NPEPPS Gene
protein-coding GIFtS: 63
GCID: GC17P045608
|
|
aminopeptidase puromycin sensitive
| |
Aliases
for NPEPPS gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| Aminopeptidase Puromycin Sensitive1 2 | | Puromycin-Sensitive Aminopeptidase2 | | PSA1 2 3 5 | | EC 3.4.11.143 | | MP1001 2 5 | | EC 3.4.118 | | Cytosol Alanyl Aminopeptidase2 3 | | EC 3.4.11.28 | | AAP-S2 3 | | EC 3.4.11.38 | | Metalloproteinase MP1002 | | |
Export aliases for NPEPPS gene to outside databasesPrevious GC identifers: GC17P035973 GC17P048089 GC17P045950 GC17P046083 GC17P042963 GC17P041029 |
Summaries
for NPEPPS gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for NPEPPS:
This gene encodes the puromycin-sensitive aminopeptidase, a zinc metallopeptidase which hydrolyzes amino acids from theN-terminus of its substrate. The protein has been localized to both the cytoplasm and to cellular membranes. Thisenzyme degrades enkaphalins in the brain, and studies in mouse suggest that it is involved in proteolytic eventsregulating the cell cycle. (provided by RefSeq, Jul 2008)
UniProtKB/Swiss-Prot: PSA_HUMAN, P55786Function: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic eventsessential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in theantigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitopeprecursors. Digests the poly-Q peptides found in many cellular proteins. Digests tau from normal brain moreefficiently than tau from Alzheimer disease brain
Gene Wiki entry for NPEPPS
|
Genomic Views
for NPEPPS gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000017.10 NC_018928.1 NT_010783.15
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the NPEPPS gene promoter:
Sp1 Pax-5 Meis-1b FOXL1 Egr-4 GATA-1 MEF-2A Msx-1 aMEF-2 Hlf
Other transcription factors
Search SABiosciences Chromatin IP Primers for NPEPPS
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NPEPPS |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 17q21 Ensembl cytogenetic band: 17q21.32 HGNC cytogenetic band: 17q12-q21NPEPPS Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P045608: view genomic region
(about GC identifiers)
Start:
|
45,600,306 bp from pter |
End:
|
45,700,642 bp from pter |
Size:
|
100,337 bases |
Orientation:
|
plus strand |
1 alternative location:
| Chr17-,PATCHES 36,373,802-36,413,381 |
|
Proteins
for NPEPPS gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: PSA_HUMAN, P55786 (See
protein sequence)Recommended Name: Puromycin-sensitive aminopeptidase Size: 919 amino acids; 103276 Da
Cofactor: Binds 1 zinc ion per subunit (By similarity)
Subunit: Monomer
Subcellular location: Cytoplasm, cytosol. Nucleus (Potential)
Caution: It is uncertain whether Met-1 or Met-45 is the initiator. N-terminal sequencing in PubMed:10978616 suggeststhat Met-45 is used, followed by methionine initiator removal
Sequence caution: Sequence=AAH65294.2; Type=Erroneous initiation; Note=Translation N-terminally extended;Sequence=CAA68964.1; Type=Erroneous initiation; Note=Translation N-terminally extended;
Secondary accessions: Q6P145 Q9NP16 Q9UEM2Explore the universe of human proteins at neXtProt for NPEPPS: NX_P55786
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_P55786
4/6 DME Specific Peptides for NPEPPS (P55786) (see all 6)
NPEPPS Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_006301.3
ENSEMBL proteins: ENSP00000437019 ENSP00000433287 ENSP00000433735 ENSP00000434554 ENSP00000320324 ENSP00000434585 ENSP00000433649 ENSP00000435639 ENSP00000436733 ENSP00000435966 ENSP00000432127 ENSP00000433549 ENSP00000442461 Reactome Protein details: P55786
Human Recombinant Protein Products for NPEPPS:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
NPEPPS for ontologies About GeneDecksing
NPEPPS Antibody Products:
Assay Products for NPEPPS: |
Protein
Domains /
Families
for NPEPPS gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NPEPPS for domains About GeneDecksing
4 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry P55786ProtoNet protein and cluster: P55786 1 Blocks protein family: IPB001930 Membrane alanyl dipeptidase (M1) family signature
UniProtKB/Swiss-Prot: PSA_HUMAN, P55786Similarity: Belongs to the peptidase M1 family |
Function
