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Aliases for NPFF Gene

Aliases for NPFF Gene

  • Neuropeptide FF-Amide Peptide Precursor 2 3
  • FMRFamide-Related Peptides 4
  • FMRFAL 3

External Ids for NPFF Gene

Previous GeneCards Identifiers for NPFF Gene

  • GC12M053896
  • GC12M054012
  • GC12M053618
  • GC12M052186
  • GC12M050940

Summaries for NPFF Gene

Entrez Gene Summary for NPFF Gene

  • FMFRamide-related protein precursor plays a role in the regulation of heart rate and blood pressure and the modulation of morphine-induced antinociception. FMRFAL encodes a preproprotein which is cleaved to form two active peptides with similar function. [provided by RefSeq, Jul 2008]

GeneCards Summary for NPFF Gene

NPFF (Neuropeptide FF-Amide Peptide Precursor) is a Protein Coding gene. Diseases associated with NPFF include pain agnosia and agnosia. Among its related pathways are Signaling by GPCR and Interleukin receptor SHC signaling. GO annotations related to this gene include receptor binding and neuropeptide hormone activity.

UniProtKB/Swiss-Prot for NPFF Gene

  • Morphine modulating peptides. Have wide-ranging physiologic effects, including the modulation of morphine-induced analgesia, elevation of arterial blood pressure, and increased somatostatin secretion from the pancreas. Neuropeptide FF potentiates and sensitizes ASIC1 and ASIC3 channels.

Gene Wiki entry for NPFF Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPFF Gene

Genomics for NPFF Gene

Regulatory Elements for NPFF Gene

Genomic Location for NPFF Gene

Chromosome:
12
Start:
53,506,690 bp from pter
End:
53,507,638 bp from pter
Size:
949 bases
Orientation:
Minus strand

Genomic View for NPFF Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NPFF Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPFF Gene

Proteins for NPFF Gene

  • Protein details for NPFF Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O15130-NPFF_HUMAN
    Recommended name:
    Pro-FMRFamide-related neuropeptide FF
    Protein Accession:
    O15130
    Secondary Accessions:
    • Q3SXL4

    Protein attributes for NPFF Gene

    Size:
    113 amino acids
    Molecular mass:
    12440 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for NPFF Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NPFF Gene

Proteomics data for NPFF Gene at MOPED

Post-translational modifications for NPFF Gene

No Post-translational modifications

Other Protein References for NPFF Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NPFF Gene

Domains & Families for NPFF Gene

Gene Families for NPFF Gene

Protein Domains for NPFF Gene

Suggested Antigen Peptide Sequences for NPFF Gene

Graphical View of Domain Structure for InterPro Entry

O15130

UniProtKB/Swiss-Prot:

NPFF_HUMAN :
  • Belongs to the FARP (FMRFamide related peptide) family.
Family:
  • Belongs to the FARP (FMRFamide related peptide) family.
genes like me logo Genes that share domains with NPFF: view

Function for NPFF Gene

Molecular function for NPFF Gene

GENATLAS Biochemistry:
FMRF-amide related peptides,precursor
UniProtKB/Swiss-Prot Function:
Morphine modulating peptides. Have wide-ranging physiologic effects, including the modulation of morphine-induced analgesia, elevation of arterial blood pressure, and increased somatostatin secretion from the pancreas. Neuropeptide FF potentiates and sensitizes ASIC1 and ASIC3 channels.

Gene Ontology (GO) - Molecular Function for NPFF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001664 G-protein coupled receptor binding IBA --
GO:0005102 receptor binding TAS 9224703
GO:0005184 neuropeptide hormone activity IBA --
genes like me logo Genes that share ontologies with NPFF: view

Phenotypes for NPFF Gene

GenomeRNAi human phenotypes for NPFF:
genes like me logo Genes that share phenotypes with NPFF: view

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NPFF

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPFF Gene

Localization for NPFF Gene

Subcellular locations from UniProtKB/Swiss-Prot for NPFF Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NPFF Gene COMPARTMENTS Subcellular localization image for NPFF gene
Compartment Confidence
extracellular 5
cytosol 2
nucleus 2

Gene Ontology (GO) - Cellular Components for NPFF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IBA --
GO:0005829 cytosol IEA --
GO:0030425 dendrite IBA --
GO:0031982 vesicle IEA --
genes like me logo Genes that share ontologies with NPFF: view

Pathways & Interactions for NPFF Gene

genes like me logo Genes that share pathways with NPFF: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

SIGNOR curated interactions for NPFF Gene

Activates:

Gene Ontology (GO) - Biological Process for NPFF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002438 acute inflammatory response to antigenic stimulus IEA --
GO:0003254 regulation of membrane depolarization IEA --
GO:0007204 positive regulation of cytosolic calcium ion concentration IEA --
GO:0007218 neuropeptide signaling pathway IEA --
GO:0007268 synaptic transmission TAS 9224703
genes like me logo Genes that share ontologies with NPFF: view

