ids for NPHP3-AS1 Gene

Previous HGNC Symbols for NPHP3-AS1 Gene

  • NCRNA00119

Previous GeneCards Identifiers for NPHP3-AS1 Gene

  • GC03P132442

Summaries for NPHP3-AS1 Gene

GeneCards Summary for NPHP3-AS1 Gene

NPHP3-AS1 (NPHP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NPHP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPHP3-AS1 Gene

Genomics for NPHP3-AS1 Gene

Regulatory Elements for NPHP3-AS1 Gene

Enhancers for NPHP3-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03H132662 0.7 ENCODE 0.2 -59.4 -59399 0 SOX5 SOX13 FOXA2 FOXA3 DPF2 ZBTB40 FOXA1 ZNF217 CTBP1 GATA3 ACAD11 NPHP3-AS1
GH03H132667 0.6 ENCODE 0.2 -53.4 -53440 1 SMARCE1 MTA2 TAL1 DPF2 GABPA TCF12 SMARCA4 NCOR1 KDM1A CREM NPHP3 ACAD11 NPHP3-AS1
GH03H132703 0.2 ENCODE 0.4 -17.9 -17859 0 TFP1 TOPBP1 NPHP3-AS1 ACAD11
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NPHP3-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NPHP3-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158546 450 2401 HDGF ATF1 ARID4B SIN3A BRCA1 YY1 ETS1 ZNF121 ELK1 ZNF143

Genomic Location for NPHP3-AS1 Gene

Chromosome:
3
Start:
132,721,750 bp from pter
End:
132,874,223 bp from pter
Size:
152,474 bases
Orientation:
Plus strand

Genomic View for NPHP3-AS1 Gene

Genes around NPHP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPHP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPHP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPHP3-AS1 Gene

Proteins for NPHP3-AS1 Gene

Post-translational modifications for NPHP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPHP3-AS1 Gene

Domains & Families for NPHP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Function for NPHP3-AS1 Gene

Phenotypes From GWAS Catalog for NPHP3-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for NPHP3-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPHP3-AS1 Gene

Localization for NPHP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPHP3-AS1 Gene

Pathways & Interactions for NPHP3-AS1 Gene

SuperPathways for NPHP3-AS1 Gene

No Data Available

Interacting Proteins for NPHP3-AS1 Gene

Gene Ontology (GO) - Biological Process for NPHP3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPHP3-AS1 Gene

Drugs & Compounds for NPHP3-AS1 Gene

No Compound Related Data Available

Transcripts for NPHP3-AS1 Gene

mRNA/cDNA for NPHP3-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPHP3-AS1 Gene

NPHP3 antisense RNA 1:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for NPHP3-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for NPHP3-AS1 Gene

No ASD Table

Relevant External Links for NPHP3-AS1 Gene

GeneLoc Exon Structure for
NPHP3-AS1
ECgene alternative splicing isoforms for
NPHP3-AS1

Expression for NPHP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPHP3-AS1 Gene

SOURCE GeneReport for Unigene cluster for NPHP3-AS1 Gene:

Hs.586111
genes like me logo Genes that share expression patterns with NPHP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPHP3-AS1 Gene

Orthologs for NPHP3-AS1 Gene

Evolution for NPHP3-AS1 Gene

ENSEMBL:
Gene Tree for NPHP3-AS1 (if available)
TreeFam:
Gene Tree for NPHP3-AS1 (if available)

No data available for Orthologs for NPHP3-AS1 Gene

Paralogs for NPHP3-AS1 Gene

No data available for Paralogs for NPHP3-AS1 Gene

Variants for NPHP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPHP3-AS1 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs758558609 Pathogenic 132,722,083(+) CGCTC(-/G)TACTC nc-transcript-variant, upstream-variant-2KB, reference, frameshift-variant
rs886041990 Pathogenic 132,722,354(-) CGCCA(C/T)GGGGA nc-transcript-variant, reference, missense
rs145643112 Likely benign 132,722,202(+) TGCTG(C/T)CGCCC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs768083433 Likely benign 132,722,311(+) TCGAT(A/C)ACTTC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon
rs192633696 Uncertain significance 132,722,299(+) CCGTA(C/G)GTGTC nc-transcript-variant, upstream-variant-2KB, reference, synonymous-codon

Structural Variations from Database of Genomic Variants (DGV) for NPHP3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv938e214 CNV loss 21293372
esv25640 CNV loss 19812545
esv3304196 CNV mobile element insertion 20981092
esv3309169 CNV mobile element insertion 20981092
esv3360025 CNV insertion 20981092
esv3392181 CNV insertion 20981092
esv3597830 CNV gain 21293372
esv3893774 CNV loss 25118596
nsv1073681 CNV deletion 25765185
nsv1128874 CNV duplication 24896259
nsv1133563 CNV deletion 24896259
nsv1144051 CNV deletion 24896259
nsv1150162 CNV duplication 26484159
nsv460856 CNV gain 19166990
nsv473252 CNV novel sequence insertion 20440878
nsv517045 CNV loss 19592680
nsv591798 CNV loss 21841781
nsv591799 CNV gain 21841781
nsv591800 CNV gain 21841781
nsv998211 CNV loss 25217958

Relevant External Links for NPHP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPHP3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPHP3-AS1 Gene

Disorders for NPHP3-AS1 Gene

Relevant External Links for NPHP3-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NPHP3-AS1

No disorders were found for NPHP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPHP3-AS1 Gene

Publications for NPHP3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 60

Products for NPHP3-AS1 Gene

Sources for NPHP3-AS1 Gene

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