for NPEPPS gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: PSA_HUMAN, P55786Function: Aminopeptidase with broad substrate specificity for several peptides. Involved in proteolytic eventsessential for cell growth and viability. May act as regulator of neuropeptide activity. Plays a role in theantigen-processing pathway for MHC class I molecules. Involved in the N-terminal trimming of cytotoxic T-cell epitopeprecursors. Digests the poly-Q peptides found in many cellular proteins. Digests tau from normal brain moreefficiently than tau from Alzheimer disease brainCatalytic activity: Release of an N-terminal amino acid, preferentially alanine, from a wide range of peptides, amidesand arylamidesEnzyme regulation: Strongly inhibited by bestatin, leuhistin, actinonin, amastatin, 1,10-phenanthroline, DFP, PCMBS,Zn(2+), Cd(2+), Co(2+), Cu(2+), Hg(2+), EDTA and puromycin. Not inhibited by PMSF, and only slightly inhibited byleupeptin and aprotinin. Activity is increased by Mg(2+) and Ca(2+)Biophysicochemical properties: Kinetic parameters: KM=2.20 mM for Lys-p-NA; KM=0.25 mM for Leu-p-NA; KM=0.27 mM forAla-p-NA; KM=0.80 mM for Met-p-NA; KM=0.47 mM for Pro-p-NA; KM=0.21 mM for Val-p-NA; KM=182 uM for Ala-MCA; KM=189 uMfor Met-MCA; KM=220 uM for Lys-MCA; KM=91 uM for Leu-MCA; KM=167 uM for Phe-MCA; pH dependence: Optimum pH is 7.5.Stable from pH 5.0 to 8.0; Temperature dependence: Stable up to 40 degrees Celsius; Genatlas biochemistry entry for NPEPPS:aminopeptidase puromycin sensitive,expressed in the brain (most abundant aminopeptidase),localized in cortical andcerebellar neurons,putatively contributing to the degradation of enkephalins
Enzyme Numbers (IUBMB): EC 3.4.11.32 EC 3.4.11.141 EC 3.4.11.22 EC 3.4.112
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view): About this table
NPEPPS for ontologies About GeneDecksing
Phenotypes:
1 GenomeRNAi human phenotype for NPEPPS:
8 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Npepps):
NPEPPS for phenotypes About GeneDecksing
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NPEPPS (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NPEPPS (see all 3)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: NPEPPS (NM_006310) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NPEPPS | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPEPPS |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPEPPS |
|
Pathways & Interactions
for NPEPPS gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Immune System | | | 2 | Antigen processing: Ubiquitination & Proteasome degradation | | | 3 | Trimming of N-ter extended precursor fragments by cytosolic aminopeptidases | | | 4 | Selected targets of GCR-alpha | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 EMD Millipore Pathway for NPEPPS
5 
Reactome Pathways for NPEPPS
NPEPPS for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NPEPPS
STRING Interaction
Network Preview (showing 5 interactants - click image to see 13)
5/112 Interacting proteins for NPEPPS (P557861, 3 ENSP000003203244) via UniProtKB, MINT, STRING, and/or I2D (see all 112)About this table
Gene Ontology (GO): 4 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0000209 | protein polyubiquitination |
TAS | -- | | GO:0002474 | antigen processing and presentation of peptide antigen via MHC class I |
TAS | -- | | GO:0006508 | proteolysis |
IEA | -- | | GO:0071456 | cellular response to hypoxia |
IDA | -- |
NPEPPS for ontologies About GeneDecksing
|
Drugs & Compounds
for NPEPPS gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
NPEPPS for compounds About GeneDecksing
 Browse Tocris compounds for NPEPPS
6 Novoseek chemical compound relationships for NPEPPS gene About this table
Search CenterWatch for drugs/clinical trials and news about NPEPPS / PSA
|
Transcripts
for NPEPPS gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for NPEPPS gene: NM_006310.3 Unigene Cluster for NPEPPS: Aminopeptidase puromycin sensitive Hs.740414 [show with all ESTs]Unigene Representative Sequence: NM_00631018/26 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 26): ENST00000527200 ENST00000525007 ENST00000525037(uc010dba.1) ENST00000528751
ENST00000530173 ENST00000526247 ENST00000532729 ENST00000322157(uc010wkt.2 uc002ilr.4 uc010wku.2 uc010wkv.2)
ENST00000533573 ENST00000527298 ENST00000534691 ENST00000527824 ENST00000534727
ENST00000534814 ENST00000525401 ENST00000527964 ENST00000530514 ENST00000527360
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NPEPPS (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NPEPPS (see first 1)
NM_006310 (human cat#: SC126538) NM_006310 (human cat#: SC318391) NM_006310 (human cat#: SC128264)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: NPEPPS (NM_006310) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NPEPPS | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NPEPPS |