Drugs & Compounds for NPFF Gene

(5) Drugs for NPFF Gene - From: NovoSeek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Morphine Approved, Investigational Pharma Partial agonist, Agonist 805
cyclic amp Experimental Pharma 0
BIBP3226 Pharma Antagonist 0
naltrindole Pharma Antagonist 0
Calcium Nutra 0

(9) Additional Compounds for NPFF Gene - From: NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
(125)I-Ylfqpqrfamide
Deltorphin I
Fmrfamide
lead
  • Glover
  • Haro Mix MH-204
  • Lead (II) ion
  • Lead ion (Pb2+)
  • Lead(2+) ion
7439-92-1
NPFF
genes like me logo Genes that share compounds with NPFF: view

Transcripts for NPFF Gene

mRNA/cDNA for NPFF Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(64) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPFF Gene

Neuropeptide FF-amide peptide precursor:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NPFF

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPFF Gene

ExUns: 1 ^ 2 ^ 3
SP1:
SP2:

Relevant External Links for NPFF Gene

GeneLoc Exon Structure for
NPFF
ECgene alternative splicing isoforms for
NPFF

Expression for NPFF Gene

mRNA expression in normal human tissues for NPFF Gene

SOURCE GeneReport for Unigene cluster for NPFF Gene Hs.733076

genes like me logo Genes that share expression patterns with NPFF: view

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for NPFF Gene

Orthologs for NPFF Gene

This gene was present in the common ancestor of chordates.

Orthologs for NPFF Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NPFF 35
  • 83.19 (n)
  • 74.34 (a)
NPFF 36
  • 71 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Npff 35
  • 75 (n)
  • 64.81 (a)
Npff 16
Npff 36
  • 59 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NPFF 35
  • 99.41 (n)
  • 98.23 (a)
NPFF 36
  • 98 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Npff 35
  • 77.47 (n)
  • 67.59 (a)
lizard
(Anolis carolinensis)
Reptilia NPFF 36
  • 41 (a)
OneToOne
Species with no ortholog for NPFF:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPFF Gene

ENSEMBL:
Gene Tree for NPFF (if available)
TreeFam:
Gene Tree for NPFF (if available)

Paralogs for NPFF Gene

No data available for Paralogs for NPFF Gene

Variants for NPFF Gene

Sequence variations from dbSNP and Humsavar for NPFF Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs8192593 -- 53,507,321(-) TGAGA(C/T)TTGTG intron-variant
rs11558825 -- 53,507,099(+) ACCCA(A/G)AGGTC reference, missense
rs115807705 -- 53,507,310(+) AGAAC(A/C)TAGAG intron-variant
rs138678500 -- 53,507,136(+) GCTGT(C/G)TTCCT missense, reference
rs146357294 -- 53,507,052(+) GCTCC(A/G)GCCAG reference, missense

Variation tolerance for NPFF Gene

Residual Variation Intolerance Score: 78% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.26; 40.55% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NPFF Gene

HapMap Linkage Disequilibrium report
NPFF

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NPFF Gene

Disorders for NPFF Gene

MalaCards: The human disease database

(2) MalaCards diseases for NPFF Gene - From: DISEASES

Disorder Aliases PubMed IDs
pain agnosia
  • analgesia
agnosia
  • alexia
- elite association
Search NPFF in MalaCards View complete list of genes associated with diseases

Relevant External Links for NPFF

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NPFF
genes like me logo Genes that share disorders with NPFF: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NPFF Gene

Publications for NPFF Gene

  1. A human gene encoding morphine modulating peptides related to NPFF and FMRFamide. (PMID: 9224703) Perry S.J. … Burke J.F. (FEBS Lett. 1997) 2 23 67
  2. Multiple primary cilia modulate the fluid transcytosis in choroid plexus epithelium. (PMID: 19958467) Narita K. … Takeda S. (Traffic 2010) 23 67
  3. Pressor and tachycardic responses to intrathecal administration of neuropeptide FF in anesthetized rats. (PMID: 19922753) Fang Q. … Wang R. (Peptides 2010) 23 67
  4. Solubilization and functional reconstitution of human neuropeptide FF2 receptors. (PMID: 20018158) Talmont F. … Zajac J.M. (Anal. Biochem. 2010) 23 67
  5. Modulation by neuropeptide FF of the interaction of mu-opioid (MOP) receptor with G-proteins. (PMID: 20211672) KersantAc F. … Mollereau C. (Neurochem. Int. 2010) 23 67

Products for NPFF Gene

  • Pathway & Disease-focused RT² Profiler PCR Arrays
  • QIAGEN qRT-PCR Assays for microRNAs that regulate NPFF
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NPFF
    • Block miRNA regulation of NPFF using miScript Target Protectors

    Sources for NPFF Gene

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