NPFF Gene
protein-coding GIFtS: 53
GCID: GC12M053896
|
|
neuropeptide FF-amide peptide precursor
| |
Aliases
for NPFF gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Neuropeptide FF-Amide Peptide Precursor1 2 | | FMRFAL1 2 | | FMRFamide-Related Peptides2 |
Export aliases for NPFF gene to outside databasesPrevious GC identifers: GC12M054012 GC12M053618 GC12M052186 GC12M050940 |
Summaries
for NPFF gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for NPFF:
FMFRamide-related protein precursor plays a role in the regulation of heart rate and blood pressure and the modulationof morphine-induced antinociception. FMRFAL encodes a preproprotein which is cleaved to form two active peptides withsimilar function. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: NPFF_HUMAN, O15130Function: Morphine modulating peptides. Have wide-ranging physiologic effects, including the modulation ofmorphine-induced analgesia, elevation of arterial blood pressure, and increased somatostatin secretion from thepancreas. Neuropeptide FF potentiates and sensitizes ASIC1 and ASIC3 channels
Gene Wiki entry for NPFF
|
Genomic Views
for NPFF gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000012.11 NC_018923.1 NT_029419.12
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the NPFF gene promoter:
p53 Sp1 AP-1 ATF-2 c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for NPFF
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPFF |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 12q13.13 Ensembl cytogenetic band: 12q13.13 HGNC cytogenetic band: 12q13.13NPFF Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M053896: view genomic region
(about GC identifiers)
Start:
|
53,900,472 bp from pter |
End:
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53,902,004 bp from pter |
Size:
|
1,533 bases |
Orientation:
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minus strand |
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Proteins
for NPFF gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NPFF_HUMAN, O15130 (See
protein sequence)Recommended Name: FMRFamide-related peptides precursor Size: 113 amino acids; 12440 Da
Subcellular location: SecretedExplore the universe of human proteins at neXtProt for NPFF: NX_O15130
NPFF Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_003708.1
ENSEMBL proteins: ENSP00000267017 Reactome Protein details: O15130
Human Recombinant Protein Products:
Gene Ontology (GO): 5/7 cellular component terms (GO ID links to tree view) (see all 7): About this table
NPFF for ontologies About GeneDecksing
NPFF Antibody Products:
Assay Products for NPFF: |
Protein
Domains /
Families
for NPFF gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NPFF for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry O15130ProtoNet protein and cluster: O15130 1 Blocks protein family: IPB008065 FMRFamide-related peptide precursor signature
UniProtKB/Swiss-Prot: NPFF_HUMAN, O15130Similarity: Belongs to the FARP (FMRFamide related peptide) family |
Function
for NPFF gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: NPFF_HUMAN, O15130Function: Morphine modulating peptides. Have wide-ranging physiologic effects, including the modulation ofmorphine-induced analgesia, elevation of arterial blood pressure, and increased somatostatin secretion from thepancreas. Neuropeptide FF potentiates and sensitizes ASIC1 and ASIC3 channels Genatlas biochemistry entry for NPFF:FMRF-amide related peptides,precursor
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view): About this table
NPFF for ontologies About GeneDecksing
|
Pathways & Interactions
for NPFF gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Class A/1 (Rhodopsin-like receptors) | | | 2 | Signaling by GPCR | | | 3 | G alpha (q) signalling events | | | 4 | Orexin and neuropeptides FF and QRFP bind to their respective receptors | | | 5 | Neuropeptides signaling through G-protein alpha-i & G-protein alpha-q | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 EMD Millipore Pathway for NPFF
5/9 
Reactome Pathways for NPFF (see all 9)
NPFF for pathways About GeneDecksing
Interactions:
SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NPFF
STRING Interaction
Network Preview (showing 5 interactants - click image to see 25)
5/124 Interacting proteins for NPFF (O151303 ENSP000002670174) via UniProtKB, MINT, STRING, and/or I2D (see all 124)About this table
Gene Ontology (GO): 5/16 biological process terms (GO ID links to tree view) (see all 16): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0002438 | acute inflammatory response to antigenic stimulus |
IEA | -- | | GO:0007204 | elevation of cytosolic calcium ion concentration |
IEA | -- | | GO:0007218 | neuropeptide signaling pathway |
IEA | -- | | GO:0007268 | synaptic transmission |
TAS | 9224703 | | GO:0010459 | negative regulation of heart rate |
IEA | -- |
NPFF for ontologies About GeneDecksing
|
Drugs & Compounds
for NPFF gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
NPFF for compounds About GeneDecksing
 Browse Tocris compounds for NPFF
10/14 Novoseek chemical compound relationships for NPFF gene (see all 14) About this table
| Compound |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| npff |
99 |
360 |
16572434 (10), 19922753 (9), 16515822 (9), 18823989 (7) (see all 62) |
| rfamide |
91.5 |
18 |
18823948 (2), 12606605 (1), 14960341 (1), 12012424 (1) (see all 9) |
| onpf |
91.1 |
4 |
16572434 (1), 12149260 (1) |
| (125)i-ylfqpqrfamide |
91.1 |
1 |
7716061 (1) |
| bibp3226 |
83.5 |
3 |
15127947 (1), 11325787 (1), 19958467 (1) |
| deltorphin i |
78.1 |
1 |
15608144 (1) |
| fmrfamide |
77.8 |
18 |
12668052 (3), 10798398 (2), 16516345 (1), 10851242 (1) (see all 7) |
| opiate |
56.9 |
9 |
7716061 (2), 11334572 (1), 8804117 (1), 16515822 (1) (see all 5) |
| naltrindole |
55.3 |
2 |
11179595 (1), 15804369 (1) |
| morphine |
47 |
11 |
9593588 (4), 9203557 (1), 17597204 (1), 17936900 (1) (see all 6) |
Search CenterWatch for drugs/clinical trials and news about NPFF
|
Transcripts
for NPFF gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for NPFF gene: NM_003717.2 Unigene Cluster for NPFF: Neuropeptide FF-amide peptide precursor Hs.733076 [show with all ESTs]Unigene Representative Sequence: BC0357582 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000448979 ENST00000267017(uc001sdw.1)