Additional cDNA sequence: AJ132583.1 AK095877.1 AK096491.1 AK096709.1 AK293450.1 AK293995.1 AK296887.1 AK297107.1 AK303037.1 BC065294.1 BC067792.1 NR_036750.1 XR_172201.1 24/37 DOTS entries (see all 37): DT.85104799 DT.100810296 DT.91934981 DT.100824478 DT.70101756 DT.91811703 DT.102843581 DT.100727004 DT.40117560 DT.120896689 DT.91883443 DT.100640887 DT.120896634 DT.86835850 DT.120896722 DT.419664 DT.91982917 DT.97864464 DT.99987084 DT.100809252 DT.100824473 DT.120896643 DT.120896678 DT.120896720 24/558 AceView cDNA sequences (see all 558): BG764490 H88733 BQ948869 BE513530 AI417739 AA811175 BQ918409 AA716290 AA962342 H92317 BQ937998 W61096 N25833 AU124313 F04707 BE255877 AW249850 AJ132583 AW572592 AI371747 AI907616 BP357023 BU617836 AW262710
GeneLoc Exon Structure
4 Alternative Splicing Database (ASD) splice patterns (SP) for NPEPPS About this scheme
| ExUns: | 1 | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13a | · | 13b | ^ | 14 | ^ | 15a | · | 15b | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20a | · | 20b | ^ | 21a | · | 21b | ^ | 22 | ^ |
|---|
|
| SP1: | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | - | | | | | | | | | | | | | | | | - | | - | | |
| SP2: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | |
| SP4: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| ExUns: | 23 | ^ | 24a | · | 24b |
|---|
|
| SP1: | | | | | | | |
| SP2: | | | | | | | |
| SP3: | | | | | | | |
| SP4: | | | | | | |
ECgene alternative splicing isoforms for NPEPPS
|
Expression
for NPEPPS gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| NPEPPS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GTAGGAAAGC
About this image
See NPEPPS Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NPEPPS
SOURCE GeneReport for Unigene cluster: Hs.740414
UniProtKB/Swiss-Prot: PSA_HUMAN, P55786Tissue specificity: Detected in liver, epithelium of renal tubules, epithelium of small and large intestine, gastricepithelial cells, and alveoli of the lung (at protein level)
SABiosciences Custom PCR Arrays for NPEPPS
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NPEPPS
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NPEPPS | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NPEPPS | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NPEPPS | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NPEPPS |
Orthologs
for NPEPPS gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for NPEPPS gene from 9/35 species (see all 35) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
NPEPPS1 |
aminopeptidase puromycin sensitive |
84.31(n)
91.84(a) |
|
426231 XM_001234985.2 XP_001234986.2 |
lizard
(Anolis carolinensis) |
Reptilia |
-- |
-- |
91(a) |
1 → many |
6(74116455-74177355) |
African clawed frog
(Xenopus laevis) |
Amphibia |
CA987419.12 |
-- |
77.26(n) |
|
CA987419.1 |
zebrafish
(Danio rerio) |
Actinopterygii |
BC055665.12 |
-- |
76.64(n) |
|
BC055665.1 |
fruit fly
(Drosophila melanogaster) |
Insecta |
Psa1 , 3 |
cytosol alanyl aminopeptidase3
Puromycin sensitive aminopeptidase1 |
56(a)
(best of 3)3
56.59(n)1
56.98(a)1 |
|
381751 NM_167887.21 NP_728618.11 |
worm
(Caenorhabditis elegans) |
Secernentea |
F49E8.33
pam-11 |
Protein PAM-11 |
39(a)
(best of 5)3
49.84(n)1
39.84(a)1 |
|
IV(7544328-7547304)3
1775281 NM_001028039.11 NP_001023210.11 |
baker's yeast
(Saccharomyces cerevisiae) |
Saccharomycetes |
AAP1(YHR047C)4
APE21 |
Arginine/alanine aminopeptidase, overproduction stimulates more4
Ape2p1 |
47.14(n)1
36.75(a)1 |
|
8(201310-198740)4
8536991 NP_012765.31 8564434
NP_011913.14 |
thale cress
(Arabidopsis thaliana) |
eudicotyledons |
APM11 |
aminopeptidase M1 |
53.2(n)
47.4(a) |
|
829446 NM_119463.4 NP_195035.2 |
rice
(Oryza sativa) |
Liliopsida |
AK120068.12 |
-- |
75.43(n) |
|
AK120068.1 |
ENSEMBL Gene Tree for NPEPPS (if available)
TreeFam Gene Tree for NPEPPS (if available) |
Paralogs
for NPEPPS gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for NPEPPS gene
- LNPEP2 ENPEP2 ANPEP2 TRHDE2 ERAP12 AQPEP2 ENSG000001740932 ERAP22
8 SIMAP similar genes for NPEPPS using alignment to 13 protein entries: PSA_HUMAN (see all proteins):NPEPPSL1 TBC1D3 ANPEP TRHDE ENPEP LNPEP
ERAP2 ERAP1
NPEPPS for paralogs About GeneDecksing
2 Pseudogenes.org Pseudogenes for NPEPPS
PGOHUM00000258041 PGOHUM00000258042
|
Genomic Variants
for NPEPPS gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 17 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for NPEPPS (45600306 - 45700642 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 19 variations for NPEPPS
15/19 CNVs (see all 19): 77649 72970 77650 32186 77648 88514 2229 7163 77646 88512 4039 72969 0804 88513 0328 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NPEPPS |
|
Disorders
/ Diseases
for NPEPPS gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database, Novoseek,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NPEPPS for disorders About GeneDecksing
OMIM gene information: 606793
OMIM disorders: --
16  diseases for NPEPPS: About MalaCardshigh pressure neurological syndrome clear cell renal cell carcinoma tauopathy renal cell carcinoma
squamous cell carcinoma alzheimer's disease prostate cancer neurodegeneration
dementia prostatitis carcinoma pneumonia
hypoxia tuberculosis neuronitis mycobacterium tuberculosis
2 diseases from the University of Copenhagen DISEASES database for NPEPPS:Schizophrenia Bipolar disorder 4 Novoseek disease relationships for NPEPPS gene About this table
| Disease |
-log (P-Val) |
Hits |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tauopathies |
64.1 |
2 |
16950154 (2) |
| alzheimers disease |
6.57 |
1 |
17476590 (1) |
| tumors |
0 |
4 |
16985214 (1), 12431818 (1) |
| prostate cancer |
0 |
2 |
12431818 (2) |
Human Genome Epidemiology (HuGE) Navigator: NPEPPS (1 document)
Export disorders for NPEPPS gene to outside databases
|
Publications
for NPEPPS gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
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PubMed articles for NPEPPS gene, integrated from 9 sources (see all 72):
(articles sorted by number of sources associating them with NPEPPS) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Cloning of the human puromycin-sensitive aminopeptidase and evidence for expression in neurons. (PubMed id 9048733)1, 2, 3, 9 Tobler A.R.... Fontana A. (1997)
- Cloning and analysis of the gene for the human puromycin-sensitive aminopeptidase. (PubMed id 10329370)1, 2, 3, 9 Thompson M.W.... Hersh L.B. (1999)
- Human puromycin-sensitive aminopeptidase: cloning of 3' UTR, evidence for a polymorphism at a.a. 140 and refined chromosomal localization to 17q21. (PubMed id 11435692)1, 2, 9 Bauer W.O.... Jakob F. (2001)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Degradation of tau protein by puromycin-sensitive aminopeptidase in vitro. (PubMed id 17154549)2, 9 Sengupta S....Binder L.I. (2006)
- cDNA cloning and molecular characterization of human brain metalloprotease MP100: a beta-secretase candidate? (PubMed id 10037494)1, 9 Huber G....Malherbe P. (1999)
- Involvement of puromycin-sensitive aminopeptidase in proteolysis of tau protein in cultured cells, and attenuated proteolysis of fro ntotemporal dementia and parkinsonism linked to chromosome 17 (FTDP-17) mutant tau. (PubMed id 20377816)1, 9 Yanagi K....Takeda M. (2009)
- Puromycin-sensitive aminopeptidase is the major peptidase responsible for digesting polyglutamine sequences released by proteasomes during protein degradation. (PubMed id 17318184)2, 9 Bhutani N....Goldberg A.L. (2007)
- Cobalt chloride-induced downregulation of puromycin-s ensitive aminopeptidase suppresses the migration and invasion of PC-3 cells. (PubMed id 19494703)1, 9 Lee S.H. and Kim H.G. (2009)
- Cytosolic aminopeptidases influence MHC class I-media ted antigen presentation in an allele-dependent manner. (PubMed id 19917696)2, 9 Kim E....Ahn K. (2009)
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External Searches for NPEPPS gene
(in PubMed,
OMIM, and NCBI Bookshelf)
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Genome Databases showing NPEPPS gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
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Other Databases showing NPEPPS gene
(According to HUGE)
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Specialized Databases showing NPEPPS gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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| Name | Description |
| PharmGKB entry for NPEPPS | Pharmacogenomics, SNPs, Pathways |
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| Patent Information for NPEPPS gene:
Search GeneIP for patents involving NPEPPS
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Products
for NPEPPS gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
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