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: NPFF (NM_003717) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NPFF | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPFF |
Additional cDNA sequence: AF005271.1 BC035758.1 2 DOTS entries: DT.410741 DT.92416730 24/64 AceView cDNA sequences (see all 64): CK824018 BM875416 BM876120 AA336101 AA024691 BX281139 AA325498 BM565585 AA232243 AW958164 AA805513 BM313882 CK823994 BU073391 BM722845 BU947733 AI126980 AW137499 AA885059 NM_003717 AA460863 AA335098 BM925776 AF005271
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for NPFF About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 |
|---|
|
| SP1: | | | | | | | |
| SP2: | | | | | | |
ECgene alternative splicing isoforms for NPFF
|
Expression
for NPFF gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| NPFF expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CAAGGTCCAC
About this image
See NPFF Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NPFF
SOURCE GeneReport for Unigene cluster: Hs.733076
SABiosciences Expression via Pathway-Focused PCR Array including NPFF:
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NPFF
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NPFF | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NPFF | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NPFF |
Orthologs
for NPFF gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of human and mouse.
Orthologs for NPFF gene from 1/3 species (see all 3) About this table
ENSEMBL Gene Tree for NPFF (if available)
TreeFam Gene Tree for NPFF (if available) |
Paralogs
for NPFF gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for NPFF gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 12 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for NPFF (53900472 - 53902004 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for NPFF: -- | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NPFF |
|
Disorders
/ Diseases
for NPFF gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NPFF for disorders About GeneDecksing
OMIM gene information: 604643
OMIM disorders: --
8  diseases for NPFF: About MalaCardsneonatal abstinence syndrome opioid abuse chronic pain parkinson's disease
choroiditis hypertension neuroblastoma neuronitis
4 diseases from the University of Copenhagen DISEASES database for NPFF:Pain agnosia Opiate dependence Opioid abuse Withdrawal disorder Export disorders for NPFF gene to outside databases
|
Publications
for NPFF gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for NPFF gene, integrated from 9 sources (see all 85):
(articles sorted by number of sources associating them with NPFF) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A human gene encoding morphine modulating peptides related to NPFF and FMRFamide. (PubMed id 9224703)1, 2, 3, 9 Perry S.J.... Burke J.F. (1997)
- Selective modulation of heteromeric ASIC proton-gated channels by neuropeptide FF. (PubMed id 11587714)1, 2, 9 Catarsi S.... Seguela P. (2001)
- Pulsatile secretion of neuropeptide FF into human blood. (PubMed id 9786165)1, 9 Sundblom D.M....Fyhrquist F. (1998)
- Neuropeptide FF, a mammalian neuropeptide with multiple functions. (PubMed id 8804117)1, 9 Panula P....Wasowicz K. (1996)
- Regulation of endogenous human NPFF2 receptor by neuropeptide FF in SK-N-MC neuroblastoma cell line. (PubMed id 16336216)1, 9 Anko M.L. and Panula P. (2006)
- Receptor for the pain modulatory neuropeptides FF and AF is an orphan G protein-coupled receptor. (PubMed id 10851242)1, 9 Elshourbagy N.A....Sarau H.M. (2000)
- Neuropeptide FF-like immunoreactivity in human plasma. (PubMed id 7784266)1, 9 Sundblom D.M....Fyhrquist F. (1995)
- Physical association between neuropeptide FF and micro-opioid receptors as a possible molecular basis for anti-opioid activity. (PubMed id 17224450)1, 9 Roumy M....Mollereau C. (2007)
- Identification and characterization of two G protein-coupled receptors for neuropeptide FF. (PubMed id 11024015)1, 9 Bonini J.A....Borowsky B. (2000)
- Characterization of the NPGP receptor and identification of a novel short mRNA isoform in human hypothalamus. (PubMed id 12609745)1, 9 Laemmle B....Wieland H.A. (2003)
|
External Searches for NPFF gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing NPFF gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing NPFF gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NPFF gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for NPFF | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for NPFF gene:
Search GeneIP for patents involving NPFF
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for NPFF gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for NPFF | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NPFF | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NPFF | | | Browse OriGene Protein Over-expression Lysates | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for NPFF | | OriGene 3'-UTR Clone for NPFF | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NPFF | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | Browse OriGene full length recombinant human proteins expressed in human HEK293 cells | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling | | | OriGene Custom Antibody Services for NPFF | | OriGene Custom Protein Services for NPFF | | | OriGene Custom Immunoassay Development | | |
| |
 |
 |
| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NPFF | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NPFF | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPFF | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NPFF | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NPFF | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NPFF |
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 |  |  |  | |
| | | | Search Tocris compounds for NPFF |
| |  |  |  |  | | | | |
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 | | | NPFF Proteins, Antibodies, CLIAs, and ELISAs |
| | | |  |  |  | | | | ThermoFisher Antibodies for NPFF |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPFF |
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